PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000451207	[[158297740, 158298047], [158298710, 158298804], [158299324, 158299438], [158299641, 158299920], [158300585, 158300815]]	[[158298025, 158298047], [158298710, 158298804], [158299324, 158299438], [158299641, 158299920], [158300585, 158300815]]
ENST00000368168	[[158297740, 158298047], [158298710, 158298804], [158299159, 158299438], [158299641, 158299920], [158300585, 158300852], [158301152, 158301321]]	[[158298025, 158298047], [158298710, 158298804], [158299159, 158299438], [158299641, 158299920], [158300585, 158300852], [158301152, 158301213]]
NM_001764	[[158297739, 158298047], [158298710, 158298804], [158299159, 158299438], [158299641, 158299920], [158300585, 158300852], [158301152, 158301321]]	[[158298025, 158298047], [158298710, 158298804], [158299159, 158299438], [158299641, 158299920], [158300585, 158300852], [158301152, 158301213]]

Promoter

Chrom	Start	End	Description
chr1	158300679	158300696	CAGE_peak_5_at_CD1B_5end
chr1	158300710	158300726	CAGE_peak_4_at_CD1B_5end
chr1	158300747	158300758	CAGE_peak_12_at_CD1B_5end
chr1	158300919	158300933	CAGE_peak_11_at_CD1B_5end
chr1	158300950	158300997	CAGE_peak_3_at_CD1B_5end
chr1	158301000	158301009	CAGE_peak_14_at_CD1B_5end
chr1	158301019	158301040	CAGE_peak_7_at_CD1B_5end
chr1	158301070	158301081	CAGE_peak_10_at_CD1B_5end
chr1	158301177	158301192	CAGE_peak_9_at_CD1B_5end
chr1	158301222	158301245	CAGE_peak_2_at_CD1B_5end
chr1	158301249	158301260	CAGE_peak_8_at_CD1B_5end
chr1	158301312	158301328	CAGE_peak_1_at_CD1B_5end
chr1	158301588	158301605	CAGE_peak_17_at_CD1B_5end
chr1	158301686	158301700	CAGE_peak_6_at_CD1B_5end
chr1	158301703	158301708	CAGE_peak_19_at_CD1B_5end
chr1	158301723	158301737	CAGE_peak_13_at_CD1B_5end
chr1	158301762	158301767	CAGE_peak_16_at_CD1B_5end
chr1	158301806	158301818	CAGE_peak_15_at_CD1B_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I158247	158247601	158249800	1.3	[{'connected_gene': 'CD1A', 'score': 550.77}, {'connected_gene': 'CD1C', 'score': 14.02}, {'connected_gene': 'CD1E', 'score': 5.94}, {'connected_gene': 'CD1D', 'score': 4.5}, {'connected_gene': 'CD1B', 'score': 3.81}, {'connected_gene': 'OR10T2', 'score': 2.31}, {'connected_gene': 'GC01P158261', 'score': 0.44}, {'connected_gene': 'GC01P158260', 'score': 0.44}]
chr1	GH01I158327	158327609	158327734	0.42	[{'connected_gene': 'CD1E', 'score': 7.92}, {'connected_gene': 'CD1B', 'score': 7.4}, {'connected_gene': 'CD1C', 'score': 4.31}, {'connected_gene': 'GC01P158293', 'score': 0.29}, {'connected_gene': 'GC01P158292', 'score': 0.29}]
chr1	GH01I158333	158333888	158334071	0.46	[{'connected_gene': 'CD1E', 'score': 22.01}, {'connected_gene': 'CD1B', 'score': 8.18}, {'connected_gene': 'OR6Y1', 'score': 3.55}, {'connected_gene': 'OR10K2', 'score': 2.75}, {'connected_gene': 'OR6K6', 'score': 2.44}, {'connected_gene': 'OR10T2', 'score': 2.22}, {'connected_gene': 'CD1C', 'score': 1.67}]
chr1	GH01I158324	158324401	158325000	0.94	[{'connected_gene': 'CD1C', 'score': 10.57}, {'connected_gene': 'CD1A', 'score': 10.41}, {'connected_gene': 'CD1B', 'score': 0.44}, {'connected_gene': 'GC01P158293', 'score': 0.29}, {'connected_gene': 'GC01P158292', 'score': 0.29}]
chr1	GH01I158334	158334252	158335389	0.31	[{'connected_gene': 'CD1C', 'score': 10.23}, {'connected_gene': 'CD1B', 'score': 0.77}, {'connected_gene': 'CD1E', 'score': 0.37}]
chr1	GH01I158335	158333401	158333600	0.51	[{'connected_gene': 'CD1B', 'score': 550.77}, {'connected_gene': 'CD1E', 'score': 0.37}]
chr1	GH01I158331	158331521	158331580	0.7	[{'connected_gene': 'CD1B', 'score': 550.77}, {'connected_gene': 'CD1E', 'score': 0.34}]
chr1	GH01I158361	158361950	158366193	0.31	[{'connected_gene': 'CD1B', 'score': 11.17}, {'connected_gene': 'OR10T2', 'score': 11.05}, {'connected_gene': 'CD1C', 'score': 10.47}, {'connected_gene': 'OR10K2', 'score': 10.21}, {'connected_gene': 'OR10X1', 'score': 9.48}, {'connected_gene': 'CD1E', 'score': 5.13}]
chr1	GH01I158444	158444332	158448533	0.2	[{'connected_gene': 'OR10T1P', 'score': 550.77}, {'connected_gene': 'OR10R2', 'score': 11.68}, {'connected_gene': 'OR10K2', 'score': 10.58}, {'connected_gene': 'OR6N2', 'score': 9.29}, {'connected_gene': 'CD1B', 'score': 7.44}, {'connected_gene': 'EI24P2', 'score': 0.44}]
chr1	GH01I158358	158358359	158360954	0.2	[{'connected_gene': 'SPTA1', 'score': 13.68}, {'connected_gene': 'OR10T2', 'score': 11.05}, {'connected_gene': 'CD1B', 'score': 10.67}, {'connected_gene': 'CD1C', 'score': 10.36}, {'connected_gene': 'OR10R2', 'score': 10.06}, {'connected_gene': 'CD1E', 'score': 0.44}]
chr1	GH01I158425	158425793	158426670	0.2	[{'connected_gene': 'OR10K2', 'score': 550.77}, {'connected_gene': 'CD1E', 'score': 10.68}, {'connected_gene': 'OR10T2', 'score': 10.59}, {'connected_gene': 'CD1B', 'score': 7.35}]
chr1	GH01I158424	158424070	158424630	0.2	[{'connected_gene': 'OR10K2', 'score': 550.77}, {'connected_gene': 'CD1B', 'score': 6.49}, {'connected_gene': 'OR10T2', 'score': 0.34}]
chr1	GH01I158426	158424642	158425761	0.2	[{'connected_gene': 'OR10K2', 'score': 550.77}, {'connected_gene': 'CD1B', 'score': 6.45}, {'connected_gene': 'OR10T2', 'score': 0.31}]
chr1	GH01I158420	158420213	158421340	0.2	[{'connected_gene': 'OR10R2', 'score': 10.05}, {'connected_gene': 'OR10T2', 'score': 9.76}, {'connected_gene': 'CD1B', 'score': 6.47}, {'connected_gene': 'OR10K2', 'score': 0.44}]
chr1	GH01I158400	158400866	158401183	0.47	[{'connected_gene': 'OR10T2', 'score': 552.49}, {'connected_gene': 'CD1E', 'score': 15.76}, {'connected_gene': 'CD1B', 'score': 4.43}, {'connected_gene': 'OR10K1', 'score': 1.67}, {'connected_gene': 'OR6K3', 'score': 1.49}, {'connected_gene': 'OR6N1', 'score': 1.47}, {'connected_gene': 'OR10K2', 'score': 0.31}]
chr1	GH01I158434	158434313	158437493	0.31	[{'connected_gene': 'OR10T2', 'score': 10.9}, {'connected_gene': 'OR10R2', 'score': 10.69}, {'connected_gene': 'OR6K2', 'score': 9.37}, {'connected_gene': 'OR10X1', 'score': 9.32}, {'connected_gene': 'CD1B', 'score': 7.14}, {'connected_gene': 'OR10K2', 'score': 0.44}, {'connected_gene': 'OR10T1P', 'score': 0.39}]
chr1	GH01I158493	158493046	158493397	0.26	[{'connected_gene': 'ENSG00000236656', 'score': 550.77}, {'connected_gene': 'CD1E', 'score': 15.21}, {'connected_gene': 'SPTA1', 'score': 7.05}, {'connected_gene': 'OR6N1', 'score': 5.51}, {'connected_gene': 'CD1B', 'score': 4.28}, {'connected_gene': 'OR10T2', 'score': 2.63}, {'connected_gene': 'OR10R3P', 'score': 0.77}]
chr1	GH01I158208	158208239	158209907	0.2	[{'connected_gene': 'ENSG00000176320', 'score': 15.86}, {'connected_gene': 'CD1D', 'score': 15.84}, {'connected_gene': 'ELL2P1', 'score': 10.81}, {'connected_gene': 'CD1B', 'score': 10.17}, {'connected_gene': 'GC01P158217', 'score': 0.44}]
chr1	GH01I158283	158283201	158293035	2.02	[{'connected_gene': 'GC01P158286', 'score': 550.77}, {'connected_gene': 'CD1C', 'score': 550.77}, {'connected_gene': 'CD1B', 'score': 10.07}, {'connected_gene': 'CD1E', 'score': 5.25}, {'connected_gene': 'GC01P158293', 'score': 0.77}, {'connected_gene': 'GC01P158292', 'score': 0.77}]