PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000552864	[[81186298, 81191505], [81205243, 81205462], [81239508, 81239718], [81242029, 81242101], [81283029, 81283148], [81331419, 81331704]]	[[81205243, 81205462], [81239508, 81239718], [81242029, 81242101], [81283029, 81283148], [81331419, 81331501]]
ENST00000261203	[[81191353, 81191505], [81205243, 81205462], [81239508, 81239718], [81241877, 81241954], [81242029, 81242101], [81283029, 81283148], [81331419, 81331559]]	[[81241921, 81241954], [81242029, 81242101], [81283029, 81283148], [81331419, 81331501]]
ENST00000549417	[[81235467, 81235907], [81239508, 81239718], [81242029, 81242101], [81283029, 81283148], [81331419, 81331483]]	[[81235829, 81235907], [81239508, 81239718], [81242029, 81242101], [81283029, 81283148], [81331419, 81331483]]
ENST00000552093	[[81239342, 81239718], [81242029, 81242101], [81283029, 81283127]]	[[81239496, 81239718], [81242029, 81242101], [81283029, 81283127]]
NR_136888	[[81186298, 81191505], [81205243, 81205462], [81239508, 81239718], [81241877, 81241954], [81242029, 81242101], [81283029, 81283148], [81331419, 81331694]]	None
NM_004664	[[81186298, 81191505], [81205243, 81205462], [81239508, 81239718], [81242029, 81242101], [81283029, 81283148], [81331419, 81331694]]	[[81205243, 81205462], [81239508, 81239718], [81242029, 81242101], [81283029, 81283148], [81331419, 81331501]]
NR_136887	[[81186298, 81191505], [81205243, 81205462], [81239508, 81239718], [81241877, 81241954], [81242029, 81242101], [81331419, 81331694]]	None
NM_001324423	[[81186298, 81191505], [81205243, 81205462], [81239508, 81239718], [81242029, 81242101], [81331419, 81331694]]	[[81205243, 81205462], [81239508, 81239718], [81242029, 81242089]]

Promoter

Chrom	Start	End	Description
chr12	81331460	81331505	CAGE_peak_1_at_LIN7A_5end
chr12	81331512	81331533	CAGE_peak_3_at_LIN7A_5end
chr12	81331647	81331658	CAGE_peak_6_at_LIN7A_5end
chr12	81331675	81331696	CAGE_peak_4_at_LIN7A_5end
chr12	81331697	81331733	CAGE_peak_2_at_LIN7A_5end
chr12	81331735	81331748	CAGE_peak_5_at_LIN7A_5end
chr12	81332008	81332022	CAGE_peak_7_at_LIN7A_5end
chr12	81332033	81332044	CAGE_peak_8_at_LIN7A_5end
chr12	81332055	81332060	CAGE_peak_9_at_LIN7A_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr12	GH12I080936	80936029	80940311	1.94	[{'connected_gene': 'LIN7A', 'score': 556.98}, {'connected_gene': 'ACSS3', 'score': 550.77}, {'connected_gene': 'LOC105369869', 'score': 0.77}, {'connected_gene': 'ENSG00000258026', 'score': 0.09}]
chr12	GH12I080893	80893622	80893771	0.2	[{'connected_gene': 'LIN7A', 'score': 11.28}, {'connected_gene': 'GC12M080862', 'score': 0.29}, {'connected_gene': 'LOC100420442', 'score': 0.29}, {'connected_gene': 'MIR618', 'score': 0.26}]
chr12	GH12I080867	80867327	80869535	0.71	[{'connected_gene': 'LIN7A', 'score': 10.57}, {'connected_gene': 'GC12M080862', 'score': 0.44}, {'connected_gene': 'LOC100420442', 'score': 0.44}, {'connected_gene': 'MIR618', 'score': 0.2}]
chr12	GH12I080877	80877864	80877918	0.36	[{'connected_gene': 'LIN7A', 'score': 2.68}, {'connected_gene': 'GC12M080862', 'score': 0.37}, {'connected_gene': 'LOC100420442', 'score': 0.37}, {'connected_gene': 'MIR618', 'score': 0.22}]
chr12	GH12I081095	81095062	81095211	0.31	[{'connected_gene': 'ACSS3', 'score': 11.45}, {'connected_gene': 'ENSG00000258026', 'score': 0.29}, {'connected_gene': 'LIN7A', 'score': 0.1}]
chr12	GH12I081080	81080426	81081200	0.77	[{'connected_gene': 'ACSS3', 'score': 19.8}, {'connected_gene': 'ENSG00000258026', 'score': 0.25}, {'connected_gene': 'LIN7A', 'score': 0.11}]
chr12	GH12I081076	81076942	81080316	1.93	[{'connected_gene': 'ACSS3', 'score': 569.59}, {'connected_gene': 'ENSG00000258026', 'score': 0.25}, {'connected_gene': 'LIN7A', 'score': 0.11}]
chr12	GH12I080925	80925342	80925491	0.31	[{'connected_gene': 'MIR618', 'score': 0.39}, {'connected_gene': 'LIN7A', 'score': 0.39}, {'connected_gene': 'GC12M080862', 'score': 0.21}, {'connected_gene': 'LOC100420442', 'score': 0.21}]
chr12	GH12I080837	80837462	80837611	0.62	[{'connected_gene': 'MIR617', 'score': 0.77}, {'connected_gene': 'GC12P080845', 'score': 0.44}, {'connected_gene': 'LIN7A', 'score': 0.15}]
chr12	GH12I080821	80821498	80822229	0.46	[{'connected_gene': 'MIR617', 'score': 0.39}, {'connected_gene': 'GC12M080765', 'score': 0.37}, {'connected_gene': 'LIN7A', 'score': 0.13}]
chr12	GH12I081086	81086381	81086883	0.89	[{'connected_gene': 'ENSG00000258026', 'score': 0.28}, {'connected_gene': 'LIN7A', 'score': 0.11}, {'connected_gene': 'ACSS3', 'score': 0.1}]
chr12	GH12I081096	81095942	81096091	0.2	[{'connected_gene': 'ENSG00000258026', 'score': 0.31}, {'connected_gene': 'ACSS3', 'score': 0.1}, {'connected_gene': 'LIN7A', 'score': 0.1}]
chr12	GH12I080838	80838202	80838351	0.31	[{'connected_gene': 'GC12P080845', 'score': 0.44}, {'connected_gene': 'MIR617', 'score': 0.44}, {'connected_gene': 'LIN7A', 'score': 0.15}]
chr12	GH12I080847	80847062	80847211	0.43	[{'connected_gene': 'GC12P080845', 'score': 0.77}, {'connected_gene': 'GC12M080862', 'score': 0.39}, {'connected_gene': 'LOC100420442', 'score': 0.39}, {'connected_gene': 'LIN7A', 'score': 0.16}]