PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000515499	[[180649498, 180649781], [180657743, 180657839], [180659658, 180659889], [180660412, 180660435], [180660635, 180660763], [180661173, 180661326]]	[[180657800, 180657839], [180659658, 180659889], [180660412, 180660435], [180660635, 180660763], [180661173, 180661326]]
ENST00000508930	[[180650289, 180651812], [180657743, 180657839], [180659658, 180659889], [180660412, 180660763], [180661173, 180662806]]	None
ENST00000351937	[[180650289, 180651812], [180657743, 180657839], [180659658, 180659889], [180660412, 180660435], [180660635, 180660763], [180661173, 180661349], [180661931, 180661995], [180662353, 180662808]]	[[180650999, 180651812], [180657743, 180657839], [180659658, 180659889], [180660412, 180660435], [180660635, 180660763], [180661173, 180661349], [180661931, 180661995], [180662353, 180662379]]
ENST00000315073	[[180650289, 180651812], [180657743, 180657839], [180659658, 180659889], [180660412, 180660435], [180660635, 180660763], [180661173, 180662809]]	[[180650999, 180651812], [180657743, 180657839], [180659658, 180659889], [180660412, 180660435], [180660635, 180660763], [180661173, 180661775]]
ENST00000503114	[[180651057, 180651812], [180657743, 180657839], [180659658, 180659889], [180660635, 180660763], [180661173, 180661349], [180661931, 180661995], [180662353, 180662807]]	[[180651057, 180651812], [180657743, 180657839], [180659658, 180659889], [180660635, 180660641]]
ENST00000515223	[[180651165, 180651812], [180657743, 180662803]]	None
ENST00000515834	[[180651690, 180657839], [180659658, 180660524]]	None
ENST00000514219	[[180660408, 180660435], [180660635, 180660763], [180661173, 180661349], [180661995, 180662079], [180662353, 180662397]]	[[180660408, 180660435], [180660635, 180660763], [180661173, 180661349], [180661995, 180662013]]
ENST00000510072	[[180660705, 180660763], [180661124, 180661818]]	None
NR_045218	[[180650262, 180651812], [180657743, 180657839], [180659658, 180659889], [180660635, 180660763], [180661173, 180661349], [180661931, 180661995], [180662353, 180662808]]	None
NM_201627	[[180650262, 180651812], [180657743, 180657839], [180659658, 180659889], [180660412, 180660435], [180660635, 180660763], [180661173, 180661349], [180661931, 180661995], [180662353, 180662808]]	[[180650999, 180651812], [180657743, 180657839], [180659658, 180659889], [180660412, 180660435], [180660635, 180660763], [180661173, 180661349], [180661931, 180661995], [180662353, 180662379]]
NM_033549	[[180650262, 180651812], [180657743, 180657839], [180659658, 180659889], [180660412, 180660435], [180660635, 180660763], [180661173, 180662808]]	[[180650999, 180651812], [180657743, 180657839], [180659658, 180659889], [180660412, 180660435], [180660635, 180660763], [180661173, 180661775]]

Promoter

Chrom	Start	End	Description
chr5	180650260	180650269	CAGE_peak_6_at_TRIM41_5end
chr5	180650271	180650319	CAGE_peak_1_at_TRIM41_5end
chr5	180650695	180650727	CAGE_peak_2_at_TRIM41_5end
chr5	180650729	180650755	CAGE_peak_3_at_TRIM41_5end
chr5	180650953	180651007	CAGE_peak_4_at_TRIM41_5end
chr5	180651564	180651580	CAGE_peak_13_at_TRIM41_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr5	GH05I181187	181187000	181193459	2.15	[{'connected_gene': 'LOC105377769', 'score': 550.77}, {'connected_gene': 'TRT-TGT6-1', 'score': 550.77}, {'connected_gene': 'PIR54518', 'score': 550.77}, {'connected_gene': 'TRV-AAC2-1', 'score': 550.77}, {'connected_gene': 'TRP-TGG3-1', 'score': 550.77}, {'connected_gene': 'LINC01962', 'score': 550.77}, {'connected_gene': 'GC05M181234', 'score': 550.77}, {'connected_gene': 'GC05M181233', 'score': 550.77}, {'connected_gene': 'TRIM52', 'score': 41.74}, {'connected_gene': 'ENSG00000233937', 'score': 32.7}, {'connected_gene': 'ZFP62', 'score': 25.92}, {'connected_gene': 'ENSG00000248514', 'score': 23.75}, {'connected_gene': 'CNOT6', 'score': 22.08}, {'connected_gene': 'TRIM7', 'score': 20.26}, {'connected_gene': 'GFPT2', 'score': 11.38}, {'connected_gene': 'RASGEF1C', 'score': 11.26}, {'connected_gene': 'ENSG00000248367', 'score': 10.59}, {'connected_gene': 'SNORD96A', 'score': 10.3}, {'connected_gene': 'TRIM52-AS1', 'score': 4.21}, {'connected_gene': 'TRIM41', 'score': 2.21}, {'connected_gene': 'TRL-AAG2-1', 'score': 0.77}, {'connected_gene': 'PIR48234', 'score': 0.77}]
chr5	GH05I181230	181230529	181231327	0.38	[{'connected_gene': 'ENSG00000247049', 'score': 550.77}, {'connected_gene': 'TRIM41', 'score': 0.44}, {'connected_gene': 'GC05M181242', 'score': 0.39}]
chr5	GH05I181179	181179223	181180434	0.52	[{'connected_gene': 'GC05P181179', 'score': 550.77}, {'connected_gene': 'TRIM7', 'score': 17.13}, {'connected_gene': 'TRIM41', 'score': 11.87}, {'connected_gene': 'ENSG00000247049', 'score': 11.84}, {'connected_gene': 'ENSG00000248514', 'score': 11.77}, {'connected_gene': 'RACK1', 'score': 11.63}, {'connected_gene': 'ENSG00000233937', 'score': 11.63}, {'connected_gene': 'MGAT1', 'score': 10.03}, {'connected_gene': 'ENSG00000248103', 'score': 5.91}, {'connected_gene': 'TRL-AAG2-1', 'score': 0.44}]
chr5	GH05I181184	181182021	181182250	0.84	[{'connected_gene': 'ENSG00000248514', 'score': 17.92}, {'connected_gene': 'TRIM7', 'score': 12.1}, {'connected_gene': 'TRIM41', 'score': 11.87}, {'connected_gene': 'ENSG00000247049', 'score': 11.86}, {'connected_gene': 'GC05P181179', 'score': 0.77}, {'connected_gene': 'TRL-AAG2-1', 'score': 0.44}]
chr5	GH05I181182	181182461	181182731	0.46	[{'connected_gene': 'ENSG00000248514', 'score': 21.37}, {'connected_gene': 'TRIM7', 'score': 12.1}, {'connected_gene': 'TRIM41', 'score': 11.89}, {'connected_gene': 'ENSG00000247049', 'score': 11.86}, {'connected_gene': 'GC05P181179', 'score': 0.77}, {'connected_gene': 'TRL-AAG2-1', 'score': 0.44}]
chr5	GH05I181221	181221077	181225426	2.36	[{'connected_gene': 'PIR33457', 'score': 550.77}, {'connected_gene': 'MIR4638', 'score': 550.77}, {'connected_gene': 'TRK-CTT2-3', 'score': 550.77}, {'connected_gene': 'PIR62653', 'score': 550.77}, {'connected_gene': 'TRV-CAC1-5', 'score': 550.77}, {'connected_gene': 'TRIM41', 'score': 550.77}, {'connected_gene': 'ENSG00000233937', 'score': 74.78}, {'connected_gene': 'RACK1', 'score': 46.34}, {'connected_gene': 'TRIM52', 'score': 41.75}, {'connected_gene': 'TRIM52-AS1', 'score': 36.83}, {'connected_gene': 'CNOT6', 'score': 22.09}, {'connected_gene': 'ENSG00000248367', 'score': 20.99}, {'connected_gene': 'GFPT2', 'score': 20.88}, {'connected_gene': 'MGAT1', 'score': 18.24}, {'connected_gene': 'ZFP62', 'score': 15.18}, {'connected_gene': 'MAPK9', 'score': 11.61}, {'connected_gene': 'SNORD96A', 'score': 10.43}, {'connected_gene': 'ENSG00000248103', 'score': 10.31}, {'connected_gene': 'TRIM7', 'score': 7.39}, {'connected_gene': 'ENSG00000247049', 'score': 0.44}]
chr5	GH05I181229	181229596	181230411	0.31	[{'connected_gene': 'ENSG00000247049', 'score': 550.77}, {'connected_gene': 'TRIM52-AS1', 'score': 37.37}, {'connected_gene': 'RACK1', 'score': 9.23}, {'connected_gene': 'PIR33457', 'score': 0.44}, {'connected_gene': 'TRIM41', 'score': 0.44}]
chr5	GH05I181280	181280320	181282476	1.13	[{'connected_gene': 'ENSG00000248103', 'score': 550.77}, {'connected_gene': 'TRIM52-AS1', 'score': 91.21}, {'connected_gene': 'RACK1', 'score': 23.54}, {'connected_gene': 'TRIM52', 'score': 12.55}, {'connected_gene': 'ENSG00000233937', 'score': 11.29}, {'connected_gene': 'ENSG00000247049', 'score': 10.95}, {'connected_gene': 'TRIM41', 'score': 10.94}, {'connected_gene': 'TRIM7', 'score': 10.7}, {'connected_gene': 'ENSG00000250900', 'score': 10.62}, {'connected_gene': 'ENSG00000274525', 'score': 0.39}]