PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000344157	[[69176104, 69180041], [69182031, 69182166], [69184236, 69184299], [69184407, 69184447], [69184543, 69184580], [69185840, 69185923], [69188466, 69188633], [69189856, 69189941], [69195719, 69195837], [69195919, 69196028], [69197820, 69197915], [69198511, 69198565], [69199025, 69199115], [69202744, 69203168], [69203289, 69203618], [69204000, 69204102], [69215443, 69215807]]	[[69179816, 69180041], [69182031, 69182166], [69184236, 69184299], [69184407, 69184447], [69184543, 69184580], [69185840, 69185923], [69188466, 69188633], [69189856, 69189941], [69195719, 69195837], [69195919, 69196028], [69197820, 69197915], [69198511, 69198565], [69199025, 69199115], [69202744, 69203168], [69203289, 69203618], [69204000, 69204102], [69215443, 69215471]]
ENST00000355665	[[69179038, 69180041], [69182031, 69182166], [69184236, 69184299], [69184407, 69184447], [69184543, 69184580], [69185840, 69185923], [69188466, 69188633], [69189856, 69189941], [69195719, 69195837], [69195919, 69196028], [69197820, 69197915], [69199025, 69199115], [69202744, 69203168], [69203289, 69203618], [69204000, 69204102], [69215443, 69215807]]	[[69179816, 69180041], [69182031, 69182166], [69184236, 69184299], [69184407, 69184447], [69184543, 69184580], [69185840, 69185923], [69188466, 69188633], [69189856, 69189941], [69195719, 69195837], [69195919, 69196028], [69197820, 69197915], [69199025, 69199115], [69202744, 69203168], [69203289, 69203618], [69204000, 69204102], [69215443, 69215471]]
ENST00000579690	[[69179041, 69180041], [69182031, 69182166], [69184236, 69184299], [69184407, 69184471], [69184543, 69184580], [69185840, 69185923], [69188466, 69188633], [69189856, 69189941], [69195719, 69195837], [69195919, 69196028], [69197820, 69197915], [69198511, 69198565], [69199025, 69199115], [69202744, 69203168], [69203289, 69203618], [69204000, 69204102], [69215443, 69215471]]	[[69179816, 69180041], [69182031, 69182166], [69184236, 69184299], [69184407, 69184471], [69184543, 69184580], [69185840, 69185923], [69188466, 69188633], [69189856, 69189941], [69195719, 69195837], [69195919, 69196028], [69197820, 69197915], [69198511, 69198565], [69199025, 69199115], [69202744, 69203168], [69203289, 69203618], [69204000, 69204102], [69215443, 69215471]]
ENST00000510746	[[69203557, 69203618], [69204000, 69204102], [69209766, 69209798], [69215443, 69215763]]	[[69203557, 69203595]]
ENST00000507529	[[69181572, 69182166], [69184236, 69184299], [69184407, 69184439]]	[[69181980, 69182166], [69184236, 69184299], [69184407, 69184439]]
ENST00000506175	[[69188209, 69188633], [69189856, 69189941], [69195719, 69195791]]	None
ENST00000505251	[[69203483, 69203618], [69204000, 69204130]]	[[69203483, 69203595]]
NM_001330698	[[69176104, 69180041], [69182031, 69182166], [69184236, 69184299], [69184407, 69184471], [69184543, 69184580], [69185840, 69185923], [69188466, 69188633], [69189856, 69189941], [69195719, 69195837], [69195919, 69196028], [69197820, 69197915], [69198511, 69198565], [69199025, 69199115], [69202744, 69203168], [69203289, 69203618], [69204000, 69204102], [69215443, 69215835]]	[[69179816, 69180041], [69182031, 69182166], [69184236, 69184299], [69184407, 69184471], [69184543, 69184580], [69185840, 69185923], [69188466, 69188633], [69189856, 69189941], [69195719, 69195837], [69195919, 69196028], [69197820, 69197915], [69198511, 69198565], [69199025, 69199115], [69202744, 69203168], [69203289, 69203618], [69204000, 69204102], [69215443, 69215471]]
NM_001031732	[[69176104, 69180041], [69182031, 69182166], [69184236, 69184299], [69184407, 69184447], [69184543, 69184580], [69185840, 69185923], [69188466, 69188633], [69189856, 69189941], [69195719, 69195837], [69195919, 69196028], [69197820, 69197915], [69198511, 69198565], [69199025, 69199115], [69202744, 69203168], [69203289, 69203618], [69204000, 69204102], [69215443, 69215835]]	[[69179816, 69180041], [69182031, 69182166], [69184236, 69184299], [69184407, 69184447], [69184543, 69184580], [69185840, 69185923], [69188466, 69188633], [69189856, 69189941], [69195719, 69195837], [69195919, 69196028], [69197820, 69197915], [69198511, 69198565], [69199025, 69199115], [69202744, 69203168], [69203289, 69203618], [69204000, 69204102], [69215443, 69215471]]
NM_133370	[[69176104, 69180041], [69182031, 69182166], [69184236, 69184299], [69184407, 69184447], [69184543, 69184580], [69185840, 69185923], [69188466, 69188633], [69189856, 69189941], [69195719, 69195837], [69195919, 69196028], [69197820, 69197915], [69199025, 69199115], [69202744, 69203168], [69203289, 69203618], [69204000, 69204102], [69215443, 69215835]]	[[69179816, 69180041], [69182031, 69182166], [69184236, 69184299], [69184407, 69184447], [69184543, 69184580], [69185840, 69185923], [69188466, 69188633], [69189856, 69189941], [69195719, 69195837], [69195919, 69196028], [69197820, 69197915], [69199025, 69199115], [69202744, 69203168], [69203289, 69203618], [69204000, 69204102], [69215443, 69215471]]
NM_001330698	[[6026, 9963], [11953, 12088], [14158, 14221], [14329, 14393], [14465, 14502], [15762, 15845], [18388, 18555], [19778, 19863], [25641, 25759], [25841, 25950], [27742, 27837], [28433, 28487], [28947, 29037], [32666, 33090], [33211, 33540], [33922, 34024], [45365, 45757]]	[[9738, 9963], [11953, 12088], [14158, 14221], [14329, 14393], [14465, 14502], [15762, 15845], [18388, 18555], [19778, 19863], [25641, 25759], [25841, 25950], [27742, 27837], [28433, 28487], [28947, 29037], [32666, 33090], [33211, 33540], [33922, 34024], [45365, 45393]]
NM_001031732	[[6026, 9963], [11953, 12088], [14158, 14221], [14329, 14369], [14465, 14502], [15762, 15845], [18388, 18555], [19778, 19863], [25641, 25759], [25841, 25950], [27742, 27837], [28433, 28487], [28947, 29037], [32666, 33090], [33211, 33540], [33922, 34024], [45365, 45757]]	[[9738, 9963], [11953, 12088], [14158, 14221], [14329, 14369], [14465, 14502], [15762, 15845], [18388, 18555], [19778, 19863], [25641, 25759], [25841, 25950], [27742, 27837], [28433, 28487], [28947, 29037], [32666, 33090], [33211, 33540], [33922, 34024], [45365, 45393]]
NM_133370	[[6026, 9963], [11953, 12088], [14158, 14221], [14329, 14369], [14465, 14502], [15762, 15845], [18388, 18555], [19778, 19863], [25641, 25759], [25841, 25950], [27742, 27837], [28947, 29037], [32666, 33090], [33211, 33540], [33922, 34024], [45365, 45757]]	[[9738, 9963], [11953, 12088], [14158, 14221], [14329, 14369], [14465, 14502], [15762, 15845], [18388, 18555], [19778, 19863], [25641, 25759], [25841, 25950], [27742, 27837], [28947, 29037], [32666, 33090], [33211, 33540], [33922, 34024], [45365, 45393]]

Promoter

Chrom	Start	End	Description
chr4	69203316	69203320	CAGE_peak_4_at_YTHDC1_5end
chr4	69215467	69215532	CAGE_peak_2_at_YTHDC1_5end
chr4	69215679	69215688	CAGE_peak_3_at_YTHDC1_5end
chr4	69215699	69215815	CAGE_peak_1_at_YTHDC1_5end
chr4	69215819	69215828	CAGE_peak_5_at_YTHDC1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr4	GH04I068372	68372340	68374352	1.03	[{'connected_gene': 'YTHDC1', 'score': 12.77}, {'connected_gene': 'MT2P1', 'score': 0.77}]
chr4	GH04I068389	68389603	68389832	0.2	[{'connected_gene': 'YTHDC1', 'score': 11.48}, {'connected_gene': 'TMPRSS11E', 'score': 11.05}, {'connected_gene': 'UGT2B29P', 'score': 4.84}, {'connected_gene': 'MT2P1', 'score': 0.39}]
chr4	GH04I068388	68388390	68389140	0.2	[{'connected_gene': 'YTHDC1', 'score': 11.48}, {'connected_gene': 'TMPRSS11E', 'score': 11.05}, {'connected_gene': 'MT2P1', 'score': 0.39}]
chr4	GH04I068346	68346202	68351374	2.46	[{'connected_gene': 'YTHDC1', 'score': 564.85}, {'connected_gene': 'CENPC', 'score': 29.78}, {'connected_gene': 'UBA6', 'score': 19.6}, {'connected_gene': 'ENSG00000270257', 'score': 10.68}, {'connected_gene': 'UGT2B29P', 'score': 4.52}, {'connected_gene': 'TMPRSS11BNL', 'score': 4.38}, {'connected_gene': 'APOOP4', 'score': 0.26}]
chr4	GH04I068341	68341515	68342551	0.31	[{'connected_gene': 'YTHDC1', 'score': 0.44}, {'connected_gene': 'APOOP4', 'score': 0.28}]
chr4	GH04I068334	68334133	68334929	0.2	[{'connected_gene': 'YTHDC1', 'score': 0.37}, {'connected_gene': 'APOOP4', 'score': 0.31}]
chr4	GH04I068343	68343001	68343200	0.4	[{'connected_gene': 'YTHDC1', 'score': 0.44}, {'connected_gene': 'APOOP4', 'score': 0.28}]
chr4	GH04I067697	67697786	67702591	2.45	[{'connected_gene': 'UBA6', 'score': 594.91}, {'connected_gene': 'UBA6-AS1', 'score': 571.97}, {'connected_gene': 'CENPC', 'score': 30.56}, {'connected_gene': 'YTHDC1', 'score': 13.23}, {'connected_gene': 'ENSG00000270257', 'score': 11.97}, {'connected_gene': 'STAP1', 'score': 10.92}, {'connected_gene': 'TMPRSS11D', 'score': 9.67}, {'connected_gene': 'GC04P067653', 'score': 0.25}]
chr4	GH04I068366	68366219	68371008	1.08	[{'connected_gene': 'UGT2B29P', 'score': 5.52}, {'connected_gene': 'TMPRSS11BNL', 'score': 4.34}, {'connected_gene': 'MT2P1', 'score': 0.44}, {'connected_gene': 'YTHDC1', 'score': 0.37}]
chr4	GH04I068376	68376083	68376401	1.36	[{'connected_gene': 'MT2P1', 'score': 550.77}, {'connected_gene': 'YTHDC1', 'score': 12.75}]
chr4	GH04I068339	68339284	68340798	0.2	[{'connected_gene': 'TMPRSS11BNL', 'score': 4.4}, {'connected_gene': 'YTHDC1', 'score': 0.39}, {'connected_gene': 'APOOP4', 'score': 0.28}]
chr4	GH04I068360	68360231	68362223	1.29	[{'connected_gene': 'TMPRSS11BNL', 'score': 4.81}, {'connected_gene': 'UGT2B29P', 'score': 4.52}, {'connected_gene': 'YTHDC1', 'score': 0.39}, {'connected_gene': 'MT2P1', 'score': 0.37}]
chr4	GH04I068353	68353291	68353526	0.22	[{'connected_gene': 'TMPRSS11BNL', 'score': 4.79}, {'connected_gene': 'UGT2B29P', 'score': 4.42}, {'connected_gene': 'YTHDC1', 'score': 0.77}, {'connected_gene': 'MT2P1', 'score': 0.34}]
chr4	GH04I068267	68266352	68266744	0.46	[{'connected_gene': 'TMPRSS11B', 'score': 11.36}, {'connected_gene': 'YTHDC1', 'score': 10.98}, {'connected_gene': 'GCOM2', 'score': 6.82}, {'connected_gene': 'ENSG00000250642', 'score': 0.37}]
chr4	GH04I068266	68266939	68268576	0.9	[{'connected_gene': 'TMPRSS11B', 'score': 11.36}, {'connected_gene': 'YTHDC1', 'score': 10.98}, {'connected_gene': 'GCOM2', 'score': 4.81}, {'connected_gene': 'ENSG00000250642', 'score': 0.37}]
chr4	GH04I068271	68271774	68274587	0.8	[{'connected_gene': 'TMPRSS11B', 'score': 11.34}, {'connected_gene': 'YTHDC1', 'score': 10.98}, {'connected_gene': 'GCOM2', 'score': 6.03}, {'connected_gene': 'ENSG00000250642', 'score': 0.39}]
chr4	GH04I067543	67543755	67546510	2.23	[{'connected_gene': 'CENPC', 'score': 593.82}, {'connected_gene': 'UBA6', 'score': 24.54}, {'connected_gene': 'YTHDC1', 'score': 13.46}, {'connected_gene': 'LOC101927237', 'score': 11.52}, {'connected_gene': 'ENSG00000270257', 'score': 10.95}, {'connected_gene': 'STAP1', 'score': 10.02}, {'connected_gene': 'GCOM2', 'score': 4.31}, {'connected_gene': 'GC04M067379', 'score': 0.37}]
chr4	GH04I068344	68344401	68345600	0.69	[{'connected_gene': 'APOOP4', 'score': 4.96}, {'connected_gene': 'TMPRSS11BNL', 'score': 4.33}, {'connected_gene': 'YTHDC1', 'score': 0.44}]
chr4	GH04I067720	67720410	67722857	1.39	[{'connected_gene': 'PIR51733', 'score': 550.77}, {'connected_gene': 'PIR61967', 'score': 550.77}, {'connected_gene': 'UBA6', 'score': 33.34}, {'connected_gene': 'UBA6-AS1', 'score': 21.88}, {'connected_gene': 'CENPC', 'score': 19.77}, {'connected_gene': 'YTHDC1', 'score': 13.23}, {'connected_gene': 'ENSG00000270257', 'score': 11.94}, {'connected_gene': 'GNRHR', 'score': 11.15}, {'connected_gene': 'LOC100419862', 'score': 0.77}, {'connected_gene': 'GC04P067653', 'score': 0.2}]