PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000367434	[[193148174, 193150812], [193155148, 193155784]]	[[193149423, 193150692]]
NM_003783	[[193147859, 193150812], [193155148, 193155743]]	[[193149423, 193150692]]

Promoter

Chrom	Start	End	Description
chr1	193155704	193155715	CAGE_peak_2_at_B3GALT2_5end
chr1	193155729	193155757	CAGE_peak_1_at_B3GALT2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I193109	193109897	193116680	1.22	[{'connected_gene': 'B3GALT2', 'score': 9.59}, {'connected_gene': 'CDC73', 'score': 0.44}, {'connected_gene': 'GLRX2', 'score': 0.44}]
chr1	GH01I193183	193183131	193190482	1.97	[{'connected_gene': 'B3GALT2', 'score': 560.54}, {'connected_gene': 'CDC73', 'score': 10.72}, {'connected_gene': 'MIR1278', 'score': 10.57}, {'connected_gene': 'UCHL5', 'score': 4.22}, {'connected_gene': 'ENSG00000276735', 'score': 0.23}]
chr1	GH01I193210	193210097	193213078	1.05	[{'connected_gene': 'B3GALT2', 'score': 0.34}, {'connected_gene': 'ENSG00000276735', 'score': 0.31}, {'connected_gene': 'CDC73', 'score': 0.17}]
chr1	GH01I193257	193257370	193258002	0.35	[{'connected_gene': 'B3GALT2', 'score': 6.98}, {'connected_gene': 'RGS2', 'score': 1.28}, {'connected_gene': 'PIR40263', 'score': 0.77}, {'connected_gene': 'LINC01031', 'score': 0.25}]
chr1	GH01I193321	193321328	193323437	0.72	[{'connected_gene': 'B3GALT2', 'score': 8.52}, {'connected_gene': 'LINC01031', 'score': 0.37}, {'connected_gene': 'GC01M193470', 'score': 0.06}]
chr1	GH01I193355	193355060	193356475	0.85	[{'connected_gene': 'B3GALT2', 'score': 7.13}, {'connected_gene': 'LINC01031', 'score': 0.23}, {'connected_gene': 'GC01M193470', 'score': 0.07}]
chr1	GH01I193312	193312910	193314304	0.31	[{'connected_gene': 'B3GALT2', 'score': 8.63}, {'connected_gene': 'LINC01031', 'score': 0.44}, {'connected_gene': 'GC01M193470', 'score': 0.06}]
chr1	GH01I193314	193314963	193315275	0.23	[{'connected_gene': 'B3GALT2', 'score': 6.57}, {'connected_gene': 'LINC01031', 'score': 0.39}, {'connected_gene': 'GC01M193470', 'score': 0.06}]
chr1	GH01I193339	193339264	193341161	0.38	[{'connected_gene': 'B3GALT2', 'score': 8.58}, {'connected_gene': 'LINC01031', 'score': 0.28}, {'connected_gene': 'GC01M193470', 'score': 0.07}]
chr1	GH01I193308	193308020	193312531	0.73	[{'connected_gene': 'B3GALT2', 'score': 9.89}, {'connected_gene': 'ENSG00000272579', 'score': 4.82}, {'connected_gene': 'LINC01031', 'score': 0.44}, {'connected_gene': 'GC01M193470', 'score': 0.06}]
chr1	GH01I193334	193334021	193338389	0.59	[{'connected_gene': 'B3GALT2', 'score': 8.59}, {'connected_gene': 'LINC01031', 'score': 0.29}, {'connected_gene': 'GC01M193470', 'score': 0.07}]
chr1	GH01I193271	193271111	193271260	0.43	[{'connected_gene': 'B3GALT2', 'score': 6.15}, {'connected_gene': 'PIR40263', 'score': 0.37}, {'connected_gene': 'LINC01031', 'score': 0.29}]
chr1	GH01I193120	193120570	193124089	2.36	[{'connected_gene': 'CDC73', 'score': 550.77}, {'connected_gene': 'B3GALT2', 'score': 9.54}, {'connected_gene': 'LOC101929160', 'score': 0.44}]
chr1	GH01I193067	193067425	193068913	0.82	[{'connected_gene': 'CDC73', 'score': 11.19}, {'connected_gene': 'MIR1278', 'score': 10.59}, {'connected_gene': 'B3GALT2', 'score': 7.31}, {'connected_gene': 'UCHL5', 'score': 5.24}, {'connected_gene': 'TROVE2', 'score': 0.44}, {'connected_gene': 'ENSG00000272579', 'score': 0.34}]
chr1	GH01I193057	193057058	193061619	2.34	[{'connected_gene': 'UCHL5', 'score': 555.57}, {'connected_gene': 'TROVE2', 'score': 550.77}, {'connected_gene': 'SCARNA18B', 'score': 550.77}, {'connected_gene': 'ZNF101P2', 'score': 19.79}, {'connected_gene': 'ENSG00000231767', 'score': 9.97}, {'connected_gene': 'B3GALT2', 'score': 5.79}]
chr1	GH01I193103	193103637	193106468	2.04	[{'connected_gene': 'GLRX2', 'score': 550.77}, {'connected_gene': 'ZNF101P2', 'score': 10.5}, {'connected_gene': 'B3GALT2', 'score': 8.83}, {'connected_gene': 'UCHL5', 'score': 4.62}, {'connected_gene': 'ENSG00000272579', 'score': 0.39}]
chr1	GH01I193229	193229291	193229440	0.2	[{'connected_gene': 'ENSG00000276735', 'score': 0.44}, {'connected_gene': 'B3GALT2', 'score': 0.26}, {'connected_gene': 'CDC73', 'score': 0.14}]