PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000372868	[[43343484, 43343802], [43344006, 43344091], [43348537, 43348754], [43353378, 43353633], [43355727, 43356452]]	[[43344031, 43344091], [43348537, 43348754], [43353378, 43353633], [43355727, 43355948]]
ENST00000372865	[[43343523, 43344091], [43348537, 43348762], [43355727, 43356452]]	[[43344031, 43344091], [43348537, 43348762], [43355727, 43356099]]
ENST00000497421	[[43343562, 43344091], [43348537, 43350152]]	None
ENST00000190983	[[43343885, 43344091], [43348537, 43348754], [43353378, 43353633], [43355727, 43356452]]	[[43344031, 43344091], [43348537, 43348754], [43353378, 43353633], [43355727, 43355948]]
ENST00000465000	[[43348627, 43348762], [43353378, 43353633], [43355727, 43356122]]	None
ENST00000471629	[[43352297, 43353633], [43355727, 43357150]]	None
NM_001323370	[[43343484, 43343802], [43344006, 43344091], [43348537, 43348754], [43353378, 43353633], [43355727, 43356453]]	[[43344031, 43344091], [43348537, 43348754], [43353378, 43353633], [43355727, 43355948]]
NM_003881	[[43343484, 43344091], [43348537, 43348754], [43353378, 43353633], [43355727, 43356453]]	[[43344031, 43344091], [43348537, 43348754], [43353378, 43353633], [43355727, 43355948]]
NM_001323369	[[43343484, 43344091], [43348537, 43348762], [43355727, 43356453]]	[[43344031, 43344091], [43348537, 43348762], [43355727, 43356099]]

Promoter

Chrom	Start	End	Description
chr20	43343476	43343487	CAGE_peak_4_at_WISP2_5end
chr20	43343495	43343509	CAGE_peak_3_at_WISP2_5end
chr20	43343517	43343580	CAGE_peak_2_at_WISP2_5end
chr20	43343596	43343608	CAGE_peak_6_at_WISP2_5end
chr20	43343610	43343645	CAGE_peak_5_at_WISP2_5end
chr20	43343646	43343655	CAGE_peak_7_at_WISP2_5end
chr20	43344001	43344020	CAGE_peak_1_at_WISP2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr20	GH20I044688	44688360	44688509	0.51	[{'connected_gene': 'WISP2', 'score': 12.61}, {'connected_gene': 'KCNK15', 'score': 11.24}, {'connected_gene': 'KCNK15-AS1', 'score': 11.24}, {'connected_gene': 'ADA', 'score': 11.17}, {'connected_gene': 'SERINC3', 'score': 10.47}, {'connected_gene': 'PKIG', 'score': 10.04}, {'connected_gene': 'ENSG00000132832', 'score': 0.44}, {'connected_gene': 'LINC01260', 'score': 0.37}]
chr20	GH20I044713	44713871	44717748	1.78	[{'connected_gene': 'WISP2', 'score': 550.77}, {'connected_gene': 'KCNK15', 'score': 0.31}, {'connected_gene': 'KCNK15-AS1', 'score': 0.29}]
chr20	GH20I044724	44724505	44724787	0.2	[{'connected_gene': 'WISP2', 'score': 0.44}, {'connected_gene': 'KCNK15', 'score': 0.34}, {'connected_gene': 'KCNK15-AS1', 'score': 0.34}]
chr20	GH20I044720	44718140	44718289	0.8	[{'connected_gene': 'WISP2', 'score': 0.77}, {'connected_gene': 'KCNK15', 'score': 0.31}, {'connected_gene': 'KCNK15-AS1', 'score': 0.31}]
chr20	GH20I044718	44718457	44719460	0.54	[{'connected_gene': 'WISP2', 'score': 0.77}, {'connected_gene': 'KCNK15', 'score': 0.31}, {'connected_gene': 'KCNK15-AS1', 'score': 0.31}]
chr20	GH20I044860	44860983	44864204	0.79	[{'connected_gene': 'YWHAB', 'score': 17.9}, {'connected_gene': 'KCNK15', 'score': 11.61}, {'connected_gene': 'KCNK15-AS1', 'score': 11.61}, {'connected_gene': 'RIMS4', 'score': 11.35}, {'connected_gene': 'WISP2', 'score': 11.22}, {'connected_gene': 'ENSG00000132832', 'score': 10.84}, {'connected_gene': 'PABPC1L', 'score': 10.4}, {'connected_gene': 'GC20M044881', 'score': 0.37}, {'connected_gene': 'GC20M044880', 'score': 0.37}, {'connected_gene': 'PGBD4P2', 'score': 0.34}]
chr20	GH20I045334	45334860	45349300	2.82	[{'connected_gene': 'SDC4', 'score': 558.55}, {'connected_gene': 'NCOA5', 'score': 126.07}, {'connected_gene': 'PCIF1', 'score': 45.76}, {'connected_gene': 'ZNF335', 'score': 40.8}, {'connected_gene': 'ZSWIM1', 'score': 25.21}, {'connected_gene': 'CD40', 'score': 23.57}, {'connected_gene': 'SPATA25', 'score': 22.75}, {'connected_gene': 'ENSG00000271984', 'score': 20.51}, {'connected_gene': 'SNX21', 'score': 16.62}, {'connected_gene': 'DBNDD2', 'score': 13.61}, {'connected_gene': 'SYS1-DBNDD2', 'score': 12.42}, {'connected_gene': 'KCNK15', 'score': 11.52}, {'connected_gene': 'SYS1', 'score': 10.81}, {'connected_gene': 'PIGT', 'score': 10.65}, {'connected_gene': 'WISP2', 'score': 10.49}, {'connected_gene': 'DNTTIP1', 'score': 10.36}, {'connected_gene': 'RBPJL', 'score': 5.12}, {'connected_gene': 'WFDC12', 'score': 4.93}, {'connected_gene': 'SLPI', 'score': 4.86}, {'connected_gene': 'ENSG00000275894', 'score': 0.77}, {'connected_gene': 'TRV-CAC14-1', 'score': 0.37}]
chr20	GH20I044719	44719576	44722235	1.22	[{'connected_gene': 'KCNK15', 'score': 6.68}, {'connected_gene': 'WISP2', 'score': 0.44}, {'connected_gene': 'KCNK15-AS1', 'score': 0.31}]
chr20	GH20I044710	44710342	44712875	0.49	[{'connected_gene': 'KCNK15', 'score': 11.12}, {'connected_gene': 'KCNK15-AS1', 'score': 11.12}, {'connected_gene': 'WISP2', 'score': 0.77}, {'connected_gene': 'ENSG00000132832', 'score': 0.37}]
chr20	GH20I044738	44738778	44739438	1.25	[{'connected_gene': 'KCNK15', 'score': 5.76}, {'connected_gene': 'KCNK15-AS1', 'score': 0.44}, {'connected_gene': 'WISP2', 'score': 0.34}]
chr20	GH20I044702	44702435	44707194	1.2	[{'connected_gene': 'KCNK15', 'score': 11.68}, {'connected_gene': 'KCNK15-AS1', 'score': 11.68}, {'connected_gene': 'SDC4', 'score': 9.85}, {'connected_gene': 'ENSG00000132832', 'score': 8.18}, {'connected_gene': 'HSPD1P21', 'score': 4.36}, {'connected_gene': 'WISP2', 'score': 0.39}]
chr20	GH20I044206	44206836	44212942	2.33	[{'connected_gene': 'OSER1', 'score': 570.29}, {'connected_gene': 'OSER1-AS1', 'score': 566.22}, {'connected_gene': 'SRSF6', 'score': 22.04}, {'connected_gene': 'FITM2', 'score': 12.3}, {'connected_gene': 'L3MBTL1', 'score': 11.73}, {'connected_gene': 'KCNK15', 'score': 11.53}, {'connected_gene': 'IFT52', 'score': 11.19}, {'connected_gene': 'WISP2', 'score': 10.49}, {'connected_gene': 'JPH2', 'score': 0.34}]
chr20	GH20I044722	44722732	44723371	0.56	[{'connected_gene': 'KCNK15-AS1', 'score': 5.8}, {'connected_gene': 'WISP2', 'score': 0.44}, {'connected_gene': 'KCNK15', 'score': 0.34}]
chr20	GH20I044640	44640672	44653201	2.57	[{'connected_gene': 'ADA', 'score': 561.63}, {'connected_gene': 'GC20M044554', 'score': 550.77}, {'connected_gene': 'GDAP1L1', 'score': 13.68}, {'connected_gene': 'KCNK15', 'score': 11.65}, {'connected_gene': 'PKIG', 'score': 11.25}, {'connected_gene': 'WISP2', 'score': 10.66}, {'connected_gene': 'SYS1', 'score': 9.78}, {'connected_gene': 'ENSG00000132832', 'score': 9.01}, {'connected_gene': 'OSER1', 'score': 3.0}, {'connected_gene': 'STK4', 'score': 1.7}, {'connected_gene': 'GC20P044636', 'score': 0.39}]
chr20	GH20I044698	44698454	44698735	0.62	[{'connected_gene': 'ADA', 'score': 6.66}, {'connected_gene': 'PI3', 'score': 4.74}, {'connected_gene': 'PABPC1L', 'score': 4.38}, {'connected_gene': 'KCNK15', 'score': 1.49}, {'connected_gene': 'ENSG00000132832', 'score': 0.77}, {'connected_gene': 'WISP2', 'score': 0.37}, {'connected_gene': 'KCNK15-AS1', 'score': 0.25}]
chr20	GH20I044700	44700780	44702100	1.16	[{'connected_gene': 'ENSG00000132832', 'score': 20.57}, {'connected_gene': 'SYS1', 'score': 9.78}, {'connected_gene': 'ADA', 'score': 6.78}, {'connected_gene': 'WISP2', 'score': 0.39}, {'connected_gene': 'KCNK15-AS1', 'score': 0.26}]
chr20	GH20I044690	44690836	44697249	1.7	[{'connected_gene': 'ENSG00000132832', 'score': 16.52}, {'connected_gene': 'WISP2', 'score': 15.96}, {'connected_gene': 'KCNK15', 'score': 13.8}, {'connected_gene': 'KCNK15-AS1', 'score': 11.33}, {'connected_gene': 'ADA', 'score': 11.15}, {'connected_gene': 'SERINC3', 'score': 10.46}, {'connected_gene': 'PKIG', 'score': 10.04}, {'connected_gene': 'PIGT', 'score': 4.62}, {'connected_gene': 'PABPC1L', 'score': 4.39}, {'connected_gene': 'LINC01260', 'score': 0.34}]
chr20	GH20I044665	44665833	44667072	0.2	[{'connected_gene': 'ENSG00000132832', 'score': 20.07}, {'connected_gene': 'WISP2', 'score': 12.01}, {'connected_gene': 'KCNK15-AS1', 'score': 11.28}, {'connected_gene': 'PKIG', 'score': 10.25}, {'connected_gene': 'GC20P044658', 'score': 0.44}, {'connected_gene': 'LINC01260', 'score': 0.44}]
chr20	GH20I044709	44709257	44710322	0.2	[{'connected_gene': 'ENSG00000132832', 'score': 20.58}, {'connected_gene': 'KCNK15', 'score': 11.1}, {'connected_gene': 'KCNK15-AS1', 'score': 11.1}, {'connected_gene': 'WISP2', 'score': 0.44}]
chr20	GH20I044737	44735100	44735249	0.83	[{'connected_gene': 'ENSG00000132832', 'score': 12.11}, {'connected_gene': 'PKIG', 'score': 10.11}, {'connected_gene': 'KCNK15', 'score': 0.39}, {'connected_gene': 'KCNK15-AS1', 'score': 0.39}, {'connected_gene': 'WISP2', 'score': 0.34}]
chr20	GH20I044735	44735793	44737071	1.35	[{'connected_gene': 'ENSG00000132832', 'score': 12.1}, {'connected_gene': 'PKIG', 'score': 10.11}, {'connected_gene': 'KCNK15-AS1', 'score': 6.63}, {'connected_gene': 'KCNK15', 'score': 0.44}, {'connected_gene': 'WISP2', 'score': 0.34}]
chr20	GH20I044736	44735371	44735693	0.72	[{'connected_gene': 'ENSG00000132832', 'score': 12.11}, {'connected_gene': 'PKIG', 'score': 10.11}, {'connected_gene': 'KCNK15-AS1', 'score': 6.85}, {'connected_gene': 'KCNK15', 'score': 0.39}, {'connected_gene': 'WISP2', 'score': 0.34}]
chr20	GH20I044726	44726726	44734129	1.41	[{'connected_gene': 'ENSG00000132832', 'score': 17.32}, {'connected_gene': 'PKIG', 'score': 10.11}, {'connected_gene': 'KCNK15-AS1', 'score': 7.39}, {'connected_gene': 'KCNK15', 'score': 5.94}, {'connected_gene': 'WISP2', 'score': 0.37}]
chr20	GH20I044683	44683473	44685949	1.29	[{'connected_gene': 'ENSG00000132832', 'score': 44.95}, {'connected_gene': 'ADA', 'score': 18.03}, {'connected_gene': 'KCNK15', 'score': 15.97}, {'connected_gene': 'WISP2', 'score': 12.59}, {'connected_gene': 'KCNK15-AS1', 'score': 11.23}, {'connected_gene': 'SERINC3', 'score': 10.47}, {'connected_gene': 'PKIG', 'score': 10.05}, {'connected_gene': 'OSER1-AS1', 'score': 5.33}, {'connected_gene': 'LINC01260', 'score': 0.39}]