PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000584284	[[80272743, 80274285], [80274542, 80274857], [80275289, 80275453]]	[[80274016, 80274285], [80274542, 80274857], [80275289, 80275371]]
ENST00000312648	[[80272745, 80273307], [80274070, 80274285], [80274542, 80274857], [80275289, 80275478]]	[[80273196, 80273307], [80274070, 80274285], [80274542, 80274857], [80275289, 80275371]]
ENST00000583376	[[80272749, 80273307], [80274070, 80274285], [80274542, 80275428]]	[[80273196, 80273307], [80274070, 80274285], [80274542, 80274639]]
ENST00000578509	[[80273850, 80274285], [80274542, 80274887], [80275289, 80275434]]	[[80274016, 80274285], [80274542, 80274639]]
ENST00000581744	[[80274007, 80274857], [80275289, 80275429]]	None
ENST00000581434	[[80274095, 80274285], [80274542, 80274787], [80275289, 80275426]]	[[80274761, 80274787], [80275289, 80275371]]
ENST00000582480	[[80274260, 80274285], [80274542, 80274915], [80275289, 80275455]]	[[80274260, 80274285], [80274542, 80274915], [80275289, 80275371]]
NM_006137	[[80272745, 80273307], [80274070, 80274285], [80274542, 80274857], [80275289, 80275480]]	[[80273196, 80273307], [80274070, 80274285], [80274542, 80274857], [80275289, 80275371]]

Promoter

Chrom	Start	End	Description
chr17	80275399	80275416	CAGE_peak_3_at_CD7_5end
chr17	80275417	80275463	CAGE_peak_1_at_CD7_5end
chr17	80275466	80275501	CAGE_peak_2_at_CD7_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr17	GH17I082313	82313689	82318415	1.72	[{'connected_gene': 'CD7', 'score': 550.77}, {'connected_gene': 'TEX19', 'score': 14.79}, {'connected_gene': 'CSNK1D', 'score': 5.37}, {'connected_gene': 'UTS2R', 'score': 5.14}, {'connected_gene': 'ENSG00000260563', 'score': 0.34}]
chr17	GH17I082256	82256648	82258057	1.13	[{'connected_gene': 'SLC16A3', 'score': 11.11}, {'connected_gene': 'DCXR', 'score': 7.5}, {'connected_gene': 'CSNK1D', 'score': 6.03}, {'connected_gene': 'C17orf62', 'score': 3.02}, {'connected_gene': 'CCDC57', 'score': 1.94}, {'connected_gene': 'NARF', 'score': 1.76}, {'connected_gene': 'CD7', 'score': 1.44}, {'connected_gene': 'WDR45B', 'score': 1.36}, {'connected_gene': 'SIRT7', 'score': 1.3}, {'connected_gene': 'PIR35303', 'score': 0.77}]
chr17	GH17I081424	81424701	81424850	1.07	[{'connected_gene': 'OGFOD3', 'score': 66.37}, {'connected_gene': 'FAAP100', 'score': 57.09}, {'connected_gene': 'CEP131', 'score': 48.29}, {'connected_gene': 'ENSG00000262877', 'score': 42.76}, {'connected_gene': 'TEPSIN', 'score': 38.47}, {'connected_gene': 'ENSG00000265678', 'score': 32.3}, {'connected_gene': 'HEXDC', 'score': 30.92}, {'connected_gene': 'HGS', 'score': 29.7}, {'connected_gene': 'ENSG00000260563', 'score': 25.93}, {'connected_gene': 'ENSG00000260369', 'score': 25.35}, {'connected_gene': 'ENSG00000260011', 'score': 24.15}, {'connected_gene': 'ARL16', 'score': 22.63}, {'connected_gene': 'CCDC57', 'score': 20.92}, {'connected_gene': 'TSPAN10', 'score': 20.16}, {'connected_gene': 'CSNK1D', 'score': 20.15}, {'connected_gene': 'GPS1', 'score': 19.9}, {'connected_gene': 'OXLD1', 'score': 14.47}, {'connected_gene': 'ALYREF', 'score': 12.74}, {'connected_gene': 'CCDC137', 'score': 11.63}, {'connected_gene': 'DUS1L', 'score': 10.89}, {'connected_gene': 'CD7', 'score': 10.71}, {'connected_gene': 'SLC38A10', 'score': 10.7}, {'connected_gene': 'LOC105371925', 'score': 10.66}, {'connected_gene': 'LOC100130370', 'score': 10.66}, {'connected_gene': 'ENSG00000264548', 'score': 10.27}, {'connected_gene': 'MCRIP1', 'score': 10.01}, {'connected_gene': 'ENSG00000229848', 'score': 9.89}, {'connected_gene': 'RFNG', 'score': 9.71}, {'connected_gene': 'GC17M081444', 'score': 0.34}, {'connected_gene': 'MIR4740', 'score': 0.34}, {'connected_gene': 'BAHCC1', 'score': 0.31}]
chr17	GH17I082337	82337635	82339904	1.38	[{'connected_gene': 'TEX19', 'score': 15.02}, {'connected_gene': 'CD7', 'score': 13.1}, {'connected_gene': 'ENSG00000260011', 'score': 7.23}, {'connected_gene': 'SECTM1', 'score': 0.77}]
chr17	GH17I082309	82309698	82310850	0.99	[{'connected_gene': 'TEX19', 'score': 11.91}, {'connected_gene': 'CD7', 'score': 0.44}, {'connected_gene': 'ENSG00000260563', 'score': 0.37}]
chr17	GH17I082518	82518610	82523302	2.28	[{'connected_gene': 'FOXK2', 'score': 567.38}, {'connected_gene': 'LOC105371942', 'score': 17.87}, {'connected_gene': 'ALYREF', 'score': 13.41}, {'connected_gene': 'CD7', 'score': 10.76}, {'connected_gene': 'HGS', 'score': 10.43}, {'connected_gene': 'C17orf62', 'score': 10.15}, {'connected_gene': 'HEXDC', 'score': 4.9}, {'connected_gene': 'ENSG00000262652', 'score': 4.24}, {'connected_gene': 'GC17M082549', 'score': 0.31}]
chr17	GH17I082200	82200001	82201828	1.35	[{'connected_gene': 'CCDC57', 'score': 44.37}, {'connected_gene': 'HGS', 'score': 13.73}, {'connected_gene': 'NARF-IT1', 'score': 13.26}, {'connected_gene': 'ACTG1', 'score': 12.87}, {'connected_gene': 'TEPSIN', 'score': 11.88}, {'connected_gene': 'ARHGDIA', 'score': 11.07}, {'connected_gene': 'CSNK1D', 'score': 10.8}, {'connected_gene': 'ENSG00000260563', 'score': 10.79}, {'connected_gene': 'ALYREF', 'score': 10.6}, {'connected_gene': 'CD7', 'score': 9.55}, {'connected_gene': 'HEXDC', 'score': 6.28}, {'connected_gene': 'NARF', 'score': 4.25}, {'connected_gene': 'DUS1L', 'score': 1.46}, {'connected_gene': 'GC17M082163', 'score': 0.28}]
chr17	GH17I082291	82291296	82305970	2.38	[{'connected_gene': 'CSNK1D', 'score': 59.13}, {'connected_gene': 'HGS', 'score': 39.46}, {'connected_gene': 'ENSG00000260563', 'score': 38.5}, {'connected_gene': 'NARF-IT1', 'score': 35.54}, {'connected_gene': 'ALYREF', 'score': 32.23}, {'connected_gene': 'FAAP100', 'score': 26.97}, {'connected_gene': 'TEX19', 'score': 25.52}, {'connected_gene': 'ENSG00000262652', 'score': 25.14}, {'connected_gene': 'ARL2BPP9', 'score': 23.79}, {'connected_gene': 'DUS1L', 'score': 23.67}, {'connected_gene': 'SLC16A3', 'score': 21.78}, {'connected_gene': 'ENSG00000265678', 'score': 21.0}, {'connected_gene': 'TBCD', 'score': 19.44}, {'connected_gene': 'SECTM1', 'score': 16.4}, {'connected_gene': 'CCDC57', 'score': 14.52}, {'connected_gene': 'CD7', 'score': 13.17}, {'connected_gene': 'C17orf62', 'score': 13.12}, {'connected_gene': 'ACTG1', 'score': 12.87}, {'connected_gene': 'HEXDC', 'score': 12.21}, {'connected_gene': 'OGFOD3', 'score': 11.68}, {'connected_gene': 'ARHGDIA', 'score': 11.06}, {'connected_gene': 'LOC105371942', 'score': 10.86}, {'connected_gene': 'RFNG', 'score': 9.94}, {'connected_gene': 'FOXK2', 'score': 9.91}, {'connected_gene': 'CCDC137', 'score': 9.8}, {'connected_gene': 'UTS2R', 'score': 4.97}, {'connected_gene': 'SIRT7', 'score': 3.72}, {'connected_gene': 'NARF', 'score': 3.13}, {'connected_gene': 'MAFG', 'score': 1.48}, {'connected_gene': 'LINC01970', 'score': 0.44}]
chr17	GH17I081888	81888845	81893147	2.05	[{'connected_gene': 'ALYREF', 'score': 574.02}, {'connected_gene': 'ANAPC11', 'score': 550.77}, {'connected_gene': 'PIR40053', 'score': 550.77}, {'connected_gene': 'HGS', 'score': 22.85}, {'connected_gene': 'CSNK1D', 'score': 22.17}, {'connected_gene': 'ENSG00000260563', 'score': 20.67}, {'connected_gene': 'TEPSIN', 'score': 18.83}, {'connected_gene': 'LOC105371942', 'score': 17.69}, {'connected_gene': 'FAAP100', 'score': 14.18}, {'connected_gene': 'NARF-IT1', 'score': 14.15}, {'connected_gene': 'ENSG00000265678', 'score': 12.17}, {'connected_gene': 'HEXDC', 'score': 12.08}, {'connected_gene': 'DUS1L', 'score': 12.0}, {'connected_gene': 'CHMP6', 'score': 11.77}, {'connected_gene': 'CEP131', 'score': 11.5}, {'connected_gene': 'ENSG00000264769', 'score': 11.13}, {'connected_gene': 'ENSG00000262652', 'score': 10.89}, {'connected_gene': 'CD7', 'score': 10.73}, {'connected_gene': 'FOXK2', 'score': 10.44}, {'connected_gene': 'ARL2BPP9', 'score': 10.29}, {'connected_gene': 'C17orf62', 'score': 9.98}, {'connected_gene': 'SECTM1', 'score': 9.81}, {'connected_gene': 'NPLOC4', 'score': 9.71}]
chr17	GH17I081425	81425839	81425899	0.7	[{'connected_gene': 'ENSG00000262877', 'score': 24.38}, {'connected_gene': 'FAAP100', 'score': 15.43}, {'connected_gene': 'OGFOD3', 'score': 13.27}, {'connected_gene': 'ENSG00000265678', 'score': 12.82}, {'connected_gene': 'ENSG00000260011', 'score': 12.06}, {'connected_gene': 'CSNK1D', 'score': 11.02}, {'connected_gene': 'CD7', 'score': 10.71}, {'connected_gene': 'LOC100130370', 'score': 10.66}, {'connected_gene': 'HGS', 'score': 10.34}, {'connected_gene': 'ENSG00000260369', 'score': 10.22}, {'connected_gene': 'CCDC57', 'score': 10.2}, {'connected_gene': 'TEPSIN', 'score': 9.85}, {'connected_gene': 'BAHCC1', 'score': 1.5}, {'connected_gene': 'GCGR', 'score': 1.28}, {'connected_gene': 'GC17M081444', 'score': 0.34}, {'connected_gene': 'MIR4740', 'score': 0.31}]
chr17	GH17I082550	82550879	82550910	0.22	[{'connected_gene': 'GC17M082549', 'score': 550.77}, {'connected_gene': 'TEX19', 'score': 11.07}, {'connected_gene': 'CD7', 'score': 2.79}, {'connected_gene': 'CCDC57', 'score': 1.44}, {'connected_gene': 'ARL2BPP9', 'score': 0.31}, {'connected_gene': 'FOXK2', 'score': 0.29}]
chr17	GH17I082319	82319684	82322745	1.29	[{'connected_gene': 'GC17M082322', 'score': 550.77}, {'connected_gene': 'TEX19', 'score': 17.09}, {'connected_gene': 'ENSG00000260011', 'score': 8.0}, {'connected_gene': 'OGFOD3', 'score': 5.08}, {'connected_gene': 'CD7', 'score': 0.77}, {'connected_gene': 'SECTM1', 'score': 0.39}]