PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000499666	[[100799492, 100803224], [100805218, 100805282], [100806698, 100806832], [100808452, 100808511], [100813156, 100813191], [100815111, 100815157], [100815491, 100815647]]	[[100803150, 100803224], [100805218, 100805282], [100806698, 100806832], [100808452, 100808511], [100813156, 100813191], [100815111, 100815120]]
ENST00000226522	[[100802363, 100803224], [100805218, 100805282], [100806698, 100806811], [100808452, 100808511], [100813156, 100813191], [100815111, 100815157], [100815491, 100815533]]	[[100803150, 100803224], [100805218, 100805282], [100806698, 100806811], [100808452, 100808511], [100813156, 100813191], [100815111, 100815120]]
ENST00000515100	[[100802649, 100803224], [100805218, 100805282], [100806698, 100806832], [100808452, 100808511], [100813156, 100813191], [100815491, 100815585]]	None
NM_021970	[[100799494, 100803224], [100805218, 100805282], [100806698, 100806832], [100808452, 100808511], [100813156, 100813191], [100815111, 100815157], [100815491, 100815703]]	[[100803150, 100803224], [100805218, 100805282], [100806698, 100806832], [100808452, 100808511], [100813156, 100813191], [100815111, 100815120]]
NM_001243736	[[100799494, 100803224], [100805218, 100805282], [100806698, 100806811], [100808452, 100808511], [100813156, 100813191], [100815111, 100815157], [100815491, 100815703]]	[[100803150, 100803224], [100805218, 100805282], [100806698, 100806811], [100808452, 100808511], [100813156, 100813191], [100815111, 100815120]]
NR_024170	[[100799494, 100803224], [100805218, 100805282], [100806698, 100806832], [100808452, 100808511], [100813156, 100813191], [100815491, 100815703]]	None

Promoter

Chrom	Start	End	Description
chr4	100815525	100815622	CAGE_peak_1_at_LAMTOR3_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr4	GH04I100348	100348082	100349563	1.07	[{'connected_gene': 'TRMT10A', 'score': 4.88}, {'connected_gene': 'LAMTOR3', 'score': 3.76}, {'connected_gene': 'GC04M100396', 'score': 0.25}, {'connected_gene': 'GC04P100245', 'score': 0.15}, {'connected_gene': 'PIR53160', 'score': 0.15}]
chr4	GH04I099829	99829998	99837548	0.46	[{'connected_gene': 'LAMTOR3', 'score': 10.57}, {'connected_gene': 'TRMT10A', 'score': 10.5}, {'connected_gene': 'MTTP', 'score': 10.5}, {'connected_gene': 'DAPP1', 'score': 8.18}, {'connected_gene': 'DNAJB14', 'score': 7.22}, {'connected_gene': 'ENSG00000279913', 'score': 0.39}, {'connected_gene': 'LOC285556', 'score': 0.39}]
chr4	GH04I099893	99893122	99895379	1.96	[{'connected_gene': 'LAMTOR3', 'score': 550.77}, {'connected_gene': 'DNAJB14', 'score': 23.39}, {'connected_gene': 'LOC256880', 'score': 12.13}, {'connected_gene': 'H2AFZ', 'score': 12.13}, {'connected_gene': 'MTTP', 'score': 9.98}, {'connected_gene': 'TRMT10A', 'score': 9.98}, {'connected_gene': 'DAPP1', 'score': 4.18}, {'connected_gene': 'ENSG00000279913', 'score': 0.23}]
chr4	GH04I100007	100007785	100008852	0.2	[{'connected_gene': 'LAMTOR3', 'score': 9.6}, {'connected_gene': 'LOC644721', 'score': 0.37}, {'connected_gene': 'DYNLL1P6', 'score': 0.29}, {'connected_gene': 'LOC256880', 'score': 0.22}]
chr4	GH04I099870	99870296	99872782	0.31	[{'connected_gene': 'LAMTOR3', 'score': 22.02}, {'connected_gene': 'DAPP1', 'score': 19.55}, {'connected_gene': 'TRMT10A', 'score': 10.34}, {'connected_gene': 'MTTP', 'score': 10.34}, {'connected_gene': 'DNAJB14', 'score': 9.1}, {'connected_gene': 'ENSG00000279913', 'score': 0.31}]
chr4	GH04I100086	100086684	100087849	0.38	[{'connected_gene': 'LAMTOR3', 'score': 7.15}, {'connected_gene': 'DYNLL1P6', 'score': 0.25}, {'connected_gene': 'LOC101929353', 'score': 0.15}, {'connected_gene': 'LOC256880', 'score': 0.12}]
chr4	GH04I100340	100340812	100341031	0.23	[{'connected_gene': 'LAMTOR3', 'score': 3.27}, {'connected_gene': 'GC04M100396', 'score': 0.22}, {'connected_gene': 'GC04P100245', 'score': 0.15}, {'connected_gene': 'PIR53160', 'score': 0.15}]
chr4	GH04I100095	100095801	100096400	0.96	[{'connected_gene': 'DNAJB14', 'score': 7.6}, {'connected_gene': 'LAMTOR3', 'score': 7.21}, {'connected_gene': 'DYNLL1P6', 'score': 0.23}, {'connected_gene': 'LOC101929353', 'score': 0.16}, {'connected_gene': 'LOC256880', 'score': 0.11}]
chr4	GH04I100093	100093064	100094309	1.16	[{'connected_gene': 'DNAJB14', 'score': 8.83}, {'connected_gene': 'LAMTOR3', 'score': 7.29}, {'connected_gene': 'DYNLL1P6', 'score': 0.23}, {'connected_gene': 'LOC101929353', 'score': 0.15}, {'connected_gene': 'LOC256880', 'score': 0.11}]
chr4	GH04I099862	99862869	99864527	0.71	[{'connected_gene': 'DNAJB14', 'score': 20.58}, {'connected_gene': 'DAPP1', 'score': 11.71}, {'connected_gene': 'LOC256880', 'score': 11.49}, {'connected_gene': 'H2AFZ', 'score': 11.49}, {'connected_gene': 'LAMTOR3', 'score': 9.89}, {'connected_gene': 'ENSG00000279913', 'score': 0.37}]
chr4	GH04I099855	99855201	99858200	1.05	[{'connected_gene': 'DNAJB14', 'score': 20.33}, {'connected_gene': 'DAPP1', 'score': 12.22}, {'connected_gene': 'LOC256880', 'score': 11.46}, {'connected_gene': 'H2AFZ', 'score': 11.46}, {'connected_gene': 'ENSG00000279913', 'score': 0.39}, {'connected_gene': 'LAMTOR3', 'score': 0.28}]
chr4	GH04I099944	99944875	99951427	2.11	[{'connected_gene': 'DNAJB14', 'score': 562.96}, {'connected_gene': 'LOC256880', 'score': 550.77}, {'connected_gene': 'H2AFZ', 'score': 550.77}, {'connected_gene': 'LAMTOR3', 'score': 10.29}, {'connected_gene': 'DAPP1', 'score': 6.41}]
chr4	GH04I099827	99827064	99828974	0.77	[{'connected_gene': 'DNAJB14', 'score': 10.68}, {'connected_gene': 'LOC256880', 'score': 10.68}, {'connected_gene': 'H2AFZ', 'score': 10.68}, {'connected_gene': 'MTTP', 'score': 10.28}, {'connected_gene': 'TRMT10A', 'score': 10.28}, {'connected_gene': 'LAMTOR3', 'score': 9.71}, {'connected_gene': 'DAPP1', 'score': 8.89}, {'connected_gene': 'LOC100507053', 'score': 5.45}, {'connected_gene': 'LOC285556', 'score': 0.44}, {'connected_gene': 'ENSG00000279913', 'score': 0.37}]
chr4	GH04I099917	99917860	99920089	0.38	[{'connected_gene': 'DNAJB14', 'score': 24.07}, {'connected_gene': 'LOC256880', 'score': 12.63}, {'connected_gene': 'H2AFZ', 'score': 12.63}, {'connected_gene': 'DAPP1', 'score': 7.97}, {'connected_gene': 'ENSG00000279098', 'score': 0.34}, {'connected_gene': 'LAMTOR3', 'score': 0.34}]
chr4	GH04I099824	99824442	99826151	0.58	[{'connected_gene': 'H2AFZ', 'score': 11.29}, {'connected_gene': 'LOC256880', 'score': 11.28}, {'connected_gene': 'DNAJB14', 'score': 11.28}, {'connected_gene': 'MTTP', 'score': 11.03}, {'connected_gene': 'TRMT10A', 'score': 11.03}, {'connected_gene': 'LAMTOR3', 'score': 9.2}, {'connected_gene': 'DAPP1', 'score': 8.93}, {'connected_gene': 'LOC285556', 'score': 0.77}, {'connected_gene': 'ENSG00000279913', 'score': 0.37}]
chr4	GH04I099819	99819836	99823026	1.3	[{'connected_gene': 'LOC285556', 'score': 550.77}, {'connected_gene': 'DNAJB14', 'score': 17.2}, {'connected_gene': 'TRMT10A', 'score': 13.12}, {'connected_gene': 'DAPP1', 'score': 12.77}, {'connected_gene': 'H2AFZ', 'score': 12.4}, {'connected_gene': 'MTTP', 'score': 11.03}, {'connected_gene': 'LOC256880', 'score': 10.59}, {'connected_gene': 'LAMTOR3', 'score': 10.53}, {'connected_gene': 'DDIT4L', 'score': 2.39}]
chr4	GH04I099845	99845009	99848258	1.49	[{'connected_gene': 'DAPP1', 'score': 22.91}, {'connected_gene': 'TRMT10A', 'score': 12.23}, {'connected_gene': 'MTTP', 'score': 10.58}, {'connected_gene': 'LAMTOR3', 'score': 10.0}, {'connected_gene': 'DNAJB14', 'score': 8.06}, {'connected_gene': 'ENSG00000279913', 'score': 0.77}]
chr4	GH04I099841	99841284	99841580	0.65	[{'connected_gene': 'DAPP1', 'score': 32.52}, {'connected_gene': 'TRMT10A', 'score': 11.75}, {'connected_gene': 'MTTP', 'score': 10.34}, {'connected_gene': 'LAMTOR3', 'score': 2.64}, {'connected_gene': 'ENSG00000279913', 'score': 0.77}, {'connected_gene': 'LOC285556', 'score': 0.37}]
chr4	GH04I099860	99860583	99860891	0.6	[{'connected_gene': 'DAPP1', 'score': 15.82}, {'connected_gene': 'TRMT10A', 'score': 12.8}, {'connected_gene': 'MTTP', 'score': 10.94}, {'connected_gene': 'LAMTOR3', 'score': 9.88}, {'connected_gene': 'ADH7', 'score': 5.31}, {'connected_gene': 'ENSG00000279913', 'score': 0.37}]
chr4	GH04I099814	99814898	99818958	2.23	[{'connected_gene': 'DAPP1', 'score': 564.34}, {'connected_gene': 'TRMT10A', 'score': 12.27}, {'connected_gene': 'MTTP', 'score': 10.72}, {'connected_gene': 'DNAJB14', 'score': 10.59}, {'connected_gene': 'LOC256880', 'score': 10.58}, {'connected_gene': 'H2AFZ', 'score': 10.58}, {'connected_gene': 'LAMTOR3', 'score': 6.71}, {'connected_gene': 'LOC285556', 'score': 0.44}]
chr4	GH04I099868	99868008	99868681	0.31	[{'connected_gene': 'DAPP1', 'score': 11.69}, {'connected_gene': 'DNAJB14', 'score': 11.5}, {'connected_gene': 'LOC256880', 'score': 11.5}, {'connected_gene': 'H2AFZ', 'score': 11.5}, {'connected_gene': 'ENSG00000279913', 'score': 0.34}, {'connected_gene': 'LAMTOR3', 'score': 0.31}]
chr4	GH04I099838	99838291	99839489	0.2	[{'connected_gene': 'DAPP1', 'score': 11.65}, {'connected_gene': 'MTTP', 'score': 10.34}, {'connected_gene': 'TRMT10A', 'score': 10.34}, {'connected_gene': 'LAMTOR3', 'score': 10.04}, {'connected_gene': 'DNAJB14', 'score': 9.5}, {'connected_gene': 'ENSG00000279913', 'score': 0.44}, {'connected_gene': 'LOC285556', 'score': 0.37}]
chr4	GH04I099864	99864567	99865892	0.31	[{'connected_gene': 'DAPP1', 'score': 11.71}, {'connected_gene': 'LOC256880', 'score': 11.5}, {'connected_gene': 'DNAJB14', 'score': 11.5}, {'connected_gene': 'H2AFZ', 'score': 11.49}, {'connected_gene': 'ENSG00000279913', 'score': 0.34}, {'connected_gene': 'LAMTOR3', 'score': 0.31}]
chr4	GH04I099851	99851015	99852013	0.99	[{'connected_gene': 'ENSG00000279913', 'score': 0.44}, {'connected_gene': 'DAPP1', 'score': 0.29}, {'connected_gene': 'LAMTOR3', 'score': 0.26}]