PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000504618	[[174291119, 174291203], [174291716, 174291844], [174292185, 174292383]]	None
ENST00000296504	[[174292093, 174292648], [174294540, 174294666], [174295089, 174295188], [174298355, 174298683]]	[[174292333, 174292648], [174294540, 174294666], [174295089, 174295188], [174298355, 174298478]]
NM_003864	[[174292092, 174292648], [174294540, 174294666], [174295089, 174295188], [174298355, 174298683]]	[[174292333, 174292648], [174294540, 174294666], [174295089, 174295188], [174298355, 174298478]]

Promoter

Chrom	Start	End	Description
chr4	174291085	174291131	CAGE_peak_3_at_SAP30_5end
chr4	174292058	174292130	CAGE_peak_1_at_SAP30_5end
chr4	174292157	174292168	CAGE_peak_2_at_SAP30_5end
chr4	174292321	174292336	CAGE_peak_4_at_SAP30_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr4	GH04I173369	173369000	173373201	2.28	[{'connected_gene': 'SAP30', 'score': 550.77}, {'connected_gene': 'LOC105377540', 'score': 550.77}, {'connected_gene': 'HMGB2', 'score': 13.07}, {'connected_gene': 'ENSG00000248774', 'score': 13.05}, {'connected_gene': 'SCRG1', 'score': 12.41}, {'connected_gene': 'CEP44', 'score': 9.11}, {'connected_gene': 'FBXO8', 'score': 9.11}, {'connected_gene': 'LOC101928383', 'score': 0.39}, {'connected_gene': 'GC04M173250', 'score': 0.06}]
chr4	GH04I173414	173414801	173417599	1.48	[{'connected_gene': 'CEP44', 'score': 31.14}, {'connected_gene': 'HMGB2', 'score': 24.74}, {'connected_gene': 'ENSG00000261646', 'score': 20.77}, {'connected_gene': 'HAND2-AS1', 'score': 10.2}, {'connected_gene': 'SAP30', 'score': 1.34}, {'connected_gene': 'RPL5P11', 'score': 0.77}, {'connected_gene': 'LOC101928383', 'score': 0.29}, {'connected_gene': 'SCRG1', 'score': 0.21}, {'connected_gene': 'GC04M173250', 'score': 0.07}]
chr4	GH04I173374	173374001	173374200	0.31	[{'connected_gene': 'HMGB2', 'score': 13.07}, {'connected_gene': 'ENSG00000248774', 'score': 13.05}, {'connected_gene': 'SCRG1', 'score': 12.41}, {'connected_gene': 'FBXO8', 'score': 9.11}, {'connected_gene': 'CEP44', 'score': 9.1}, {'connected_gene': 'SAP30', 'score': 0.77}, {'connected_gene': 'LOC105377540', 'score': 0.77}, {'connected_gene': 'LOC101928383', 'score': 0.39}, {'connected_gene': 'GC04M173250', 'score': 0.06}]
chr4	GH04I173366	173366886	173368445	0.85	[{'connected_gene': 'HMGB2', 'score': 13.58}, {'connected_gene': 'ENSG00000248774', 'score': 13.56}, {'connected_gene': 'SCRG1', 'score': 12.79}, {'connected_gene': 'RNU6-1096P', 'score': 10.19}, {'connected_gene': 'CEP44', 'score': 9.11}, {'connected_gene': 'FBXO8', 'score': 9.11}, {'connected_gene': 'SAP30', 'score': 0.77}, {'connected_gene': 'LOC105377540', 'score': 0.77}, {'connected_gene': 'GC04P173358', 'score': 0.44}, {'connected_gene': 'GC04M173250', 'score': 0.06}]