PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000359156	[[7623408, 7623993], [7632455, 7632592], [7633756, 7633852], [7635238, 7635358], [7635561, 7635600], [7635962, 7636271], [7637691, 7638012], [7639094, 7639409], [7639489, 7639582], [7639954, 7640269], [7640368, 7640683], [7647676, 7647997], [7649408, 7649729], [7651463, 7651784], [7653734, 7654058], [7655073, 7655160], [7656240, 7656489]]	[[7632464, 7632592], [7633756, 7633852], [7635238, 7635358], [7635561, 7635600], [7635962, 7636271], [7637691, 7638012], [7639094, 7639409], [7639489, 7639582], [7639954, 7640269], [7640368, 7640683], [7647676, 7647997], [7649408, 7649729], [7651463, 7651784], [7653734, 7654058], [7655073, 7655160], [7656240, 7656286]]
ENST00000537044	[[7623411, 7623993], [7632455, 7633852], [7635238, 7635358], [7635561, 7635600], [7635962, 7636271], [7637691, 7638012], [7639094, 7639409], [7639489, 7639582], [7639954, 7640269], [7640368, 7640683], [7647676, 7647997], [7649408, 7649729], [7651463, 7651784], [7653734, 7654058], [7655073, 7655160], [7656240, 7656372]]	None
ENST00000542705	[[7623569, 7623993], [7625703, 7625775]]	None
ENST00000534848	[[7623766, 7623993], [7624441, 7624532]]	None
ENST00000542280	[[7623771, 7623993], [7632455, 7632592], [7635561, 7635600], [7635962, 7636170]]	[[7632464, 7632592], [7635561, 7635600], [7635962, 7636170]]
ENST00000537626	[[7623775, 7623993], [7632455, 7632592], [7635238, 7635358], [7635561, 7635600], [7635962, 7636088]]	[[7632464, 7632592], [7635238, 7635358], [7635561, 7635600], [7635962, 7636088]]
ENST00000541972	[[7623775, 7623993], [7632455, 7632509], [7633756, 7633852], [7635238, 7635358], [7635561, 7635600], [7635962, 7636271], [7637691, 7638012], [7639094, 7639409], [7639489, 7639582], [7639954, 7640269], [7640368, 7640683], [7647676, 7647997], [7649408, 7649729], [7651463, 7651784], [7653734, 7654058], [7655073, 7655160], [7655312, 7655333]]	[[7632486, 7632509], [7633756, 7633852], [7635238, 7635358], [7635561, 7635600], [7635962, 7636271], [7637691, 7638012], [7639094, 7639409], [7639489, 7639582], [7639954, 7640269], [7640368, 7640683], [7647676, 7647997], [7649408, 7649729], [7651463, 7651784], [7653734, 7654058], [7655073, 7655160], [7655312, 7655322]]
ENST00000396620	[[7623775, 7623993], [7632455, 7632509], [7633756, 7633852], [7635238, 7635358], [7635561, 7635600], [7635962, 7636271], [7637691, 7638012], [7639094, 7639409], [7639489, 7639582], [7639954, 7640683], [7647676, 7647997], [7649408, 7649729], [7651463, 7651784], [7653734, 7654058], [7655073, 7655160], [7656240, 7656372]]	[[7632486, 7632509], [7633756, 7633852], [7635238, 7635358], [7635561, 7635600], [7635962, 7636271], [7637691, 7638012], [7639094, 7639409], [7639489, 7639582], [7639954, 7640683], [7647676, 7647997], [7649408, 7649729], [7651463, 7651784], [7653734, 7654058], [7655073, 7655160], [7656240, 7656286]]
ENST00000432237	[[7623775, 7623993], [7632455, 7632509], [7633756, 7633852], [7635238, 7635358], [7635561, 7635600], [7635962, 7636271], [7637691, 7638012], [7639094, 7639409], [7639489, 7639582], [7639954, 7640269], [7640368, 7640683], [7647676, 7647997], [7649408, 7649729], [7651463, 7651784], [7653734, 7654058], [7655073, 7655160], [7656240, 7656372]]	[[7632486, 7632509], [7633756, 7633852], [7635238, 7635358], [7635561, 7635600], [7635962, 7636271], [7637691, 7638012], [7639094, 7639409], [7639489, 7639582], [7639954, 7640269], [7640368, 7640683], [7647676, 7647997], [7649408, 7649729], [7651463, 7651784], [7653734, 7654058], [7655073, 7655160], [7656240, 7656286]]
ENST00000538840	[[7635889, 7636271], [7637691, 7638014]]	None
ENST00000539632	[[7635995, 7636294], [7637691, 7637940]]	None
NM_004244	[[7623411, 7623993], [7632455, 7632592], [7633756, 7633852], [7635238, 7635358], [7635561, 7635600], [7635962, 7636271], [7637691, 7638012], [7639094, 7639409], [7639489, 7639582], [7639954, 7640269], [7640368, 7640683], [7647676, 7647997], [7649408, 7649729], [7651463, 7651784], [7653734, 7654058], [7655073, 7655160], [7656240, 7656414]]	[[7632464, 7632592], [7633756, 7633852], [7635238, 7635358], [7635561, 7635600], [7635962, 7636271], [7637691, 7638012], [7639094, 7639409], [7639489, 7639582], [7639954, 7640269], [7640368, 7640683], [7647676, 7647997], [7649408, 7649729], [7651463, 7651784], [7653734, 7654058], [7655073, 7655160], [7656240, 7656286]]
NM_203416	[[7623411, 7623993], [7632455, 7632509], [7633756, 7633852], [7635238, 7635358], [7635561, 7635600], [7635962, 7636271], [7637691, 7638012], [7639094, 7639409], [7639489, 7639582], [7639954, 7640269], [7640368, 7640683], [7647676, 7647997], [7649408, 7649729], [7651463, 7651784], [7653734, 7654058], [7655073, 7655160], [7656240, 7656414]]	[[7632486, 7632509], [7633756, 7633852], [7635238, 7635358], [7635561, 7635600], [7635962, 7636271], [7637691, 7638012], [7639094, 7639409], [7639489, 7639582], [7639954, 7640269], [7640368, 7640683], [7647676, 7647997], [7649408, 7649729], [7651463, 7651784], [7653734, 7654058], [7655073, 7655160], [7656240, 7656286]]

Promoter

Chrom	Start	End	Description
chr12	7655329	7655334	CAGE_peak_3_at_CD163_5end
chr12	7656345	7656356	CAGE_peak_2_at_CD163_5end
chr12	7656357	7656379	CAGE_peak_1_at_CD163_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr12	GH12I007496	7496762	7498308	0.2	[{'connected_gene': 'CD163', 'score': 0.44}, {'connected_gene': 'CD163L1', 'score': 0.37}]
chr12	GH12I007500	7500396	7504352	0.96	[{'connected_gene': 'CD163', 'score': 550.77}, {'connected_gene': 'ATN1', 'score': 4.51}, {'connected_gene': 'CD163L1', 'score': 0.34}]
chr12	GH12I007512	7512600	7512942	1.16	[{'connected_gene': 'PEX5', 'score': 3.17}, {'connected_gene': 'SLC2A3', 'score': 3.07}, {'connected_gene': 'CD163', 'score': 1.7}, {'connected_gene': 'GC12M007519', 'score': 0.26}]
chr12	GH12I007540	7540890	7543260	0.58	[{'connected_gene': 'DPPA3', 'score': 9.86}, {'connected_gene': 'GC12M007519', 'score': 0.39}, {'connected_gene': 'CD163', 'score': 0.28}]
chr12	GH12I007498	7498401	7500200	0.69	[{'connected_gene': 'ATN1', 'score': 4.58}, {'connected_gene': 'CD163', 'score': 0.77}, {'connected_gene': 'CD163L1', 'score': 0.37}]
chr12	GH12I007555	7555531	7557177	0.97	[{'connected_gene': 'GC12M007519', 'score': 550.77}, {'connected_gene': 'CD163L1', 'score': 6.62}, {'connected_gene': 'CD163', 'score': 4.02}, {'connected_gene': 'PEX5', 'score': 1.26}, {'connected_gene': 'SLC2A3', 'score': 1.2}]