PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000376873	[[96085857, 96086301], [96212385, 96212547], [96212635, 96212717], [96229484, 96229592], [96230153, 96232013]]	[[96086087, 96086301], [96212385, 96212547], [96212635, 96212717], [96229484, 96229592], [96230153, 96230268]]
ENST00000299339	[[96204978, 96205227], [96212385, 96212547], [96212635, 96212717], [96229484, 96229592], [96230153, 96230501]]	[[96205007, 96205227], [96212385, 96212547], [96212635, 96212717], [96229484, 96229592], [96230153, 96230268]]
ENST00000376855	[[96212403, 96212547], [96212635, 96213192]]	[[96212411, 96212547], [96212635, 96212721]]
NM_001160100	[[96085852, 96086244], [96212385, 96212547], [96212635, 96212717], [96229484, 96229592], [96230153, 96232010]]	[[96086087, 96086244], [96212385, 96212547], [96212635, 96212717], [96229484, 96229592], [96230153, 96230268]]
NM_182848	[[96085852, 96086301], [96212385, 96212547], [96212635, 96212717], [96229484, 96229592], [96230153, 96232010]]	[[96086087, 96086301], [96212385, 96212547], [96212635, 96212717], [96229484, 96229592], [96230153, 96230268]]
NM_006984	[[96204946, 96205227], [96212385, 96212547], [96212635, 96212717], [96229484, 96229592], [96230153, 96232010]]	[[96205007, 96205227], [96212385, 96212547], [96212635, 96212717], [96229484, 96229592], [96230153, 96230268]]

Promoter

Chrom	Start	End	Description
chr13	96085847	96085864	CAGE_peak_4_at_CLDN10_5end
chr13	96085879	96085890	CAGE_peak_7_at_CLDN10_5end
chr13	96085999	96086013	CAGE_peak_5_at_CLDN10_5end
chr13	96086031	96086040	CAGE_peak_11_at_CLDN10_5end
chr13	96086045	96086052	CAGE_peak_12_at_CLDN10_5end
chr13	96086056	96086073	CAGE_peak_3_at_CLDN10_5end
chr13	96204672	96204681	CAGE_peak_10_at_CLDN10_5end
chr13	96204942	96204953	CAGE_peak_2_at_CLDN10_5end
chr13	96204961	96205001	CAGE_peak_1_at_CLDN10_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr13	GH13I095551	95551998	95553822	1.26	[{'connected_gene': 'CLDN10', 'score': 550.13}, {'connected_gene': 'TGDS', 'score': 9.91}, {'connected_gene': 'DNAJC3', 'score': 6.15}, {'connected_gene': 'DNAJC3-AS1', 'score': 5.48}, {'connected_gene': 'GC13P095540', 'score': 0.39}, {'connected_gene': 'GC13M095580', 'score': 0.31}]
chr13	GH13I095433	95433550	95433609	0.5	[{'connected_gene': 'CLDN10', 'score': 550.77}, {'connected_gene': 'LOC105370321', 'score': 0.31}]
chr13	GH13I095485	95485000	95485601	0.98	[{'connected_gene': 'CLDN10', 'score': 11.14}, {'connected_gene': 'ABCC4', 'score': 10.17}, {'connected_gene': 'CLDN10-AS1', 'score': 0.25}]
chr13	GH13I095479	95479619	95480807	0.82	[{'connected_gene': 'CLDN10', 'score': 9.44}, {'connected_gene': 'CLDN10-AS1', 'score': 0.23}]
chr13	GH13I095456	95456571	95458165	0.66	[{'connected_gene': 'CLDN10', 'score': 0.34}, {'connected_gene': 'CLDN10-AS1', 'score': 0.18}]
chr13	GH13I095481	95481107	95481256	0.31	[{'connected_gene': 'CLDN10', 'score': 0.25}, {'connected_gene': 'CLDN10-AS1', 'score': 0.23}]
chr13	GH13I095656	95656121	95657522	0.62	[{'connected_gene': 'DNAJC3', 'score': 20.89}, {'connected_gene': 'DNAJC3-AS1', 'score': 12.08}, {'connected_gene': 'CLDN10', 'score': 9.79}, {'connected_gene': 'DZIP1', 'score': 0.39}]
chr13	GH13I095564	95564401	95565600	0.77	[{'connected_gene': 'DZIP1', 'score': 5.61}, {'connected_gene': 'CLDN10', 'score': 4.73}, {'connected_gene': 'DNAJC3', 'score': 4.62}, {'connected_gene': 'GC13M095580', 'score': 0.39}, {'connected_gene': 'GC13P095540', 'score': 0.34}]
chr13	GH13I095642	95642957	95645253	1.84	[{'connected_gene': 'DZIP1', 'score': 562.24}, {'connected_gene': 'UGGT2', 'score': 11.38}, {'connected_gene': 'DNAJC3-AS1', 'score': 10.69}, {'connected_gene': 'CLDN10', 'score': 4.31}, {'connected_gene': 'GC13M095581', 'score': 0.22}]
chr13	GH13I095403	95403458	95405016	0.96	[{'connected_gene': 'LOC105370321', 'score': 550.77}, {'connected_gene': 'CLDN10', 'score': 11.24}, {'connected_gene': 'ABCC4', 'score': 10.92}]
chr13	GH13I095478	95478147	95479400	0.95	[{'connected_gene': 'ABCC4', 'score': 10.33}, {'connected_gene': 'CLDN10', 'score': 5.25}, {'connected_gene': 'CLDN10-AS1', 'score': 0.22}]
chr13	GH13I095524	95524407	95524556	0.57	[{'connected_gene': 'CLDN10-AS1', 'score': 30.72}, {'connected_gene': 'CLDN10', 'score': 0.16}]
chr13	GH13I095530	95530247	95530496	0.69	[{'connected_gene': 'CLDN10-AS1', 'score': 0.77}, {'connected_gene': 'CLDN10', 'score': 0.15}]
chr13	GH13I095509	95509343	95510370	0.66	[{'connected_gene': 'CLDN10-AS1', 'score': 12.64}, {'connected_gene': 'CLDN10', 'score': 0.18}]
chr13	GH13I095554	95554001	95554400	0.49	[{'connected_gene': 'CLDN10-AS1', 'score': 5.76}, {'connected_gene': 'UGGT2', 'score': 4.57}, {'connected_gene': 'GC13P095540', 'score': 0.39}, {'connected_gene': 'GC13M095580', 'score': 0.34}, {'connected_gene': 'CLDN10', 'score': 0.13}]
chr13	GH13I095534	95534018	95536016	0.97	[{'connected_gene': 'CLDN10-AS1', 'score': 559.08}, {'connected_gene': 'TGDS', 'score': 23.46}, {'connected_gene': 'ABCC4', 'score': 10.32}, {'connected_gene': 'CLDN10', 'score': 10.09}, {'connected_gene': 'GC13P095540', 'score': 0.44}]
chr13	GH13I095540	95540511	95541639	0.31	[{'connected_gene': 'GC13P095540', 'score': 550.77}, {'connected_gene': 'DZIP1', 'score': 10.84}, {'connected_gene': 'CLDN10', 'score': 9.26}, {'connected_gene': 'UGGT2', 'score': 6.13}, {'connected_gene': 'DNAJC3', 'score': 4.65}, {'connected_gene': 'GC13M095580', 'score': 0.28}]