PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000359315	[[507298, 507844], [518888, 519654]]	[[507506, 507844], [518888, 519423]]
ENST00000588278	[[507499, 510372]]	None
NM_033513	[[507496, 507844], [518888, 519654]]	[[507506, 507844], [518888, 519423]]

Promoter

Chrom	Start	End	Description
chr19	507487	507508	CAGE_peak_1_at_TPGS1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr19	GH19I000502	502921	503050	0.76	[{'connected_gene': 'TPGS1', 'score': 0.77}, {'connected_gene': 'LOC105372232', 'score': 0.77}, {'connected_gene': 'MADCAM1', 'score': 0.39}]
chr19	GH19I000506	506251	508939	2.28	[{'connected_gene': 'TPGS1', 'score': 550.77}, {'connected_gene': 'LOC105372232', 'score': 550.77}, {'connected_gene': 'DAZAP1', 'score': 12.17}, {'connected_gene': 'MIER2', 'score': 10.03}, {'connected_gene': 'MADCAM1', 'score': 6.43}, {'connected_gene': 'C2CD4C', 'score': 4.8}]
chr19	GH19I000493	493027	496630	1.63	[{'connected_gene': 'MADCAM1', 'score': 554.98}, {'connected_gene': 'TMEM259', 'score': 26.36}, {'connected_gene': 'PTBP1', 'score': 24.57}, {'connected_gene': 'DAZAP1', 'score': 24.32}, {'connected_gene': 'CIRBP', 'score': 21.68}, {'connected_gene': 'MED16', 'score': 18.75}, {'connected_gene': 'LOC105372232', 'score': 13.87}, {'connected_gene': 'ENSG00000267317', 'score': 13.85}, {'connected_gene': 'SHC2', 'score': 13.25}, {'connected_gene': 'MIER2', 'score': 12.14}, {'connected_gene': 'RPS15', 'score': 11.52}, {'connected_gene': 'GRIN3B', 'score': 10.88}, {'connected_gene': 'POLRMT', 'score': 9.95}, {'connected_gene': 'TPGS1', 'score': 0.39}]
chr19	GH19I000491	491400	492401	0.96	[{'connected_gene': 'MADCAM1', 'score': 13.04}, {'connected_gene': 'C19orf25', 'score': 5.27}, {'connected_gene': 'TPGS1', 'score': 0.37}, {'connected_gene': 'LOC105372232', 'score': 0.37}]
chr19	GH19I000514	514041	515170	0.62	[{'connected_gene': 'BSG', 'score': 11.77}, {'connected_gene': 'TPGS1', 'score': 0.44}, {'connected_gene': 'LOC105372232', 'score': 0.44}, {'connected_gene': 'CDC34', 'score': 0.37}]
chr19	GH19I000510	510241	513382	1.72	[{'connected_gene': 'GZMM', 'score': 20.59}, {'connected_gene': 'TPGS1', 'score': 6.48}, {'connected_gene': 'MADCAM1', 'score': 5.61}, {'connected_gene': 'RNF126', 'score': 4.39}, {'connected_gene': 'LOC105372232', 'score': 0.77}, {'connected_gene': 'CDC34', 'score': 0.37}]
chr19	GH19I000516	516541	519840	1.34	[{'connected_gene': 'DAZAP1', 'score': 16.4}, {'connected_gene': 'TMEM259', 'score': 15.98}, {'connected_gene': 'CFD', 'score': 14.79}, {'connected_gene': 'MIER2', 'score': 12.5}, {'connected_gene': 'PTBP1', 'score': 11.95}, {'connected_gene': 'BSG', 'score': 11.78}, {'connected_gene': 'MED16', 'score': 11.44}, {'connected_gene': 'ENSG00000267317', 'score': 11.29}, {'connected_gene': 'RNF126', 'score': 10.62}, {'connected_gene': 'GRIN3B', 'score': 10.53}, {'connected_gene': 'MIDN', 'score': 10.38}, {'connected_gene': 'CNN2', 'score': 9.81}, {'connected_gene': 'TPGS1', 'score': 6.52}, {'connected_gene': 'LOC105372232', 'score': 0.39}, {'connected_gene': 'CDC34', 'score': 0.39}]
chr19	GH19I000867	867005	867400	0.69	[{'connected_gene': 'CFD', 'score': 22.93}, {'connected_gene': 'MED16', 'score': 8.78}, {'connected_gene': 'ODF3L2', 'score': 4.95}, {'connected_gene': 'ATP5F1D', 'score': 4.34}, {'connected_gene': 'GPX4', 'score': 4.21}, {'connected_gene': 'TPGS1', 'score': 3.69}, {'connected_gene': 'CNN2', 'score': 2.75}, {'connected_gene': 'POLRMT', 'score': 2.16}, {'connected_gene': 'BSG', 'score': 1.73}, {'connected_gene': 'C19orf24', 'score': 1.17}, {'connected_gene': 'PIR33777', 'score': 0.44}]
chr19	GH19I000747	747240	756590	2.13	[{'connected_gene': 'MISP', 'score': 572.73}, {'connected_gene': 'PRTN3', 'score': 13.31}, {'connected_gene': 'ELANE', 'score': 13.29}, {'connected_gene': 'CFD', 'score': 13.28}, {'connected_gene': 'FSTL3', 'score': 5.59}, {'connected_gene': 'PLPP2', 'score': 3.12}, {'connected_gene': 'TPGS1', 'score': 1.39}, {'connected_gene': 'GC19P000749', 'score': 0.77}, {'connected_gene': 'GC19P000763', 'score': 0.39}, {'connected_gene': 'PALM', 'score': 0.26}]