PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000221132	[[23047964, 23049526], [23054644, 23054717], [23056778, 23056961], [23057398, 23057430], [23058017, 23058113], [23058199, 23058273], [23059320, 23059432], [23060160, 23060274], [23069628, 23069725], [23082268, 23082639]]	[[23049206, 23049526], [23054644, 23054717], [23056778, 23056961], [23057398, 23057430], [23058017, 23058113], [23058199, 23058273], [23059320, 23059432], [23060160, 23060274], [23069628, 23069725], [23082268, 23082574]]
ENST00000524158	[[23057398, 23057430], [23058017, 23058113], [23058199, 23058273], [23059320, 23059432], [23060160, 23060274], [23069628, 23069725], [23081945, 23082113]]	[[23057398, 23057430], [23058017, 23058113], [23058199, 23058273], [23059320, 23059343]]
ENST00000519862	[[23049326, 23049526], [23054644, 23054786]]	None
NM_003844	[[23048969, 23049526], [23054644, 23054717], [23056778, 23056961], [23057398, 23057430], [23058017, 23058113], [23058199, 23058273], [23059320, 23059432], [23060160, 23060274], [23069628, 23069725], [23082268, 23082680]]	[[23049206, 23049526], [23054644, 23054717], [23056778, 23056961], [23057398, 23057430], [23058017, 23058113], [23058199, 23058273], [23059320, 23059432], [23060160, 23060274], [23069628, 23069725], [23082268, 23082574]]

Promoter

Chrom	Start	End	Description
chr8	23082580	23082657	CAGE_peak_1_at_TNFRSF10A_5end
chr8	23082897	23082963	CAGE_peak_2_at_TNFRSF10A_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr8	GH08I023252	23252795	23253435	0.6	[{'connected_gene': 'CHMP7', 'score': 13.2}, {'connected_gene': 'TNFRSF10A', 'score': 13.11}, {'connected_gene': 'ENSG00000250714', 'score': 11.51}, {'connected_gene': 'LOC105379326', 'score': 0.44}]
chr8	GH08I023217	23217150	23222000	1.34	[{'connected_gene': 'CHMP7', 'score': 29.45}, {'connected_gene': 'ENSG00000253200', 'score': 20.65}, {'connected_gene': 'TNFRSF10A', 'score': 17.2}, {'connected_gene': 'LOC100507071', 'score': 12.56}, {'connected_gene': 'CCAR2', 'score': 12.52}, {'connected_gene': 'C8orf58', 'score': 12.29}, {'connected_gene': 'SORBS3', 'score': 12.01}, {'connected_gene': 'LOC107986927', 'score': 11.8}, {'connected_gene': 'TNFRSF10C', 'score': 11.05}, {'connected_gene': 'R3HCC1', 'score': 10.87}, {'connected_gene': 'ENTPD4', 'score': 10.47}, {'connected_gene': 'LOC100507156', 'score': 9.85}, {'connected_gene': 'LOC389641', 'score': 8.06}, {'connected_gene': 'TNFRSF10B', 'score': 1.55}, {'connected_gene': 'PIR52536', 'score': 0.39}]
chr8	GH08I023242	23242430	23247915	2.3	[{'connected_gene': 'CHMP7', 'score': 568.32}, {'connected_gene': 'SORBS3', 'score': 13.78}, {'connected_gene': 'TNFRSF10A', 'score': 12.23}, {'connected_gene': 'LOC105379326', 'score': 0.37}]
chr8	GH08I023240	23240825	23241720	0.58	[{'connected_gene': 'TNFRSF10A', 'score': 13.62}, {'connected_gene': 'CHMP7', 'score': 11.71}, {'connected_gene': 'ENSG00000250714', 'score': 0.39}]
chr8	GH08I023180	23180202	23183081	1.51	[{'connected_gene': 'TNFRSF10A', 'score': 12.79}, {'connected_gene': 'LOC389641', 'score': 12.79}, {'connected_gene': 'ENSG00000250714', 'score': 11.83}, {'connected_gene': 'CHMP7', 'score': 10.75}, {'connected_gene': 'R3HCC1', 'score': 10.71}, {'connected_gene': 'ENTPD4', 'score': 1.64}, {'connected_gene': 'TNFRSF10D', 'score': 1.47}, {'connected_gene': 'TNFRSF10A-AS1', 'score': 0.44}]
chr8	GH08I023223	23223379	23226908	1.98	[{'connected_gene': 'TNFRSF10A', 'score': 597.0}, {'connected_gene': 'LOC389641', 'score': 550.77}, {'connected_gene': 'BIN3', 'score': 13.32}, {'connected_gene': 'CCAR2', 'score': 12.87}, {'connected_gene': 'ENSG00000253200', 'score': 11.61}, {'connected_gene': 'ENSG00000250714', 'score': 0.44}]
chr8	GH08I023159	23159833	23164944	2.49	[{'connected_gene': 'TNFRSF10D', 'score': 557.76}, {'connected_gene': 'ENSG00000253200', 'score': 47.32}, {'connected_gene': 'ENTPD4', 'score': 31.4}, {'connected_gene': 'C8orf58', 'score': 28.97}, {'connected_gene': 'POLR3D', 'score': 24.37}, {'connected_gene': 'CCAR2', 'score': 22.78}, {'connected_gene': 'BIN3', 'score': 13.46}, {'connected_gene': 'CHMP7', 'score': 12.77}, {'connected_gene': 'TNFRSF10A', 'score': 11.98}, {'connected_gene': 'LOC389641', 'score': 11.98}, {'connected_gene': 'ENSG00000250714', 'score': 11.88}, {'connected_gene': 'TNFRSF10C', 'score': 11.59}, {'connected_gene': 'R3HCC1', 'score': 11.35}, {'connected_gene': 'SORBS3', 'score': 11.29}, {'connected_gene': 'LOC107986927', 'score': 10.64}, {'connected_gene': 'LOXL2', 'score': 10.36}, {'connected_gene': 'ENSG00000253390', 'score': 10.34}, {'connected_gene': 'TNFRSF10B', 'score': 6.08}, {'connected_gene': 'GC08P023143', 'score': 0.37}]
chr8	GH08I023222	23222248	23222381	0.38	[{'connected_gene': 'SLC25A37', 'score': 4.61}, {'connected_gene': 'TNFRSF10A', 'score': 0.77}, {'connected_gene': 'LOC389641', 'score': 0.77}, {'connected_gene': 'PIR52536', 'score': 0.39}]
chr8	GH08I023174	23174526	23178458	1.41	[{'connected_gene': 'LOC389641', 'score': 16.82}, {'connected_gene': 'CHMP7', 'score': 12.27}, {'connected_gene': 'TNFRSF10A', 'score': 11.98}, {'connected_gene': 'ENSG00000250714', 'score': 11.82}, {'connected_gene': 'R3HCC1', 'score': 11.27}, {'connected_gene': 'TNFRSF10C', 'score': 11.22}, {'connected_gene': 'TNFRSF10D', 'score': 2.76}, {'connected_gene': 'TNFRSF10B', 'score': 1.91}, {'connected_gene': 'TNFRSF10A-AS1', 'score': 0.39}]
chr8	GH08I023301	23301983	23307722	1.16	[{'connected_gene': 'R3HCC1', 'score': 20.74}, {'connected_gene': 'CHMP7', 'score': 17.55}, {'connected_gene': 'LOC100507156', 'score': 11.85}, {'connected_gene': 'TNFRSF10A', 'score': 11.35}, {'connected_gene': 'LOC389641', 'score': 11.34}, {'connected_gene': 'LOXL2', 'score': 7.34}, {'connected_gene': 'GC08P023294', 'score': 0.44}]
chr8	GH08I023300	23300368	23301557	0.58	[{'connected_gene': 'R3HCC1', 'score': 12.65}, {'connected_gene': 'CHMP7', 'score': 12.58}, {'connected_gene': 'LOC100507156', 'score': 11.95}, {'connected_gene': 'TNFRSF10A', 'score': 11.35}, {'connected_gene': 'LOC389641', 'score': 11.35}, {'connected_gene': 'LOXL2', 'score': 10.94}, {'connected_gene': 'GC08P023294', 'score': 0.44}]
chr8	GH08I023307	23307974	23308853	0.2	[{'connected_gene': 'LOC100507156', 'score': 11.86}, {'connected_gene': 'R3HCC1', 'score': 11.64}, {'connected_gene': 'CHMP7', 'score': 11.57}, {'connected_gene': 'TNFRSF10A', 'score': 11.34}, {'connected_gene': 'LOC389641', 'score': 11.34}, {'connected_gene': 'LOXL2', 'score': 4.84}, {'connected_gene': 'GC08P023294', 'score': 0.39}]
chr8	GH08I023230	23230379	23231558	1.07	[{'connected_gene': 'ENSG00000250714', 'score': 550.77}, {'connected_gene': 'TNFRSF10A', 'score': 40.9}, {'connected_gene': 'LOC389641', 'score': 0.44}, {'connected_gene': 'CHMP7', 'score': 0.39}]
chr8	GH08I023227	23227201	23227400	0.38	[{'connected_gene': 'ENSG00000250714', 'score': 0.77}, {'connected_gene': 'TNFRSF10A', 'score': 0.77}, {'connected_gene': 'LOC389641', 'score': 0.77}]