PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000308377	[[33677323, 33680158], [33680354, 33681078], [33687261, 33687390], [33689757, 33690845], [33700492, 33700626]]	[[33679374, 33680158], [33680354, 33681078], [33687261, 33687390], [33689757, 33690826]]
ENST00000394566	[[33677323, 33680158], [33680354, 33681078], [33687261, 33687390], [33689757, 33690845], [33693965, 33694082], [33694621, 33694719], [33700600, 33700639]]	[[33679374, 33680158], [33680354, 33681078], [33687261, 33687390], [33689757, 33690826]]
ENST00000592108	[[33678917, 33679894], [33680003, 33680150]]	[[33679889, 33679894], [33680003, 33680150]]
ENST00000586099	[[33687037, 33687390], [33689785, 33690011]]	None
ENST00000591682	[[33690457, 33690845], [33693965, 33694062], [33700492, 33700641]]	[[33690457, 33690826]]
ENST00000441608	[[33690491, 33690845], [33693965, 33694082], [33694621, 33694719], [33700492, 33700714]]	[[33690491, 33690826]]
ENST00000589811	[[33690525, 33690845], [33693965, 33694082], [33700492, 33700639]]	[[33690525, 33690826]]
ENST00000430814	[[33690554, 33690845], [33693965, 33694082], [33694668, 33694719], [33700492, 33700639]]	[[33690554, 33690826]]
ENST00000427966	[[33690555, 33690845], [33693965, 33694082], [33694559, 33694719], [33700492, 33700639]]	[[33690555, 33690826]]
ENST00000588579	[[33690586, 33690845], [33693965, 33694082], [33694559, 33694719], [33700600, 33700639]]	[[33690586, 33690826]]
ENST00000589562	[[33690640, 33690845], [33693965, 33694313]]	None
ENST00000592122	[[33690680, 33690845], [33693965, 33694062], [33694621, 33694719], [33700492, 33700720]]	[[33690680, 33690826]]
ENST00000498396	[[33694284, 33694719], [33700492, 33700639]]	None
NM_001104587	[[33677323, 33680158], [33680354, 33681078], [33687261, 33687390], [33689757, 33690845], [33693965, 33694082], [33694559, 33694719], [33700492, 33700720]]	[[33679374, 33680158], [33680354, 33681078], [33687261, 33687390], [33689757, 33690826]]
NM_001104588	[[33677323, 33680158], [33680354, 33681078], [33687261, 33687390], [33689757, 33690845], [33693965, 33694062], [33694621, 33694719], [33700492, 33700720]]	[[33679374, 33680158], [33680354, 33681078], [33687261, 33687390], [33689757, 33690826]]
NM_001104589	[[33677323, 33680158], [33680354, 33681078], [33687261, 33687390], [33689757, 33690845], [33693965, 33694082], [33700492, 33700720]]	[[33679374, 33680158], [33680354, 33681078], [33687261, 33687390], [33689757, 33690826]]
NM_152270	[[33677323, 33680158], [33680354, 33681078], [33687261, 33687390], [33689757, 33690845], [33700492, 33700720]]	[[33679374, 33680158], [33680354, 33681078], [33687261, 33687390], [33689757, 33690826]]
NM_001104590	[[33677323, 33680158], [33680354, 33681078], [33687261, 33687390], [33689757, 33690845], [33693965, 33694082], [33694621, 33694719], [33700600, 33700720]]	[[33679374, 33680158], [33680354, 33681078], [33687261, 33687390], [33689757, 33690826]]

Promoter

Chrom	Start	End	Description
chr17	33700632	33700648	CAGE_peak_1_at_SLFN11_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr17	GH17I035372	35372600	35375355	1.93	[{'connected_gene': 'SLFN11', 'score': 576.65}, {'connected_gene': 'LOC105371933', 'score': 550.77}, {'connected_gene': 'GC17M035325', 'score': 550.77}, {'connected_gene': 'LIG3', 'score': 30.48}, {'connected_gene': 'ZNF830', 'score': 21.09}, {'connected_gene': 'SLFN12', 'score': 18.69}, {'connected_gene': 'ENSG00000267102', 'score': 11.28}, {'connected_gene': 'ENSG00000267648', 'score': 10.52}, {'connected_gene': 'SLFN14', 'score': 9.96}, {'connected_gene': 'RFFL', 'score': 5.51}, {'connected_gene': 'E2F3P1', 'score': 5.41}, {'connected_gene': 'SLFN5', 'score': 4.72}, {'connected_gene': 'LOC729835', 'score': 0.77}]
chr17	GH17I035341	35341511	35342328	0.74	[{'connected_gene': 'SLFN11', 'score': 6.29}, {'connected_gene': 'LOC101060119', 'score': 0.77}, {'connected_gene': 'GC17P035345', 'score': 0.77}, {'connected_gene': 'GC17M035325', 'score': 0.29}]
chr17	GH17I035367	35367228	35369231	0.8	[{'connected_gene': 'SLFN12', 'score': 9.95}, {'connected_gene': 'LOC105371933', 'score': 0.77}, {'connected_gene': 'SLFN11', 'score': 0.44}, {'connected_gene': 'GC17M035325', 'score': 0.44}, {'connected_gene': 'GC17P035345', 'score': 0.34}]
chr17	GH17I035529	35529366	35532940	0.93	[{'connected_gene': 'SLFN5', 'score': 16.63}, {'connected_gene': 'AP2B1', 'score': 11.1}, {'connected_gene': 'SLFN13', 'score': 10.93}, {'connected_gene': 'NLE1', 'score': 9.8}, {'connected_gene': 'SLFN12L', 'score': 5.4}, {'connected_gene': 'RASL10B', 'score': 5.14}, {'connected_gene': 'SLFN12', 'score': 4.93}, {'connected_gene': 'CCL5', 'score': 4.74}, {'connected_gene': 'SLFN11', 'score': 4.43}, {'connected_gene': 'RFFL', 'score': 1.84}, {'connected_gene': 'GC17P035523', 'score': 0.44}]
chr17	GH17I035345	35345201	35347399	1	[{'connected_gene': 'RFFL', 'score': 6.47}, {'connected_gene': 'SLFN5', 'score': 6.21}, {'connected_gene': 'SLFN11', 'score': 6.19}, {'connected_gene': 'ZNF830', 'score': 1.47}, {'connected_gene': 'SLFN14', 'score': 1.3}, {'connected_gene': 'GC17P035345', 'score': 0.77}, {'connected_gene': 'LOC105371933', 'score': 0.31}, {'connected_gene': 'GC17M035325', 'score': 0.31}]
chr17	GH17I035533	35533194	35542151	2.13	[{'connected_gene': 'SLFN12L', 'score': 565.18}, {'connected_gene': 'AP2B1', 'score': 15.59}, {'connected_gene': 'CCL5', 'score': 13.23}, {'connected_gene': 'ZNF830', 'score': 12.83}, {'connected_gene': 'PEX12', 'score': 12.06}, {'connected_gene': 'LIG3', 'score': 11.68}, {'connected_gene': 'SLFN5', 'score': 7.32}, {'connected_gene': 'TAF5LP1', 'score': 6.78}, {'connected_gene': 'GAS2L2', 'score': 5.5}, {'connected_gene': 'SLFN11', 'score': 5.33}, {'connected_gene': 'CCL14', 'score': 4.84}, {'connected_gene': 'RFFL', 'score': 4.25}, {'connected_gene': 'CCL23', 'score': 1.28}, {'connected_gene': 'ENSG00000267035', 'score': 0.77}, {'connected_gene': 'GC17P035523', 'score': 0.39}]