PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000449823	[[37005966, 37006303], [37007172, 37007358], [37011765, 37012012], [37012203, 37012328], [37012780, 37013004], [37014115, 37014320], [37015254, 37015368], [37016307, 37016441], [37016750, 37017019]]	[[37007193, 37007358], [37011765, 37012012], [37012203, 37012328], [37012780, 37013004], [37014115, 37014320], [37015254, 37015368], [37016307, 37016441], [37016750, 37016802]]
ENST00000440264	[[37005966, 37006303], [37007169, 37007358], [37011765, 37012012], [37012203, 37012328], [37012780, 37013004], [37014115, 37014320], [37015254, 37015368], [37016307, 37016441], [37016750, 37017019]]	[[37007193, 37007358], [37011765, 37012012], [37012203, 37012328], [37012780, 37013004], [37014115, 37014320], [37015254, 37015368], [37016307, 37016441], [37016750, 37016802]]
ENST00000463403	[[37006039, 37006303], [37007169, 37007358], [37011765, 37011848]]	None
ENST00000418263	[[37006408, 37006866], [37007172, 37007358], [37011765, 37012012], [37012203, 37012328], [37012780, 37013004], [37014115, 37014320], [37015254, 37015368], [37016307, 37016441], [37016750, 37017019]]	[[37006758, 37006866], [37007172, 37007358], [37011765, 37012012], [37012203, 37012328], [37012780, 37013004], [37014115, 37014320], [37015254, 37015368], [37016307, 37016441], [37016750, 37016802]]
ENST00000255465	[[37006494, 37006866], [37007169, 37007358], [37011765, 37012012], [37012203, 37012328], [37012780, 37013004], [37014115, 37014320], [37015254, 37015368], [37016307, 37016441], [37016750, 37017019]]	[[37006758, 37006866], [37007169, 37007358], [37011765, 37012012], [37012203, 37012328], [37012780, 37013004], [37014115, 37014320], [37015254, 37015368], [37016307, 37016441], [37016750, 37016802]]
NM_001111047	[[37005966, 37006303], [37007172, 37007358], [37011765, 37012012], [37012203, 37012328], [37012780, 37013004], [37014115, 37014320], [37015254, 37015368], [37016307, 37016441], [37016750, 37017019]]	[[37007193, 37007358], [37011765, 37012012], [37012203, 37012328], [37012780, 37013004], [37014115, 37014320], [37015254, 37015368], [37016307, 37016441], [37016750, 37016802]]
NM_001111046	[[37005966, 37006303], [37007169, 37007358], [37011765, 37012012], [37012203, 37012328], [37012780, 37013004], [37014115, 37014320], [37015254, 37015368], [37016307, 37016441], [37016750, 37017019]]	[[37007193, 37007358], [37011765, 37012012], [37012203, 37012328], [37012780, 37013004], [37014115, 37014320], [37015254, 37015368], [37016307, 37016441], [37016750, 37016802]]
NM_001111045	[[37006408, 37006866], [37007172, 37007358], [37011765, 37012012], [37012203, 37012328], [37012780, 37013004], [37014115, 37014320], [37015254, 37015368], [37016307, 37016441], [37016750, 37017019]]	[[37006758, 37006866], [37007172, 37007358], [37011765, 37012012], [37012203, 37012328], [37012780, 37013004], [37014115, 37014320], [37015254, 37015368], [37016307, 37016441], [37016750, 37016802]]
NM_003914	[[37006408, 37006866], [37007169, 37007358], [37011765, 37012012], [37012203, 37012328], [37012780, 37013004], [37014115, 37014320], [37015254, 37015368], [37016307, 37016441], [37016750, 37017019]]	[[37006758, 37006866], [37007169, 37007358], [37011765, 37012012], [37012203, 37012328], [37012780, 37013004], [37014115, 37014320], [37015254, 37015368], [37016307, 37016441], [37016750, 37016802]]

Promoter

Chrom	Start	End	Description
chr13	37005647	37005661	CAGE_peak_9_at_CCNA1_5end
chr13	37006045	37006056	CAGE_peak_6_at_CCNA1_5end
chr13	37006060	37006068	CAGE_peak_11_at_CCNA1_5end
chr13	37006080	37006097	CAGE_peak_4_at_CCNA1_5end
chr13	37006398	37006417	CAGE_peak_5_at_CCNA1_5end
chr13	37006421	37006487	CAGE_peak_2_at_CCNA1_5end
chr13	37006624	37006638	CAGE_peak_1_at_CCNA1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr13	GH13I036074	36074575	36075308	0.53	[{'connected_gene': 'CCNA1', 'score': 3.98}, {'connected_gene': 'DCLK1', 'score': 2.96}, {'connected_gene': 'CCDC169', 'score': 1.32}, {'connected_gene': 'NMTRQ-TTG10-1', 'score': 0.44}]
chr13	GH13I036432	36432000	36432601	1.8	[{'connected_gene': 'CCNA1', 'score': 550.77}, {'connected_gene': 'CCDC169', 'score': 8.15}, {'connected_gene': 'HIST1H2APS6', 'score': 0.22}]
chr13	GH13I036420	36420484	36420613	0.69	[{'connected_gene': 'CCNA1', 'score': 0.39}, {'connected_gene': 'SPART', 'score': 0.23}]
chr13	GH13I036772	36772675	36773471	0.31	[{'connected_gene': 'CCNA1', 'score': 10.38}, {'connected_gene': 'LOC102723490', 'score': 0.37}, {'connected_gene': 'TCEAL4P1', 'score': 0.29}]
chr13	GH13I036431	36431767	36431826	1.02	[{'connected_gene': 'CCNA1', 'score': 550.77}, {'connected_gene': 'HIST1H2APS6', 'score': 0.22}]
chr13	GH13I036433	36433001	36433200	0.54	[{'connected_gene': 'CCNA1', 'score': 0.77}, {'connected_gene': 'HIST1H2APS6', 'score': 0.22}]
chr13	GH13I036373	36373911	36375536	0.54	[{'connected_gene': 'CCDC169', 'score': 8.04}, {'connected_gene': 'SPART-AS1', 'score': 7.83}, {'connected_gene': 'CCNA1', 'score': 4.55}, {'connected_gene': 'SPART', 'score': 0.77}]
chr13	GH13I036279	36279099	36279122	0.22	[{'connected_gene': 'RFXAP', 'score': 9.82}, {'connected_gene': 'CCDC169', 'score': 6.05}, {'connected_gene': 'CCNA1', 'score': 2.86}, {'connected_gene': 'RNU6-71P', 'score': 0.39}, {'connected_gene': 'CCDC169-SOHLH2', 'score': 0.37}]
chr13	GH13I036717	36717704	36718446	0.2	[{'connected_gene': 'SERTM1', 'score': 10.83}, {'connected_gene': 'CCNA1', 'score': 9.73}, {'connected_gene': 'RFXAP', 'score': 9.55}, {'connected_gene': 'GAPDHP34', 'score': 0.34}, {'connected_gene': 'LOC102723490', 'score': 0.19}]
chr13	GH13I036370	36370147	36370353	1.01	[{'connected_gene': 'SPART', 'score': 550.77}, {'connected_gene': 'CCNA1', 'score': 0.21}]
chr13	GH13I036427	36427725	36428773	0.65	[{'connected_gene': 'SPART-AS1', 'score': 7.02}, {'connected_gene': 'CCDC169', 'score': 5.4}, {'connected_gene': 'CCNA1', 'score': 0.77}, {'connected_gene': 'SPART', 'score': 0.22}]
chr13	GH13I036416	36416900	36418935	1.21	[{'connected_gene': 'SPART-AS1', 'score': 6.72}, {'connected_gene': 'SPART', 'score': 5.48}, {'connected_gene': 'CCNA1', 'score': 0.39}]