PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000303469	[[169761669, 169763038], [169763773, 169763830]]	[[169761717, 169762836]]
ENST00000310392	[[169761669, 169763038], [169763955, 169764107]]	[[169761717, 169762836]]
ENST00000454472	[[169762282, 169763038], [169764010, 169764104]]	[[169762282, 169762836]]
NM_001320201	[[169761669, 169763038], [169763773, 169763830]]	[[169761717, 169762836]]
NM_033418	[[169761669, 169763038], [169763955, 169764117]]	[[169761717, 169762836]]
NM_001320199	[[169761669, 169763038], [169764010, 169764117]]	[[169761717, 169762836]]

Promoter

Chrom	Start	End	Description
chr1	169763996	169764011	CAGE_peak_4_at_METTL18_5end
chr1	169764026	169764077	CAGE_peak_1_at_METTL18_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I170493	170493980	170495100	0.69	[{'connected_gene': 'GORAB', 'score': 23.31}, {'connected_gene': 'RN7SL333P', 'score': 13.52}, {'connected_gene': 'METTL18', 'score': 13.44}, {'connected_gene': 'LOC101928650', 'score': 11.97}, {'connected_gene': 'PRRC2C', 'score': 11.45}, {'connected_gene': 'GC01P170411', 'score': 0.18}]
chr1	GH01I170530	170530751	170533992	2.08	[{'connected_gene': 'GORAB', 'score': 564.18}, {'connected_gene': 'LOC101928650', 'score': 558.15}, {'connected_gene': 'C1orf112', 'score': 17.14}, {'connected_gene': 'SCYL3', 'score': 16.21}, {'connected_gene': 'PRRC2C', 'score': 16.07}, {'connected_gene': 'METTL18', 'score': 12.01}, {'connected_gene': 'RN7SL333P', 'score': 11.21}, {'connected_gene': 'ENSG00000271811', 'score': 7.03}]
chr1	GH01I169679	169679724	169682568	0.79	[{'connected_gene': 'METTL18', 'score': 23.71}, {'connected_gene': 'SELP', 'score': 10.78}, {'connected_gene': 'SELL', 'score': 5.67}, {'connected_gene': 'C1orf112', 'score': 0.37}]
chr1	GH01I169915	169915001	169915400	0.31	[{'connected_gene': 'METTL18', 'score': 34.09}, {'connected_gene': 'SCYL3', 'score': 12.18}, {'connected_gene': 'KIFAP3', 'score': 7.83}, {'connected_gene': 'GC01M169872', 'score': 0.34}, {'connected_gene': 'GC01P169942', 'score': 0.31}]
chr1	GH01I169916	169915740	169916070	0.82	[{'connected_gene': 'METTL18', 'score': 37.99}, {'connected_gene': 'SCYL3', 'score': 12.18}, {'connected_gene': 'GC01M169872', 'score': 0.34}, {'connected_gene': 'GC01P169942', 'score': 0.31}]
chr1	GH01I169741	169741415	169741429	0.46	[{'connected_gene': 'METTL18', 'score': 11.08}, {'connected_gene': 'C1orf112', 'score': 11.03}, {'connected_gene': 'SELP', 'score': 9.99}, {'connected_gene': 'GC01M169692', 'score': 0.37}, {'connected_gene': 'ENSG00000230704', 'score': 0.34}, {'connected_gene': 'SELE', 'score': 0.34}]
chr1	GH01I169744	169744868	169746386	0.85	[{'connected_gene': 'METTL18', 'score': 45.29}, {'connected_gene': 'C1orf112', 'score': 11.03}, {'connected_gene': 'SELP', 'score': 9.98}, {'connected_gene': 'ENSG00000230704', 'score': 0.37}, {'connected_gene': 'SELE', 'score': 0.37}, {'connected_gene': 'GC01M169692', 'score': 0.34}]
chr1	GH01I169688	169688301	169705691	1.4	[{'connected_gene': 'METTL18', 'score': 42.01}, {'connected_gene': 'C1orf112', 'score': 17.9}, {'connected_gene': 'SELP', 'score': 11.57}, {'connected_gene': 'F5', 'score': 11.47}, {'connected_gene': 'SELL', 'score': 10.04}, {'connected_gene': 'SCYL3', 'score': 6.95}, {'connected_gene': 'KIFAP3', 'score': 4.36}, {'connected_gene': 'ENSG00000230704', 'score': 4.33}, {'connected_gene': 'METTL11B', 'score': 2.5}, {'connected_gene': 'GC01M169692', 'score': 0.31}]
chr1	GH01I169793	169793917	169796209	2.07	[{'connected_gene': 'METTL18', 'score': 614.67}, {'connected_gene': 'C1orf112', 'score': 591.83}, {'connected_gene': 'SCYL3', 'score': 48.61}, {'connected_gene': 'RN7SL333P', 'score': 21.37}, {'connected_gene': 'KIFAP3', 'score': 8.5}]
chr1	GH01I169908	169908293	169909791	0.57	[{'connected_gene': 'METTL18', 'score': 40.09}, {'connected_gene': 'PRRX1', 'score': 9.23}, {'connected_gene': 'KIFAP3', 'score': 9.01}, {'connected_gene': 'GC01M169872', 'score': 0.39}, {'connected_gene': 'GC01P169942', 'score': 0.29}]
chr1	GH01I169998	169998147	170000381	0.49	[{'connected_gene': 'METTL18', 'score': 37.55}, {'connected_gene': 'KIFAP3', 'score': 25.35}, {'connected_gene': 'ENSG00000232959', 'score': 11.98}, {'connected_gene': 'MRPS10P1', 'score': 0.44}, {'connected_gene': 'GC01P169974', 'score': 0.34}, {'connected_gene': 'GC01M170021', 'score': 0.34}]
chr1	GH01I170126	170126483	170127449	0.6	[{'connected_gene': 'METTL18', 'score': 13.61}, {'connected_gene': 'KIFAP3', 'score': 11.22}, {'connected_gene': 'SIGLEC30P', 'score': 0.39}, {'connected_gene': 'METTL11B', 'score': 0.37}]
chr1	GH01I169873	169873922	169875085	0.59	[{'connected_gene': 'METTL18', 'score': 44.0}, {'connected_gene': 'KIFAP3', 'score': 8.43}, {'connected_gene': 'RN7SL333P', 'score': 0.39}, {'connected_gene': 'SCYL3', 'score': 0.37}, {'connected_gene': 'GC01M169872', 'score': 0.34}]
chr1	GH01I170062	170062651	170063756	0.76	[{'connected_gene': 'METTL18', 'score': 37.48}, {'connected_gene': 'KIFAP3', 'score': 25.85}, {'connected_gene': 'LOC105371608', 'score': 0.34}]
chr1	GH01I170162	170162392	170163490	0.51	[{'connected_gene': 'METTL18', 'score': 15.13}, {'connected_gene': 'KIFAP3', 'score': 9.73}, {'connected_gene': 'MIR3119-1', 'score': 0.39}, {'connected_gene': 'LINC01681', 'score': 0.39}, {'connected_gene': 'METTL11B', 'score': 0.37}, {'connected_gene': 'GC01M170154', 'score': 0.37}]
chr1	GH01I169934	169934500	169934629	0.76	[{'connected_gene': 'METTL18', 'score': 38.81}, {'connected_gene': 'KIFAP3', 'score': 10.01}, {'connected_gene': 'GC01P169942', 'score': 0.44}, {'connected_gene': 'GC01M169872', 'score': 0.28}]
chr1	GH01I169647	169647546	169649252	0.31	[{'connected_gene': 'METTL18', 'score': 23.57}, {'connected_gene': 'F5', 'score': 10.44}, {'connected_gene': 'GC01P169651', 'score': 0.77}, {'connected_gene': 'SELP', 'score': 0.37}]
chr1	GH01I169715	169715577	169719146	0.31	[{'connected_gene': 'METTL18', 'score': 31.15}, {'connected_gene': 'F5', 'score': 11.74}, {'connected_gene': 'SELE', 'score': 10.73}, {'connected_gene': 'GC01M169692', 'score': 0.44}, {'connected_gene': 'SELL', 'score': 0.44}, {'connected_gene': 'C1orf112', 'score': 0.22}]
chr1	GH01I169779	169779044	169782639	0.94	[{'connected_gene': 'METTL18', 'score': 39.88}, {'connected_gene': 'F5', 'score': 10.76}, {'connected_gene': 'CCDC181', 'score': 9.78}, {'connected_gene': 'SCYL3', 'score': 8.87}, {'connected_gene': 'LOC101928628', 'score': 0.37}, {'connected_gene': 'C1orf112', 'score': 0.13}]
chr1	GH01I169678	169678635	169679635	0.2	[{'connected_gene': 'SELP', 'score': 11.11}, {'connected_gene': 'METTL18', 'score': 9.61}, {'connected_gene': 'C1orf112', 'score': 0.37}, {'connected_gene': 'SELL', 'score': 0.29}]
chr1	GH01I169676	169676000	169676401	0.71	[{'connected_gene': 'SELP', 'score': 11.11}, {'connected_gene': 'METTL18', 'score': 7.74}, {'connected_gene': 'C1orf112', 'score': 0.39}, {'connected_gene': 'SELL', 'score': 0.28}]
chr1	GH01I169667	169667001	169668400	0.94	[{'connected_gene': 'SELP', 'score': 25.34}, {'connected_gene': 'METTL18', 'score': 13.5}, {'connected_gene': 'DPT', 'score': 10.11}, {'connected_gene': 'SELL', 'score': 9.98}, {'connected_gene': 'C1orf112', 'score': 0.44}]
chr1	GH01I169600	169600863	169602417	0.79	[{'connected_gene': 'SELP', 'score': 11.4}, {'connected_gene': 'C1orf112', 'score': 10.96}, {'connected_gene': 'METTL18', 'score': 10.83}, {'connected_gene': 'F5', 'score': 6.86}, {'connected_gene': 'SELL', 'score': 6.53}]
chr1	GH01I169608	169608001	169608673	0.2	[{'connected_gene': 'SELP', 'score': 12.03}, {'connected_gene': 'F5', 'score': 11.64}, {'connected_gene': 'C1orf112', 'score': 10.7}, {'connected_gene': 'METTL18', 'score': 10.56}, {'connected_gene': 'SELL', 'score': 6.96}]
chr1	GH01I169707	169707887	169712789	2.12	[{'connected_gene': 'SELL', 'score': 550.77}, {'connected_gene': 'METTL18', 'score': 40.93}, {'connected_gene': 'RN7SL333P', 'score': 27.73}, {'connected_gene': 'GORAB', 'score': 22.05}, {'connected_gene': 'SCYL3', 'score': 19.78}, {'connected_gene': 'C1orf112', 'score': 15.13}, {'connected_gene': 'GC01M169692', 'score': 0.39}]
chr1	GH01I169638	169638532	169639897	0.2	[{'connected_gene': 'SELE', 'score': 9.47}, {'connected_gene': 'METTL18', 'score': 8.12}, {'connected_gene': 'SELP', 'score': 0.44}, {'connected_gene': 'GC01P169651', 'score': 0.39}]
chr1	GH01I169889	169889465	169895007	2.59	[{'connected_gene': 'SCYL3', 'score': 574.38}, {'connected_gene': 'METTL18', 'score': 51.72}, {'connected_gene': 'C1orf112', 'score': 25.15}, {'connected_gene': 'KIFAP3', 'score': 17.0}, {'connected_gene': 'BLZF1', 'score': 11.6}, {'connected_gene': 'RN7SL333P', 'score': 11.48}, {'connected_gene': 'GC01M169872', 'score': 0.77}]
chr1	GH01I169089	169089753	169096440	0.69	[{'connected_gene': 'SCYL3', 'score': 14.03}, {'connected_gene': 'C1orf112', 'score': 11.94}, {'connected_gene': 'RN7SL333P', 'score': 11.31}, {'connected_gene': 'METTL18', 'score': 11.03}, {'connected_gene': 'BLZF1', 'score': 10.33}, {'connected_gene': 'SELP', 'score': 10.01}, {'connected_gene': 'LINC00970', 'score': 0.44}, {'connected_gene': 'LOC101928596', 'score': 0.39}]
chr1	GH01I169662	169662201	169662800	0.49	[{'connected_gene': 'C1orf112', 'score': 550.77}, {'connected_gene': 'METTL18', 'score': 12.91}, {'connected_gene': 'SELP', 'score': 11.38}, {'connected_gene': 'SELL', 'score': 9.46}]
chr1	GH01I169101	169101187	169115216	2.72	[{'connected_gene': 'ATP1B1', 'score': 559.71}, {'connected_gene': 'RN7SL333P', 'score': 13.52}, {'connected_gene': 'METTL18', 'score': 13.44}, {'connected_gene': 'LINC00970', 'score': 11.7}, {'connected_gene': 'NME7', 'score': 6.75}, {'connected_gene': 'CCDC181', 'score': 5.05}, {'connected_gene': 'RPL7AP21', 'score': 4.97}, {'connected_gene': 'XCL2', 'score': 4.22}, {'connected_gene': 'LOC101928596', 'score': 0.77}, {'connected_gene': 'PIR51723', 'score': 0.25}]
chr1	GH01I169362	169362412	169369565	2.47	[{'connected_gene': 'NME7', 'score': 579.09}, {'connected_gene': 'BLZF1', 'score': 550.77}, {'connected_gene': 'C1orf112', 'score': 23.76}, {'connected_gene': 'CCDC181', 'score': 19.63}, {'connected_gene': 'METTL18', 'score': 10.35}, {'connected_gene': 'ENSG00000235575', 'score': 0.22}]
chr1	GH01I170072	170072945	170075519	2.24	[{'connected_gene': 'KIFAP3', 'score': 565.36}, {'connected_gene': 'METTL18', 'score': 37.44}, {'connected_gene': 'C1orf112', 'score': 1.25}, {'connected_gene': 'GC01M170068', 'score': 0.37}, {'connected_gene': 'LOC105371608', 'score': 0.29}]
chr1	GH01I170067	170067245	170069400	1.52	[{'connected_gene': 'KIFAP3', 'score': 550.37}, {'connected_gene': 'METTL18', 'score': 37.45}, {'connected_gene': 'GC01M170068', 'score': 0.34}, {'connected_gene': 'LOC105371608', 'score': 0.31}]
chr1	GH01I169571	169571508	169573157	1.01	[{'connected_gene': 'F5', 'score': 11.09}, {'connected_gene': 'C1orf112', 'score': 9.9}, {'connected_gene': 'METTL18', 'score': 9.8}, {'connected_gene': 'SELE', 'score': 9.66}, {'connected_gene': 'SCYL3', 'score': 1.4}, {'connected_gene': 'GC01P169565', 'score': 0.44}]
chr1	GH01I170145	170145879	170146554	1.21	[{'connected_gene': 'METTL11B', 'score': 550.77}, {'connected_gene': 'KIFAP3', 'score': 21.95}, {'connected_gene': 'METTL18', 'score': 14.58}, {'connected_gene': 'MIR3119-2', 'score': 0.44}]
chr1	GH01I169941	169941255	169943938	1.11	[{'connected_gene': 'GC01P169942', 'score': 550.77}, {'connected_gene': 'METTL18', 'score': 47.88}, {'connected_gene': 'C1orf112', 'score': 24.36}, {'connected_gene': 'GORAB', 'score': 12.7}, {'connected_gene': 'SCYL3', 'score': 12.48}, {'connected_gene': 'RN7SL333P', 'score': 10.1}, {'connected_gene': 'GC01M169872', 'score': 0.25}, {'connected_gene': 'KIFAP3', 'score': 0.11}]
chr1	GH01I169721	169721757	169724999	0.43	[{'connected_gene': 'GC01M169692', 'score': 550.77}, {'connected_gene': 'METTL18', 'score': 41.62}, {'connected_gene': 'F5', 'score': 10.78}, {'connected_gene': 'C1orf112', 'score': 10.59}, {'connected_gene': 'SCYL3', 'score': 6.62}, {'connected_gene': 'SELL', 'score': 0.39}, {'connected_gene': 'SELE', 'score': 0.26}]
chr1	GH01I169308	169308383	169310319	1.11	[{'connected_gene': 'ENSG00000235575', 'score': 550.77}, {'connected_gene': 'NME7', 'score': 32.1}, {'connected_gene': 'SCYL3', 'score': 22.68}, {'connected_gene': 'RN7SL333P', 'score': 16.76}, {'connected_gene': 'METTL18', 'score': 14.47}, {'connected_gene': 'C1orf112', 'score': 12.02}, {'connected_gene': 'ATP1B1', 'score': 9.81}, {'connected_gene': 'LOC101928596', 'score': 9.81}, {'connected_gene': 'GC01P169297', 'score': 0.37}, {'connected_gene': 'GC01P169294', 'score': 0.37}, {'connected_gene': 'GC01P169296', 'score': 0.37}]
chr1	GH01I169649	169649258	169649968	0.2	[{'connected_gene': 'GC01P169651', 'score': 550.77}, {'connected_gene': 'F5', 'score': 10.44}, {'connected_gene': 'METTL18', 'score': 6.45}, {'connected_gene': 'SELP', 'score': 0.37}]
chr1	GH01I169482	169482741	169488400	2.32	[{'connected_gene': 'ENSG00000213062', 'score': 558.34}, {'connected_gene': 'GC01P169486', 'score': 550.77}, {'connected_gene': 'SLC19A2', 'score': 550.77}, {'connected_gene': 'SCYL3', 'score': 24.14}, {'connected_gene': 'METTL18', 'score': 17.93}, {'connected_gene': 'RN7SL333P', 'score': 16.78}, {'connected_gene': 'NME7', 'score': 13.69}, {'connected_gene': 'C1orf112', 'score': 12.07}, {'connected_gene': 'CCDC181', 'score': 10.78}, {'connected_gene': 'PIR61656', 'score': 0.44}]