PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Promoter

Chrom	Start	End	Description
chr17	7461486	7461505	CAGE_peak_5_at_TNFSF13_5end
chr17	7461580	7461606	CAGE_peak_3_at_TNFSF13_5end
chr17	7461613	7461645	CAGE_peak_6_at_TNFSF13_5end
chr17	7461732	7461744	CAGE_peak_16_at_TNFSF13_5end
chr17	7461753	7461777	CAGE_peak_4_at_TNFSF13_5end
chr17	7461781	7461820	CAGE_peak_8_at_TNFSF13_5end
chr17	7461849	7461873	CAGE_peak_11_at_TNFSF13_5end
chr17	7462009	7462021	CAGE_peak_12_at_TNFSF13_5end
chr17	7462031	7462086	CAGE_peak_2_at_TNFSF13_5end
chr17	7462091	7462102	CAGE_peak_9_at_TNFSF13_5end
chr17	7462103	7462110	CAGE_peak_14_at_TNFSF13_5end
chr17	7462261	7462266	CAGE_peak_13_at_TNFSF13_5end
chr17	7462268	7462279	CAGE_peak_7_at_TNFSF13_5end
chr17	7462297	7462342	CAGE_peak_1_at_TNFSF13_5end
chr17	7462347	7462356	CAGE_peak_10_at_TNFSF13_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr17	GH17I007556	7556244	7563337	2.24	[{'connected_gene': 'TNFSF13', 'score': 555.97}, {'connected_gene': 'GC17P007747', 'score': 550.77}, {'connected_gene': 'SENP3', 'score': 550.77}, {'connected_gene': 'ENSG00000276384', 'score': 550.77}, {'connected_gene': 'SAT2', 'score': 23.08}, {'connected_gene': 'CHRNB1', 'score': 20.68}, {'connected_gene': 'TNFSF12', 'score': 11.66}, {'connected_gene': 'SNORA48', 'score': 5.15}, {'connected_gene': 'SENP3-EIF4A1', 'score': 0.77}, {'connected_gene': 'TNFSF12-TNFSF13', 'score': 0.39}]
chr17	GH17I007571	7571056	7585261	2.56	[{'connected_gene': 'SNORD10', 'score': 599.71}, {'connected_gene': 'EIF4A1', 'score': 584.56}, {'connected_gene': 'SNORA67', 'score': 550.77}, {'connected_gene': 'PIR46508', 'score': 550.77}, {'connected_gene': 'CD68', 'score': 550.77}, {'connected_gene': 'GC17P007742', 'score': 550.77}, {'connected_gene': 'GC17P007737', 'score': 550.77}, {'connected_gene': 'GC17P007739', 'score': 550.77}, {'connected_gene': 'GC17P007735', 'score': 550.77}, {'connected_gene': 'MPDU1', 'score': 550.44}, {'connected_gene': 'DVL2', 'score': 90.08}, {'connected_gene': 'PFAS', 'score': 62.14}, {'connected_gene': 'CTC1', 'score': 55.51}, {'connected_gene': 'SNORA48', 'score': 45.17}, {'connected_gene': 'CNTROB', 'score': 41.8}, {'connected_gene': 'POLR2A', 'score': 40.65}, {'connected_gene': 'ENSG00000262089', 'score': 34.89}, {'connected_gene': 'PLSCR3', 'score': 32.41}, {'connected_gene': 'PER1', 'score': 31.89}, {'connected_gene': 'ENSG00000265749', 'score': 30.9}, {'connected_gene': 'KDM6B', 'score': 26.87}, {'connected_gene': 'SAT2', 'score': 25.39}, {'connected_gene': 'GPS2', 'score': 24.16}, {'connected_gene': 'WRAP53', 'score': 24.12}, {'connected_gene': 'KCTD11', 'score': 21.1}, {'connected_gene': 'TP53', 'score': 20.21}, {'connected_gene': 'SENP3', 'score': 19.8}, {'connected_gene': 'MIR324', 'score': 19.24}, {'connected_gene': 'LOC100996842', 'score': 18.62}, {'connected_gene': 'RPL26', 'score': 13.87}, {'connected_gene': 'SHBG', 'score': 10.33}, {'connected_gene': 'CHD3', 'score': 9.91}, {'connected_gene': 'ALOX12-AS1', 'score': 9.8}, {'connected_gene': 'NEURL4', 'score': 9.7}, {'connected_gene': 'CHRNB1', 'score': 9.4}, {'connected_gene': 'TNFSF12', 'score': 9.29}, {'connected_gene': 'ATP1B2', 'score': 7.18}, {'connected_gene': 'TMEM102', 'score': 6.07}, {'connected_gene': 'TNFSF13', 'score': 5.72}, {'connected_gene': 'TMEM107', 'score': 4.84}, {'connected_gene': 'PIR59849', 'score': 0.77}, {'connected_gene': 'GC17P007729', 'score': 0.77}, {'connected_gene': 'PIR46619', 'score': 0.44}, {'connected_gene': 'GC17P007743', 'score': 0.44}, {'connected_gene': 'ENSG00000264772', 'score': 0.44}, {'connected_gene': 'SENP3-EIF4A1', 'score': 0.37}]
chr17	GH17I007347	7347306	7356331	2.26	[{'connected_gene': 'TMEM95', 'score': 550.77}, {'connected_gene': 'GC17P007353', 'score': 550.77}, {'connected_gene': 'KCTD11', 'score': 550.77}, {'connected_gene': 'DVL2', 'score': 25.06}, {'connected_gene': 'ELP5', 'score': 15.45}, {'connected_gene': 'WRAP53', 'score': 11.59}, {'connected_gene': 'LOC100996842', 'score': 11.55}, {'connected_gene': 'PFAS', 'score': 10.74}, {'connected_gene': 'CNTROB', 'score': 9.72}, {'connected_gene': 'CD68', 'score': 6.42}, {'connected_gene': 'TNFSF13', 'score': 5.97}, {'connected_gene': 'NLGN2', 'score': 5.74}, {'connected_gene': 'CHRNB1', 'score': 5.16}, {'connected_gene': 'ACAP1', 'score': 4.91}, {'connected_gene': 'ENSG00000263171', 'score': 0.77}, {'connected_gene': 'GC17P007352', 'score': 0.44}]

Transcript ID	Transcript exon region	Coding exon region
ENST00000483039	[[7461608, 7461692], [7463162, 7463210], [7463365, 7463484], [7463666, 7463805], [7464040, 7464609]]	[[7463388, 7463484], [7463666, 7463805], [7464040, 7464150]]
ENST00000396542	[[7461609, 7461692], [7462384, 7462614], [7463167, 7463210], [7463365, 7463484], [7463666, 7463805], [7464040, 7464152]]	[[7462407, 7462614], [7463167, 7463210], [7463365, 7463484], [7463666, 7463805], [7464040, 7464150]]
ENST00000438470	[[7461616, 7461692], [7462384, 7462614], [7462940, 7463019], [7463365, 7463484], [7463666, 7463711]]	[[7462407, 7462614], [7462940, 7463019], [7463365, 7463484], [7463666, 7463711]]
ENST00000436057	[[7461618, 7461692], [7462384, 7462614], [7462940, 7463019], [7463162, 7463210], [7463365, 7463484], [7463666, 7463689]]	[[7462407, 7462614], [7462940, 7463019], [7463162, 7463210], [7463365, 7463484], [7463666, 7463689]]
ENST00000349228	[[7461792, 7462614], [7462940, 7463019], [7463365, 7463484], [7463666, 7463805], [7464040, 7464917]]	[[7462356, 7462614], [7462940, 7463019], [7463365, 7463484], [7463666, 7463805], [7464040, 7464150]]
ENST00000338784	[[7461913, 7462614], [7462940, 7463019], [7463162, 7463210], [7463365, 7463484], [7463666, 7463805], [7464040, 7464925]]	[[7462356, 7462614], [7462940, 7463019], [7463162, 7463210], [7463365, 7463484], [7463666, 7463805], [7464040, 7464150]]
ENST00000380535	[[7462075, 7462614], [7463167, 7463210], [7463365, 7463484], [7463666, 7463805], [7464040, 7464384]]	[[7462356, 7462614], [7463167, 7463210], [7463365, 7463484], [7463666, 7463805], [7464040, 7464150]]
ENST00000396545	[[7462103, 7462614], [7462940, 7463019], [7463162, 7463210], [7463365, 7463484], [7463666, 7463805], [7464040, 7464134], [7464315, 7464918]]	[[7462356, 7462614], [7462940, 7463019], [7463162, 7463210], [7463365, 7463484], [7463666, 7463805], [7464040, 7464134], [7464315, 7464322]]
NM_001198624	[[7461608, 7461692], [7462384, 7462614], [7463167, 7463210], [7463365, 7463484], [7463666, 7463805], [7464040, 7464925]]	[[7462407, 7462614], [7463167, 7463210], [7463365, 7463484], [7463666, 7463805], [7464040, 7464150]]
NR_073490	[[7461608, 7462614], [7463365, 7463484], [7463666, 7463805], [7464040, 7464925]]	None
NM_001198623	[[7461608, 7462614], [7463167, 7463210], [7463365, 7463484], [7463666, 7463805], [7464040, 7464925]]	[[7462356, 7462614], [7463167, 7463210], [7463365, 7463484], [7463666, 7463805], [7464040, 7464150]]
NM_001198622	[[7461608, 7462614], [7463164, 7463210], [7463365, 7463484], [7463666, 7463805], [7464040, 7464925]]	[[7462356, 7462614], [7463164, 7463210], [7463365, 7463484], [7463666, 7463805], [7464040, 7464150]]
NM_172087	[[7461608, 7462614], [7462940, 7463019], [7463365, 7463484], [7463666, 7463805], [7464040, 7464925]]	[[7462356, 7462614], [7462940, 7463019], [7463365, 7463484], [7463666, 7463805], [7464040, 7464150]]
NM_172088	[[7461608, 7462614], [7462940, 7463019], [7463162, 7463210], [7463365, 7463484], [7463666, 7463805], [7464040, 7464134], [7464315, 7464925]]	[[7462356, 7462614], [7462940, 7463019], [7463162, 7463210], [7463365, 7463484], [7463666, 7463805], [7464040, 7464134], [7464315, 7464322]]
NM_003808	[[7461608, 7462614], [7462940, 7463019], [7463162, 7463210], [7463365, 7463484], [7463666, 7463805], [7464040, 7464925]]	[[7462356, 7462614], [7462940, 7463019], [7463162, 7463210], [7463365, 7463484], [7463666, 7463805], [7464040, 7464150]]