PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000238477	[[101978707, 101981118], [101983260, 101983419], [101983828, 101984224]]	[[101983350, 101983419], [101983828, 101984176]]
ENST00000476832	[[101979648, 101981118], [101983828, 101984238]]	[[101980215, 101981118], [101983828, 101984176]]
ENST00000319033	[[101979651, 101981118], [101983260, 101983329]]	[[101980215, 101981118], [101983260, 101983329]]
NR_024532	[[101978706, 101981118], [101983260, 101983419], [101983828, 101984246]]	None
NM_033087	[[101978706, 101981118], [101983828, 101984246]]	[[101980215, 101981118], [101983828, 101984176]]

Promoter

Chrom	Start	End	Description
chr9	101984184	101984237	CAGE_peak_1_at_ALG2_5end
chr9	101984253	101984274	CAGE_peak_2_at_ALG2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr9	GH09I099430	99430124	99431795	0.8	[{'connected_gene': 'ALG2', 'score': 4.49}, {'connected_gene': 'NR4A3', 'score': 3.45}, {'connected_gene': 'NAMA', 'score': 0.23}, {'connected_gene': 'ENSG00000234860', 'score': 0.15}]
chr9	GH09I099597	99597204	99597356	0.22	[{'connected_gene': 'NR4A3', 'score': 3.94}, {'connected_gene': 'ALG2', 'score': 3.09}, {'connected_gene': 'ENSG00000234860', 'score': 0.2}, {'connected_gene': 'GC09M099818', 'score': 0.07}, {'connected_gene': 'LOC101928438', 'score': 0.07}]
chr9	GH09I099257	99257443	99260858	1.5	[{'connected_gene': 'INVS', 'score': 13.18}, {'connected_gene': 'SEC61B', 'score': 11.84}, {'connected_gene': 'ALG2', 'score': 11.84}, {'connected_gene': 'STX17', 'score': 11.6}, {'connected_gene': 'KRT8P11', 'score': 4.86}, {'connected_gene': 'GC09P099237', 'score': 0.34}, {'connected_gene': 'RN7SKP225', 'score': 0.34}]
chr9	GH09I099167	99167879	99167968	0.38	[{'connected_gene': 'SEC61B', 'score': 11.25}, {'connected_gene': 'ALG2', 'score': 11.25}, {'connected_gene': 'TGFBR1', 'score': 4.98}, {'connected_gene': 'LOC105376174', 'score': 0.37}, {'connected_gene': 'GC09M099146', 'score': 0.34}, {'connected_gene': 'RNA5SP290', 'score': 0.34}]
chr9	GH09I099175	99175895	99177470	0.43	[{'connected_gene': 'SEC61B', 'score': 10.7}, {'connected_gene': 'ALG2', 'score': 10.7}, {'connected_gene': 'KRT8P11', 'score': 6.01}, {'connected_gene': 'TGFBR1', 'score': 4.75}, {'connected_gene': 'LOC105376174', 'score': 0.44}, {'connected_gene': 'GC09M099146', 'score': 0.29}, {'connected_gene': 'RNA5SP290', 'score': 0.29}]
chr9	GH09I099245	99244457	99244663	0.58	[{'connected_gene': 'SEC61B', 'score': 11.91}, {'connected_gene': 'ALG2', 'score': 11.91}, {'connected_gene': 'KRT8P11', 'score': 5.1}, {'connected_gene': 'GC09P099237', 'score': 0.44}, {'connected_gene': 'RN7SKP225', 'score': 0.28}]
chr9	GH09I099169	99169922	99171254	0.68	[{'connected_gene': 'SEC61B', 'score': 11.25}, {'connected_gene': 'ALG2', 'score': 11.25}, {'connected_gene': 'KRT8P11', 'score': 6.68}, {'connected_gene': 'LOC105376174', 'score': 0.39}, {'connected_gene': 'GC09M099146', 'score': 0.34}, {'connected_gene': 'RNA5SP290', 'score': 0.34}]
chr9	GH09I099173	99172985	99174553	0.84	[{'connected_gene': 'SEC61B', 'score': 11.27}, {'connected_gene': 'ALG2', 'score': 11.27}, {'connected_gene': 'KRT8P11', 'score': 6.0}, {'connected_gene': 'LOC105376174', 'score': 0.44}, {'connected_gene': 'GC09M099146', 'score': 0.31}, {'connected_gene': 'RNA5SP290', 'score': 0.31}]
chr9	GH09I099266	99266397	99267000	1.39	[{'connected_gene': 'SEC61B', 'score': 11.83}, {'connected_gene': 'ALG2', 'score': 11.83}, {'connected_gene': 'RN7SKP225', 'score': 0.37}, {'connected_gene': 'GC09P099237', 'score': 0.31}]
chr9	GH09I099244	99244999	99245245	1.09	[{'connected_gene': 'SEC61B', 'score': 11.91}, {'connected_gene': 'ALG2', 'score': 11.91}, {'connected_gene': 'GC09P099237', 'score': 0.44}, {'connected_gene': 'RN7SKP225', 'score': 0.28}]
chr9	GH09I099252	99252248	99254502	1.48	[{'connected_gene': 'SEC61B', 'score': 11.32}, {'connected_gene': 'ALG2', 'score': 11.32}, {'connected_gene': 'GC09P099237', 'score': 0.37}, {'connected_gene': 'RN7SKP225', 'score': 0.29}]
chr9	GH09I099172	99172819	99172968	0.83	[{'connected_gene': 'SEC61B', 'score': 11.27}, {'connected_gene': 'ALG2', 'score': 11.27}, {'connected_gene': 'LOC105376174', 'score': 0.39}, {'connected_gene': 'GC09M099146', 'score': 0.31}, {'connected_gene': 'RNA5SP290', 'score': 0.31}]
chr9	GH09I099159	99159739	99159908	0.38	[{'connected_gene': 'SEC61B', 'score': 11.26}, {'connected_gene': 'ALG2', 'score': 11.26}, {'connected_gene': 'GC09M099146', 'score': 0.39}, {'connected_gene': 'RNA5SP290', 'score': 0.39}, {'connected_gene': 'LOC105376174', 'score': 0.34}]
chr9	GH09I099183	99183808	99185430	1.04	[{'connected_gene': 'RN7SL794P', 'score': 550.77}, {'connected_gene': 'LOC105376174', 'score': 550.77}, {'connected_gene': 'SEC61B', 'score': 12.17}, {'connected_gene': 'ALG2', 'score': 12.17}, {'connected_gene': 'KRT8P11', 'score': 6.28}]
chr9	GH09I099181	99181203	99182301	1.29	[{'connected_gene': 'LOC105376174', 'score': 550.77}, {'connected_gene': 'ALG2', 'score': 13.06}, {'connected_gene': 'STX17', 'score': 12.16}, {'connected_gene': 'SEC61B', 'score': 11.92}, {'connected_gene': 'GC09M099146', 'score': 0.28}, {'connected_gene': 'RNA5SP290', 'score': 0.28}]
chr9	GH09I099234	99234210	99237914	1.18	[{'connected_gene': 'GC09P099237', 'score': 550.77}, {'connected_gene': 'KRT8P11', 'score': 8.67}, {'connected_gene': 'ALG2', 'score': 4.99}, {'connected_gene': 'SEC61B', 'score': 3.89}, {'connected_gene': 'GC09M099229', 'score': 0.44}]
chr9	GH09I099239	99239451	99239752	0.77	[{'connected_gene': 'GC09P099237', 'score': 550.77}, {'connected_gene': 'KRT8P11', 'score': 5.12}, {'connected_gene': 'ALG2', 'score': 3.2}, {'connected_gene': 'RN7SKP225', 'score': 0.26}]
chr9	GH09I099220	99220600	99224082	2.25	[{'connected_gene': 'PIR31591', 'score': 550.77}, {'connected_gene': 'SEC61B', 'score': 550.77}, {'connected_gene': 'GC09M099222', 'score': 550.77}, {'connected_gene': 'ALG2', 'score': 550.77}, {'connected_gene': 'KRT8P11', 'score': 8.54}, {'connected_gene': 'GC09M099229', 'score': 0.44}]