PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000248076	[[16999670, 17000109], [17000383, 17003417]]	[[17000000, 17000109], [17000383, 17001432]]
ENST00000599210	[[17000000, 17000109], [17000387, 17000891]]	[[17000000, 17000109], [17000387, 17000620]]
NM_003950	[[16999670, 17000109], [17000383, 17003411]]	[[17000000, 17000109], [17000383, 17001432]]

Promoter

Chrom	Start	End	Description
chr19	16999654	16999673	CAGE_peak_3_at_F2RL3_5end
chr19	16999766	16999777	CAGE_peak_4_at_F2RL3_5end
chr19	16999802	16999844	CAGE_peak_1_at_F2RL3_5end
chr19	16999876	16999884	CAGE_peak_8_at_F2RL3_5end
chr19	16999886	16999899	CAGE_peak_6_at_F2RL3_5end
chr19	16999902	16999936	CAGE_peak_2_at_F2RL3_5end
chr19	16999966	16999976	CAGE_peak_7_at_F2RL3_5end
chr19	17000058	17000065	CAGE_peak_10_at_F2RL3_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr19	GH19I016885	16885564	16890966	1.91	[{'connected_gene': 'F2RL3', 'score': 550.77}, {'connected_gene': 'SIN3B', 'score': 15.76}, {'connected_gene': 'CHERP', 'score': 14.46}, {'connected_gene': 'ENSG00000267904', 'score': 12.35}, {'connected_gene': 'ENSG00000268743', 'score': 12.3}, {'connected_gene': 'C19orf44', 'score': 12.05}, {'connected_gene': 'ENSG00000269578', 'score': 11.98}, {'connected_gene': 'GTPBP3', 'score': 11.37}, {'connected_gene': 'ENSG00000268087', 'score': 11.15}, {'connected_gene': 'SMIM7', 'score': 10.35}, {'connected_gene': 'CPAMD8', 'score': 6.17}, {'connected_gene': 'GC19M016856', 'score': 0.39}]
chr19	GH19I017762	17762179	17763241	1.2	[{'connected_gene': 'MAP1S', 'score': 12.46}, {'connected_gene': 'B3GNT3', 'score': 12.42}, {'connected_gene': 'INSL3', 'score': 11.78}, {'connected_gene': 'PLVAP', 'score': 11.59}, {'connected_gene': 'NXNL1', 'score': 11.53}, {'connected_gene': 'F2RL3', 'score': 11.06}, {'connected_gene': 'GC19M017755', 'score': 0.77}, {'connected_gene': 'GC19P020271', 'score': 0.44}, {'connected_gene': 'FCHO1', 'score': 0.39}]
chr19	GH19I017264	17264001	17269054	2.05	[{'connected_gene': 'BABAM1', 'score': 561.23}, {'connected_gene': 'ENSG00000269307', 'score': 550.77}, {'connected_gene': 'USHBP1', 'score': 550.37}, {'connected_gene': 'CHERP', 'score': 13.08}, {'connected_gene': 'ABHD8', 'score': 12.06}, {'connected_gene': 'PLVAP', 'score': 11.67}, {'connected_gene': 'F2RL3', 'score': 11.09}, {'connected_gene': 'OCEL1', 'score': 10.37}, {'connected_gene': 'GTPBP3', 'score': 8.77}, {'connected_gene': 'ENSG00000269427', 'score': 5.32}, {'connected_gene': 'ANKLE1', 'score': 4.86}, {'connected_gene': 'ENSG00000269095', 'score': 0.39}]
chr19	GH19I016893	16893320	16894612	0.86	[{'connected_gene': 'CPAMD8', 'score': 5.67}, {'connected_gene': 'F2RL3', 'score': 0.44}, {'connected_gene': 'RN7SL835P', 'score': 0.39}]
chr19	GH19I016899	16899730	16899899	0.68	[{'connected_gene': 'CPAMD8', 'score': 4.53}, {'connected_gene': 'RN7SL835P', 'score': 0.44}, {'connected_gene': 'F2RL3', 'score': 0.39}]
chr19	GH19I016863	16863201	16863600	0.88	[{'connected_gene': 'SIN3B', 'score': 562.83}, {'connected_gene': 'F2RL3', 'score': 12.21}, {'connected_gene': 'GC19M016869', 'score': 0.44}, {'connected_gene': 'GC19M016856', 'score': 0.39}, {'connected_gene': 'ENSG00000268743', 'score': 0.37}]
chr19	GH19I016892	16892187	16893221	0.83	[{'connected_gene': 'SIN3B', 'score': 6.09}, {'connected_gene': 'CPAMD8', 'score': 5.62}, {'connected_gene': 'F2RL3', 'score': 0.77}, {'connected_gene': 'RN7SL835P', 'score': 0.39}]
chr19	GH19I017487	17487729	17491289	1.25	[{'connected_gene': 'LOC100507551', 'score': 16.74}, {'connected_gene': 'SLC27A1', 'score': 8.64}, {'connected_gene': 'F2RL3', 'score': 5.09}, {'connected_gene': 'PIR43275', 'score': 0.37}]
chr19	GH19I016896	16896000	16898201	1.67	[{'connected_gene': 'ENSG00000269578', 'score': 20.73}, {'connected_gene': 'MED26', 'score': 14.26}, {'connected_gene': 'CHERP', 'score': 12.74}, {'connected_gene': 'COLGALT1', 'score': 12.36}, {'connected_gene': 'SMIM7', 'score': 12.06}, {'connected_gene': 'HAUS8', 'score': 11.83}, {'connected_gene': 'TPM4', 'score': 10.74}, {'connected_gene': 'ENSG00000268743', 'score': 10.59}, {'connected_gene': 'ENSG00000269481', 'score': 9.97}, {'connected_gene': 'PGLS', 'score': 9.76}, {'connected_gene': 'CPAMD8', 'score': 5.96}, {'connected_gene': 'SIN3B', 'score': 5.83}, {'connected_gene': 'UNC13A', 'score': 5.18}, {'connected_gene': 'F2RL3', 'score': 0.44}, {'connected_gene': 'RN7SL835P', 'score': 0.39}]
chr19	GH19I016877	16877050	16877219	0.72	[{'connected_gene': 'GC19M016856', 'score': 550.77}, {'connected_gene': 'F2RL3', 'score': 0.39}, {'connected_gene': 'SIN3B', 'score': 0.25}]