PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000268138	[[90118712, 90119471], [90125916, 90126196], [90127516, 90127758], [90128938, 90129173], [90135277, 90135407], [90137645, 90137785], [90138623, 90138842], [90142554, 90142706], [90143815, 90143916], [90144528, 90144622], [90144719, 90144799], [90144967, 90145207], [90146026, 90146123], [90149998, 90150056], [90152033, 90152180], [90159635, 90159726], [90161382, 90161441], [90162938, 90163073], [90164623, 90164781], [90166853, 90169017], [90169166, 90169292], [90170186, 90171250]]	[[90118817, 90119471], [90125916, 90126196], [90127516, 90127758], [90128938, 90129173], [90135277, 90135407], [90137645, 90137785], [90138623, 90138842], [90142554, 90142706], [90143815, 90143916], [90144528, 90144622], [90144719, 90144799], [90144967, 90145207], [90146026, 90146123], [90149998, 90150056], [90152033, 90152180], [90159635, 90159726], [90161382, 90161441], [90162938, 90163073], [90164623, 90164781], [90166853, 90169017], [90169166, 90169292], [90170186, 90170317]]
ENST00000560985	[[90118817, 90119471], [90125916, 90126196], [90127519, 90127758], [90128938, 90129173], [90135277, 90135407], [90137645, 90137785], [90138623, 90138842], [90142554, 90142706], [90143815, 90143916], [90144528, 90144622], [90144719, 90144799], [90144967, 90145207], [90146026, 90146123], [90149998, 90150056], [90152033, 90152180], [90159635, 90159726], [90161382, 90161441], [90162938, 90163073], [90164623, 90164781], [90166853, 90169017], [90169166, 90169292], [90170186, 90171243]]	[[90118817, 90119471], [90125916, 90126196], [90127519, 90127758], [90128938, 90129173], [90135277, 90135407], [90137645, 90137785], [90138623, 90138842], [90142554, 90142706], [90143815, 90143916], [90144528, 90144622], [90144719, 90144799], [90144967, 90145207], [90146026, 90146123], [90149998, 90150056], [90152033, 90152180], [90159635, 90159726], [90161382, 90161441], [90162938, 90163073], [90164623, 90164781], [90166853, 90169017], [90169166, 90169292], [90170186, 90170317]]
ENST00000561095	[[90168630, 90169017], [90169166, 90169292], [90170186, 90170413], [90172660, 90174287]]	[[90168630, 90169017], [90169166, 90169292], [90170186, 90170317]]
NM_001308025	[[90118817, 90119471], [90125916, 90126196], [90127519, 90127758], [90128938, 90129173], [90135277, 90135407], [90137645, 90137785], [90138623, 90138842], [90142554, 90142706], [90143815, 90143916], [90144528, 90144622], [90144719, 90144799], [90144967, 90145207], [90146026, 90146123], [90149998, 90150056], [90152033, 90152180], [90159635, 90159726], [90161382, 90161441], [90162938, 90163073], [90164623, 90164781], [90166853, 90169017], [90169166, 90169292], [90170186, 90171254]]	[[90118817, 90119471], [90125916, 90126196], [90127519, 90127758], [90128938, 90129173], [90135277, 90135407], [90137645, 90137785], [90138623, 90138842], [90142554, 90142706], [90143815, 90143916], [90144528, 90144622], [90144719, 90144799], [90144967, 90145207], [90146026, 90146123], [90149998, 90150056], [90152033, 90152180], [90159635, 90159726], [90161382, 90161441], [90162938, 90163073], [90164623, 90164781], [90166853, 90169017], [90169166, 90169292], [90170186, 90170317]]
NM_152259	[[90118817, 90119471], [90125916, 90126196], [90127516, 90127758], [90128938, 90129173], [90135277, 90135407], [90137645, 90137785], [90138623, 90138842], [90142554, 90142706], [90143815, 90143916], [90144528, 90144622], [90144719, 90144799], [90144967, 90145207], [90146026, 90146123], [90149998, 90150056], [90152033, 90152180], [90159635, 90159726], [90161382, 90161441], [90162938, 90163073], [90164623, 90164781], [90166853, 90169017], [90169166, 90169292], [90170186, 90171254]]	[[90118817, 90119471], [90125916, 90126196], [90127516, 90127758], [90128938, 90129173], [90135277, 90135407], [90137645, 90137785], [90138623, 90138842], [90142554, 90142706], [90143815, 90143916], [90144528, 90144622], [90144719, 90144799], [90144967, 90145207], [90146026, 90146123], [90149998, 90150056], [90152033, 90152180], [90159635, 90159726], [90161382, 90161441], [90162938, 90163073], [90164623, 90164781], [90166853, 90169017], [90169166, 90169292], [90170186, 90170317]]

Promoter

Chrom	Start	End	Description
chr15	90118685	90118717	CAGE_peak_2_at_C15orf42_5end
chr15	90118723	90118753	CAGE_peak_1_at_C15orf42_5end
chr15	90167781	90167785	CAGE_peak_6_at_C15orf42_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr15	GH15I089548	89548126	89549218	0.2	[{'connected_gene': 'TICRR', 'score': 10.34}, {'connected_gene': 'PEX11A', 'score': 5.67}, {'connected_gene': 'LINC00928', 'score': 0.34}, {'connected_gene': 'ENSG00000259713', 'score': 0.29}]
chr15	GH15I089574	89574601	89578263	2.03	[{'connected_gene': 'TICRR', 'score': 561.71}, {'connected_gene': 'POLG', 'score': 42.28}, {'connected_gene': 'LOC100631255', 'score': 27.43}, {'connected_gene': 'FANCI', 'score': 10.42}, {'connected_gene': 'KIF7', 'score': 5.72}, {'connected_gene': 'GC15M089580', 'score': 0.77}, {'connected_gene': 'ENSG00000259713', 'score': 0.22}]
chr15	GH15I089556	89556770	89556919	0.83	[{'connected_gene': 'TICRR', 'score': 8.23}, {'connected_gene': 'LINC00928', 'score': 0.29}, {'connected_gene': 'ENSG00000259713', 'score': 0.28}]
chr15	GH15I089664	89664802	89666856	0.89	[{'connected_gene': 'PEX11A', 'score': 11.81}, {'connected_gene': 'WDR93', 'score': 11.81}, {'connected_gene': 'RPL36AP43', 'score': 11.81}, {'connected_gene': 'MESP1', 'score': 10.3}, {'connected_gene': 'TICRR', 'score': 7.98}, {'connected_gene': 'KIF7', 'score': 0.77}, {'connected_gene': 'PLIN1', 'score': 0.39}]
chr15	GH15I089689	89689801	89691400	1.98	[{'connected_gene': 'WDR93', 'score': 566.63}, {'connected_gene': 'PEX11A', 'score': 558.31}, {'connected_gene': 'TICRR', 'score': 6.48}]
chr15	GH15I089646	89646611	89649544	1.06	[{'connected_gene': 'FANCI', 'score': 12.25}, {'connected_gene': 'HMGB1P8', 'score': 11.05}, {'connected_gene': 'ENSG00000259314', 'score': 10.75}, {'connected_gene': 'ENSG00000259212', 'score': 9.73}, {'connected_gene': 'TICRR', 'score': 7.51}, {'connected_gene': 'KIF7', 'score': 5.76}, {'connected_gene': 'ENSG00000259615', 'score': 0.2}]
chr15	GH15I089551	89551692	89551868	0.84	[{'connected_gene': 'RHCG', 'score': 3.85}, {'connected_gene': 'TICRR', 'score': 0.34}, {'connected_gene': 'LINC00928', 'score': 0.31}, {'connected_gene': 'ENSG00000259713', 'score': 0.29}]
chr15	GH15I089529	89529974	89532647	0.31	[{'connected_gene': 'RHCG', 'score': 13.31}, {'connected_gene': 'PLIN1', 'score': 10.21}, {'connected_gene': 'FANCI', 'score': 5.21}, {'connected_gene': 'GDPGP1', 'score': 4.55}, {'connected_gene': 'LINC00928', 'score': 0.44}, {'connected_gene': 'ENSG00000259713', 'score': 0.39}, {'connected_gene': 'TICRR', 'score': 0.26}]
chr15	GH15I089526	89526832	89527703	0.31	[{'connected_gene': 'RHCG', 'score': 13.31}, {'connected_gene': 'LINC00928', 'score': 0.77}, {'connected_gene': 'ENSG00000259713', 'score': 0.44}, {'connected_gene': 'TICRR', 'score': 0.25}]
chr15	GH15I089997	89997925	90006282	2.69	[{'connected_gene': 'ZNF710', 'score': 557.94}, {'connected_gene': 'FANCI', 'score': 22.96}, {'connected_gene': 'NIFKP5', 'score': 13.96}, {'connected_gene': 'ENSG00000259212', 'score': 13.26}, {'connected_gene': 'ENSG00000259314', 'score': 13.0}, {'connected_gene': 'UNC45A', 'score': 12.97}, {'connected_gene': 'POLG', 'score': 12.8}, {'connected_gene': 'ENSG00000228998', 'score': 10.99}, {'connected_gene': 'PRC1', 'score': 10.73}, {'connected_gene': 'TICRR', 'score': 10.09}, {'connected_gene': 'IQGAP1', 'score': 7.4}, {'connected_gene': 'ARPIN', 'score': 5.36}, {'connected_gene': 'ANPEP', 'score': 1.24}, {'connected_gene': 'MIR3174', 'score': 0.77}]
chr15	GH15I089565	89565041	89567619	0.56	[{'connected_gene': 'KIF7', 'score': 16.65}, {'connected_gene': 'TICRR', 'score': 10.63}, {'connected_gene': 'PLIN1', 'score': 9.85}, {'connected_gene': 'LINC00928', 'score': 0.26}, {'connected_gene': 'ENSG00000259713', 'score': 0.25}]
chr15	GH15I089654	89654328	89656442	2.12	[{'connected_gene': 'KIF7', 'score': 551.92}, {'connected_gene': 'TICRR', 'score': 7.75}, {'connected_gene': 'MIR9-3HG', 'score': 4.47}, {'connected_gene': 'ENSG00000259615', 'score': 0.19}]
chr15	GH15I089662	89662307	89664199	0.66	[{'connected_gene': 'KIF7', 'score': 550.77}, {'connected_gene': 'PEX11A', 'score': 11.79}, {'connected_gene': 'WDR93', 'score': 11.79}, {'connected_gene': 'RPL36AP43', 'score': 11.79}, {'connected_gene': 'MESP1', 'score': 10.3}, {'connected_gene': 'TICRR', 'score': 4.79}, {'connected_gene': 'ENSG00000228998', 'score': 4.61}, {'connected_gene': 'PLIN1', 'score': 0.37}]
chr15	GH15I089541	89541354	89544177	0.38	[{'connected_gene': 'KIF7', 'score': 5.5}, {'connected_gene': 'FANCI', 'score': 4.76}, {'connected_gene': 'LINC00928', 'score': 0.37}, {'connected_gene': 'ENSG00000259713', 'score': 0.34}, {'connected_gene': 'TICRR', 'score': 0.29}]
chr15	GH15I089545	89545884	89546419	0.43	[{'connected_gene': 'LINC00928', 'score': 0.34}, {'connected_gene': 'TICRR', 'score': 0.31}, {'connected_gene': 'ENSG00000259713', 'score': 0.31}]
chr15	GH15I089539	89539868	89541045	0.31	[{'connected_gene': 'LINC00928', 'score': 0.37}, {'connected_gene': 'ENSG00000259713', 'score': 0.34}, {'connected_gene': 'TICRR', 'score': 0.29}]
chr15	GH15I089532	89532756	89533242	0.2	[{'connected_gene': 'LINC00928', 'score': 0.44}, {'connected_gene': 'ENSG00000259713', 'score': 0.39}, {'connected_gene': 'TICRR', 'score': 0.26}]
chr15	GH15I089086	89086690	89095682	2.57	[{'connected_gene': 'ABHD2', 'score': 561.49}, {'connected_gene': 'LOC102724566', 'score': 13.74}, {'connected_gene': 'POLG', 'score': 13.05}, {'connected_gene': 'RNU7-195P', 'score': 12.81}, {'connected_gene': 'ENSG00000261407', 'score': 11.51}, {'connected_gene': 'LOC100631255', 'score': 10.74}, {'connected_gene': 'FANCI', 'score': 10.46}, {'connected_gene': 'TICRR', 'score': 9.8}, {'connected_gene': 'HAPLN3', 'score': 1.84}, {'connected_gene': 'ISG20', 'score': 1.66}, {'connected_gene': 'GC15M089095', 'score': 0.39}]
chr15	GH15I090229	90229264	90235346	2.27	[{'connected_gene': 'CIB1', 'score': 586.42}, {'connected_gene': 'PIR48569', 'score': 550.77}, {'connected_gene': 'GDPGP1', 'score': 550.77}, {'connected_gene': 'ENSG00000284626', 'score': 550.77}, {'connected_gene': 'ENSG00000259212', 'score': 13.28}, {'connected_gene': 'ENSG00000259314', 'score': 13.02}, {'connected_gene': 'UNC45A', 'score': 12.97}, {'connected_gene': 'POLG', 'score': 12.8}, {'connected_gene': 'FANCI', 'score': 12.52}, {'connected_gene': 'TICRR', 'score': 10.08}, {'connected_gene': 'RPS12P26', 'score': 0.31}, {'connected_gene': 'SEMA4B', 'score': 0.19}]
chr15	GH15I089892	89892772	89895042	2.15	[{'connected_gene': 'AP3S2', 'score': 564.22}, {'connected_gene': 'POLG', 'score': 65.57}, {'connected_gene': 'ENSG00000259314', 'score': 42.43}, {'connected_gene': 'LOC100631255', 'score': 35.45}, {'connected_gene': 'NIFKP5', 'score': 29.49}, {'connected_gene': 'FANCI', 'score': 24.76}, {'connected_gene': 'ENSG00000259212', 'score': 22.82}, {'connected_gene': 'RPL36AP43', 'score': 22.75}, {'connected_gene': 'KIF7', 'score': 22.7}, {'connected_gene': 'ARPIN', 'score': 21.28}, {'connected_gene': 'WDR93', 'score': 13.56}, {'connected_gene': 'CRTC3', 'score': 12.9}, {'connected_gene': 'TICRR', 'score': 10.11}, {'connected_gene': 'MFGE8', 'score': 10.1}, {'connected_gene': 'GC15M089889', 'score': 0.44}, {'connected_gene': 'PIR40995', 'score': 0.44}, {'connected_gene': 'C15orf38-AP3S2', 'score': 0.37}]
chr15	GH15I089474	89474133	89474697	0.56	[{'connected_gene': 'NIFKP5', 'score': 24.18}, {'connected_gene': 'ENSG00000228998', 'score': 20.05}, {'connected_gene': 'POLG', 'score': 10.82}, {'connected_gene': 'TICRR', 'score': 2.05}, {'connected_gene': 'MESP1', 'score': 1.38}, {'connected_gene': 'LOC105370964', 'score': 0.44}, {'connected_gene': 'RHCG', 'score': 0.34}]
chr15	GH15I089587	89587387	89588557	0.69	[{'connected_gene': 'ENSG00000259615', 'score': 0.44}, {'connected_gene': 'TICRR', 'score': 0.39}, {'connected_gene': 'ENSG00000259713', 'score': 0.2}, {'connected_gene': 'KIF7', 'score': 0.18}]