PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000369849	[[105036919, 105038033], [105046791, 105046916], [105048116, 105050108]]	[[105036968, 105038033], [105046791, 105046916], [105048116, 105048426]]
NM_032727	[[105036919, 105038033], [105046791, 105046916], [105048116, 105050108]]	[[105036968, 105038033], [105046791, 105046916], [105048116, 105048426]]

Promoter

Chrom	Start	End	Description
chr10	105036887	105036903	CAGE_peak_1_at_INA_5end
chr10	105036909	105036920	CAGE_peak_3_at_INA_5end
chr10	105037220	105037227	CAGE_peak_12_at_INA_5end
chr10	105037392	105037510	CAGE_peak_2_at_INA_5end
chr10	105037529	105037542	CAGE_peak_6_at_INA_5end
chr10	105037579	105037596	CAGE_peak_7_at_INA_5end
chr10	105037601	105037624	CAGE_peak_4_at_INA_5end
chr10	105037641	105037652	CAGE_peak_16_at_INA_5end
chr10	105049488	105049499	CAGE_peak_8_at_INA_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr10	GH10I103277	103277024	103277827	1.25	[{'connected_gene': 'INA', 'score': 550.77}, {'connected_gene': 'RPEL1', 'score': 12.5}, {'connected_gene': 'RNU11-3P', 'score': 0.28}, {'connected_gene': 'GC10M103313', 'score': 0.28}]
chr10	GH10I103265	103265804	103265993	0.86	[{'connected_gene': 'INA', 'score': 0.39}, {'connected_gene': 'RPEL1', 'score': 0.34}]
chr10	GH10I103255	103255044	103255273	0.69	[{'connected_gene': 'INA', 'score': 12.66}, {'connected_gene': 'PTGES3P4', 'score': 10.82}, {'connected_gene': 'PFN1P11', 'score': 10.82}, {'connected_gene': 'CYP17A1', 'score': 10.81}, {'connected_gene': 'RPEL1', 'score': 0.44}]
chr10	GH10I103254	103254592	103254889	0.65	[{'connected_gene': 'INA', 'score': 12.66}, {'connected_gene': 'PTGES3P4', 'score': 10.82}, {'connected_gene': 'PFN1P11', 'score': 10.82}, {'connected_gene': 'CYP17A1', 'score': 10.81}, {'connected_gene': 'RPEL1', 'score': 0.44}]
chr10	GH10I103226	103226654	103233678	1.11	[{'connected_gene': 'INA', 'score': 11.36}, {'connected_gene': 'RNU11-3P', 'score': 10.95}, {'connected_gene': 'CNNM2', 'score': 10.86}, {'connected_gene': 'PCGF6', 'score': 10.73}, {'connected_gene': 'PTGES3P4', 'score': 10.17}, {'connected_gene': 'PFN1P11', 'score': 10.17}, {'connected_gene': 'CYP17A1', 'score': 10.17}, {'connected_gene': 'AS3MT', 'score': 10.07}, {'connected_gene': 'BORCS7', 'score': 9.87}, {'connected_gene': 'ST13P13', 'score': 0.39}, {'connected_gene': 'RPEL1', 'score': 0.37}]
chr10	GH10I103281	103281404	103282300	0.9	[{'connected_gene': 'INA', 'score': 0.77}, {'connected_gene': 'RNU11-3P', 'score': 0.29}, {'connected_gene': 'GC10M103313', 'score': 0.29}]
chr10	GH10I103244	103244601	103244933	0.96	[{'connected_gene': 'RPEL1', 'score': 550.77}, {'connected_gene': 'INA', 'score': 11.64}, {'connected_gene': 'RNU11-3P', 'score': 11.05}, {'connected_gene': 'CNNM2', 'score': 11.03}, {'connected_gene': 'CYP17A1', 'score': 10.09}, {'connected_gene': 'MIR1307', 'score': 9.88}, {'connected_gene': 'ATP5MD', 'score': 9.87}, {'connected_gene': 'PDCD11', 'score': 9.87}, {'connected_gene': 'AS3MT', 'score': 9.7}, {'connected_gene': 'PTGES3P4', 'score': 9.69}, {'connected_gene': 'PFN1P11', 'score': 9.69}, {'connected_gene': 'ST13P13', 'score': 0.31}]
chr10	GH10I103245	103245935	103245994	0.5	[{'connected_gene': 'RPEL1', 'score': 550.77}, {'connected_gene': 'INA', 'score': 11.64}, {'connected_gene': 'RNU11-3P', 'score': 11.05}, {'connected_gene': 'CNNM2', 'score': 11.03}, {'connected_gene': 'CYP17A1', 'score': 10.09}, {'connected_gene': 'MIR1307', 'score': 9.88}, {'connected_gene': 'ATP5MD', 'score': 9.87}, {'connected_gene': 'PDCD11', 'score': 9.87}, {'connected_gene': 'AS3MT', 'score': 9.7}, {'connected_gene': 'PTGES3P4', 'score': 9.69}, {'connected_gene': 'PFN1P11', 'score': 9.69}]
chr10	GH10I103246	103246002	103246199	0.2	[{'connected_gene': 'RPEL1', 'score': 550.77}, {'connected_gene': 'INA', 'score': 11.64}, {'connected_gene': 'RNU11-3P', 'score': 11.05}, {'connected_gene': 'CNNM2', 'score': 11.03}, {'connected_gene': 'CYP17A1', 'score': 10.09}, {'connected_gene': 'MIR1307', 'score': 9.88}, {'connected_gene': 'ATP5MD', 'score': 9.87}, {'connected_gene': 'PDCD11', 'score': 9.87}, {'connected_gene': 'AS3MT', 'score': 9.7}, {'connected_gene': 'PTGES3P4', 'score': 9.69}, {'connected_gene': 'PFN1P11', 'score': 9.69}]
chr10	GH10I103207	103207282	103208224	0.38	[{'connected_gene': 'AS3MT', 'score': 13.88}, {'connected_gene': 'INA', 'score': 11.8}, {'connected_gene': 'RPEL1', 'score': 10.33}, {'connected_gene': 'ST13P13', 'score': 0.44}, {'connected_gene': 'NT5C2', 'score': 0.39}]
chr10	GH10I103038	103038526	103042618	0.97	[{'connected_gene': 'AS3MT', 'score': 33.82}, {'connected_gene': 'CNNM2', 'score': 11.44}, {'connected_gene': 'INA', 'score': 10.37}, {'connected_gene': 'RNU11-3P', 'score': 10.24}, {'connected_gene': 'ARL3', 'score': 9.53}, {'connected_gene': 'SFXN2', 'score': 9.53}, {'connected_gene': 'ENSG00000278498', 'score': 0.39}, {'connected_gene': 'PIR62550', 'score': 0.26}]
chr10	GH10I102962	102962933	102966720	0.93	[{'connected_gene': 'AS3MT', 'score': 35.85}, {'connected_gene': 'CNNM2', 'score': 11.11}, {'connected_gene': 'INA', 'score': 10.3}, {'connected_gene': 'RNU11-3P', 'score': 10.18}, {'connected_gene': 'BORCS7', 'score': 10.08}, {'connected_gene': 'MARCKSL1P1', 'score': 4.37}, {'connected_gene': 'GC10M102937', 'score': 0.31}, {'connected_gene': 'GC10P103015', 'score': 0.25}]
chr10	GH10I103069	103069601	103071076	0.98	[{'connected_gene': 'AS3MT', 'score': 35.82}, {'connected_gene': 'BORCS7', 'score': 12.4}, {'connected_gene': 'CNNM2', 'score': 12.04}, {'connected_gene': 'INA', 'score': 10.31}, {'connected_gene': 'RNU11-3P', 'score': 10.12}, {'connected_gene': 'ARL3', 'score': 9.79}, {'connected_gene': 'SFXN2', 'score': 9.79}, {'connected_gene': 'MARCKSL1P1', 'score': 8.29}, {'connected_gene': 'PIR62550', 'score': 0.39}, {'connected_gene': 'ENSG00000278498', 'score': 0.26}]
chr10	GH10I103009	103009672	103009954	0.26	[{'connected_gene': 'CNNM2', 'score': 10.78}, {'connected_gene': 'PTGES3P4', 'score': 10.68}, {'connected_gene': 'PFN1P11', 'score': 10.68}, {'connected_gene': 'CYP17A1', 'score': 10.68}, {'connected_gene': 'RNU11-3P', 'score': 9.86}, {'connected_gene': 'AS3MT', 'score': 8.46}, {'connected_gene': 'MARCKSL1P1', 'score': 7.89}, {'connected_gene': 'INA', 'score': 1.83}, {'connected_gene': 'GC10P103015', 'score': 0.77}, {'connected_gene': 'GC10M102937', 'score': 0.19}]
chr10	GH10I103215	103215332	103216985	0.49	[{'connected_gene': 'ST13P13', 'score': 550.77}, {'connected_gene': 'NT5C2', 'score': 12.72}, {'connected_gene': 'INA', 'score': 11.24}, {'connected_gene': 'RNU11-3P', 'score': 10.35}, {'connected_gene': 'AS3MT', 'score': 5.6}, {'connected_gene': 'RPEL1', 'score': 0.31}]
chr10	GH10I103272	103272584	103273719	0.99	[{'connected_gene': 'BORCS7', 'score': 8.23}, {'connected_gene': 'ARL3', 'score': 5.73}, {'connected_gene': 'CALHM2', 'score': 5.15}, {'connected_gene': 'INA', 'score': 0.77}, {'connected_gene': 'RPEL1', 'score': 0.31}]
chr10	GH10I103237	103237885	103242851	1.46	[{'connected_gene': 'BORCS7', 'score': 19.96}, {'connected_gene': 'NT5C2', 'score': 19.81}, {'connected_gene': 'AS3MT', 'score': 17.47}, {'connected_gene': 'INA', 'score': 11.03}, {'connected_gene': 'CNNM2', 'score': 10.86}, {'connected_gene': 'PFN1P11', 'score': 10.79}, {'connected_gene': 'PTGES3P4', 'score': 10.67}, {'connected_gene': 'CYP17A1', 'score': 10.67}, {'connected_gene': 'RNU11-3P', 'score': 10.52}, {'connected_gene': 'ARL3', 'score': 9.13}, {'connected_gene': 'SFXN2', 'score': 9.13}, {'connected_gene': 'CALHM2', 'score': 7.72}, {'connected_gene': 'RPEL1', 'score': 0.44}, {'connected_gene': 'ST13P13', 'score': 0.34}]
chr10	GH10I103691	103691402	103691832	1.29	[{'connected_gene': 'ENSG00000260461', 'score': 19.79}, {'connected_gene': 'PCGF6', 'score': 18.95}, {'connected_gene': 'SFR1', 'score': 12.58}, {'connected_gene': 'SLK', 'score': 12.14}, {'connected_gene': 'SH3PXD2A', 'score': 11.06}, {'connected_gene': 'NEURL1', 'score': 10.15}, {'connected_gene': 'NEURL1-AS1', 'score': 9.95}, {'connected_gene': 'INA', 'score': 1.62}, {'connected_gene': 'ENSG00000222503', 'score': 0.37}, {'connected_gene': 'GC10M103742', 'score': 0.23}]
chr10	GH10I103121	103121464	103121653	0.85	[{'connected_gene': 'PIR32358', 'score': 550.77}, {'connected_gene': 'AS3MT', 'score': 43.85}, {'connected_gene': 'INA', 'score': 10.51}, {'connected_gene': 'RNU11-3P', 'score': 9.74}, {'connected_gene': 'NEURL1', 'score': 9.08}, {'connected_gene': 'GC10M103094', 'score': 0.34}, {'connected_gene': 'NT5C2', 'score': 0.19}]
chr10	GH10I103284	103284284	103284433	0.69	[{'connected_gene': 'ENSG00000260461', 'score': 11.24}, {'connected_gene': 'CALHM2', 'score': 6.02}, {'connected_gene': 'INA', 'score': 0.44}, {'connected_gene': 'RNU11-3P', 'score': 0.31}, {'connected_gene': 'GC10M103313', 'score': 0.31}]