PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000279550	[[10851682, 10852253], [10853852, 10853952], [10854558, 10854733], [10856649, 10856747], [10865809, 10865932], [10868292, 10868382], [10870686, 10870720], [10871678, 10871742], [10875448, 10875906]]	[[10853886, 10853952], [10854558, 10854733], [10856649, 10856747], [10865809, 10865932], [10868292, 10868382], [10870686, 10870720], [10871678, 10871742], [10875448, 10875710]]
ENST00000228251	[[10851811, 10852253], [10853852, 10853952], [10854558, 10854733], [10856649, 10856747], [10862506, 10862713], [10865809, 10865932], [10868292, 10868382], [10870686, 10870720], [10871678, 10871742], [10875448, 10875911]]	[[10853886, 10853952], [10854558, 10854733], [10856649, 10856747], [10862506, 10862713], [10865809, 10865932], [10868292, 10868382], [10870686, 10870720], [10871678, 10871742], [10875448, 10875710]]
ENST00000540447	[[10851825, 10852253], [10853852, 10853952], [10854558, 10856747], [10862506, 10865932], [10868292, 10868382], [10870686, 10870720], [10871678, 10871742], [10875448, 10875510]]	None
ENST00000540975	[[10851915, 10852253], [10853852, 10853952], [10854558, 10854733], [10855010, 10855074]]	None
ENST00000546164	[[10852025, 10852253], [10853852, 10853952], [10854558, 10854733], [10856658, 10856747], [10862506, 10862719]]	None
ENST00000536823	[[10852076, 10852253], [10853852, 10853952], [10854558, 10854733], [10856649, 10857037]]	None
ENST00000366286	[[10852208, 10852253], [10853852, 10853952], [10854558, 10854733], [10854857, 10855241]]	None
ENST00000542002	[[10853851, 10853952], [10854558, 10854733], [10856649, 10856747], [10865809, 10865932], [10868292, 10868747]]	None
ENST00000366290	[[10853852, 10853952], [10854558, 10854970]]	None
ENST00000542641	[[10853872, 10853952], [10854558, 10854733], [10856649, 10856747], [10865809, 10865932], [10868292, 10868382], [10870611, 10870714]]	None
ENST00000541351	[[10853873, 10853952], [10854558, 10854733], [10856121, 10856218], [10856649, 10856747], [10862506, 10862713], [10863252, 10863313]]	[[10854685, 10854733], [10856121, 10856218], [10856649, 10856747], [10862506, 10862713], [10863252, 10863313]]
ENST00000544504	[[10854608, 10854733], [10856649, 10856747], [10862506, 10862713], [10863132, 10863285]]	None
ENST00000539204	[[10856621, 10856747], [10862506, 10862713], [10865809, 10865932], [10868292, 10868382], [10870686, 10870720], [10870960, 10871029]]	None
ENST00000544622	[[10862949, 10863387], [10865809, 10865932], [10868292, 10868382], [10870686, 10870720]]	None
ENST00000546298	[[10865827, 10865932], [10868292, 10868382], [10870686, 10870720], [10871678, 10871742], [10873389, 10873531], [10874516, 10874645]]	None
ENST00000544501	[[10868293, 10868382], [10870311, 10870376], [10870686, 10870713]]	None
ENST00000536107	[[10870406, 10870720], [10871678, 10871742], [10875448, 10875508]]	None
ENST00000540747	[[10870715, 10870720], [10871678, 10871742], [10873389, 10873531], [10874658, 10874995]]	None
NM_003651	[[10851675, 10852253], [10853852, 10853952], [10854558, 10854733], [10856649, 10856747], [10862506, 10862713], [10865809, 10865932], [10868292, 10868382], [10870686, 10870720], [10871678, 10871742], [10875448, 10875953]]	[[10853886, 10853952], [10854558, 10854733], [10856649, 10856747], [10862506, 10862713], [10865809, 10865932], [10868292, 10868382], [10870686, 10870720], [10871678, 10871742], [10875448, 10875710]]
NM_001145426	[[10851675, 10852253], [10853852, 10853952], [10854558, 10854733], [10856649, 10856747], [10865809, 10865932], [10868292, 10868382], [10870686, 10870720], [10871678, 10871742], [10875448, 10875953]]	[[10853886, 10853952], [10854558, 10854733], [10856649, 10856747], [10865809, 10865932], [10868292, 10868382], [10870686, 10870720], [10871678, 10871742], [10875448, 10875710]]

Promoter

Chrom	Start	End	Description
chr12	10854595	10854628	CAGE_peak_7_at_CSDA_5end
chr12	10854646	10854658	CAGE_peak_24_at_CSDA_5end
chr12	10856697	10856712	CAGE_peak_12_at_CSDA_5end
chr12	10856713	10856723	CAGE_peak_23_at_CSDA_5end
chr12	10856739	10856746	CAGE_peak_36_at_CSDA_5end
chr12	10856751	10856757	CAGE_peak_39_at_CSDA_5end
chr12	10865870	10865888	CAGE_peak_6_at_CSDA_5end
chr12	10865908	10865915	CAGE_peak_37_at_CSDA_5end
chr12	10865922	10865934	CAGE_peak_15_at_CSDA_5end
chr12	10870927	10870966	CAGE_peak_5_at_CSDA_5end
chr12	10870989	10871013	CAGE_peak_11_at_CSDA_5end
chr12	10871020	10871032	CAGE_peak_26_at_CSDA_5end
chr12	10871049	10871064	CAGE_peak_19_at_CSDA_5end
chr12	10871068	10871079	CAGE_peak_25_at_CSDA_5end
chr12	10875351	10875422	CAGE_peak_4_at_CSDA_5end
chr12	10875481	10875504	CAGE_peak_14_at_CSDA_5end
chr12	10875548	10875563	CAGE_peak_13_at_CSDA_5end
chr12	10875612	10875631	CAGE_peak_9_at_CSDA_5end
chr12	10875636	10875638	CAGE_peak_38_at_CSDA_5end
chr12	10875658	10875708	CAGE_peak_2_at_CSDA_5end
chr12	10875713	10875719	CAGE_peak_21_at_CSDA_5end
chr12	10875733	10875752	CAGE_peak_8_at_CSDA_5end
chr12	10875768	10875808	CAGE_peak_3_at_CSDA_5end
chr12	10875823	10875827	CAGE_peak_22_at_CSDA_5end
chr12	10875831	10876025	CAGE_peak_1_at_CSDA_5end
chr12	10876282	10876288	CAGE_peak_29_at_CSDA_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr12	GH12I010707	10707053	10708146	0.2	[{'connected_gene': 'YBX3', 'score': 11.93}, {'connected_gene': 'STYK1', 'score': 11.48}, {'connected_gene': 'GABARAPL1', 'score': 10.45}, {'connected_gene': 'ENSG00000255958', 'score': 10.45}, {'connected_gene': 'MAGOHB', 'score': 10.42}, {'connected_gene': 'KLRC1', 'score': 9.13}, {'connected_gene': 'LOC105369660', 'score': 0.37}, {'connected_gene': 'GC12P010619', 'score': 0.17}]
chr12	GH12I010715	10715682	10724506	2.28	[{'connected_gene': 'YBX3', 'score': 561.22}, {'connected_gene': 'KLRA1P', 'score': 56.72}, {'connected_gene': 'TAS2R20', 'score': 33.59}, {'connected_gene': 'TAS2R31', 'score': 26.41}, {'connected_gene': 'TAS2R43', 'score': 25.46}, {'connected_gene': 'MAGOHB', 'score': 22.54}, {'connected_gene': 'TAS2R14', 'score': 13.81}, {'connected_gene': 'TAS2R50', 'score': 13.38}, {'connected_gene': 'TAS2R15P', 'score': 12.67}, {'connected_gene': 'TAS2R10', 'score': 12.6}, {'connected_gene': 'TAS2R64P', 'score': 12.58}, {'connected_gene': 'ENSG00000256682', 'score': 12.01}, {'connected_gene': 'ENSG00000256981', 'score': 11.94}, {'connected_gene': 'TAS2R19', 'score': 11.21}, {'connected_gene': 'STYK1', 'score': 10.86}, {'connected_gene': 'PRH2', 'score': 10.14}, {'connected_gene': 'ENSG00000255958', 'score': 10.05}, {'connected_gene': 'GABARAPL1', 'score': 10.05}, {'connected_gene': 'LOC105369660', 'score': 0.77}, {'connected_gene': 'GC12P010619', 'score': 0.15}]
chr12	GH12I010708	10708442	10710163	0.4	[{'connected_gene': 'STYK1', 'score': 11.48}, {'connected_gene': 'GABARAPL1', 'score': 10.45}, {'connected_gene': 'ENSG00000255958', 'score': 10.45}, {'connected_gene': 'YBX3', 'score': 10.45}, {'connected_gene': 'MAGOHB', 'score': 10.41}, {'connected_gene': 'KLRC1', 'score': 9.13}, {'connected_gene': 'LOC105369660', 'score': 0.39}, {'connected_gene': 'GC12P010619', 'score': 0.17}]
chr12	GH12I010705	10705027	10706973	0.31	[{'connected_gene': 'STYK1', 'score': 11.48}, {'connected_gene': 'ENSG00000255958', 'score': 10.45}, {'connected_gene': 'GABARAPL1', 'score': 10.45}, {'connected_gene': 'YBX3', 'score': 10.42}, {'connected_gene': 'MAGOHB', 'score': 10.42}, {'connected_gene': 'KLRC1', 'score': 9.13}, {'connected_gene': 'LOC105369660', 'score': 0.37}, {'connected_gene': 'GC12P010619', 'score': 0.17}]
chr12	GH12I010701	10701104	10701839	0.31	[{'connected_gene': 'STYK1', 'score': 11.5}, {'connected_gene': 'ENSG00000255958', 'score': 10.45}, {'connected_gene': 'GABARAPL1', 'score': 10.45}, {'connected_gene': 'MAGOHB', 'score': 10.42}, {'connected_gene': 'YBX3', 'score': 9.72}, {'connected_gene': 'KLRC1', 'score': 9.13}, {'connected_gene': 'LOC105369660', 'score': 0.34}, {'connected_gene': 'GC12P010619', 'score': 0.18}]
chr12	GH12I010289	10289157	10289354	0.61	[{'connected_gene': 'KLRD1', 'score': 18.11}, {'connected_gene': 'KLRF1', 'score': 15.08}, {'connected_gene': 'KLRK1', 'score': 11.38}, {'connected_gene': 'ENSG00000255958', 'score': 10.63}, {'connected_gene': 'GABARAPL1', 'score': 10.62}, {'connected_gene': 'KLRC4-KLRK1', 'score': 9.55}, {'connected_gene': 'KLRC4', 'score': 9.14}, {'connected_gene': 'KLRC3', 'score': 7.37}, {'connected_gene': 'KLRC1', 'score': 4.32}, {'connected_gene': 'KLRC2', 'score': 2.67}, {'connected_gene': 'YBX3', 'score': 1.64}, {'connected_gene': 'CLEC2B', 'score': 1.5}, {'connected_gene': 'CLEC1B', 'score': 1.28}, {'connected_gene': 'LOC105369656', 'score': 0.77}]
chr12	GH12I010740	10740282	10740431	0.59	[{'connected_gene': 'KLRC1', 'score': 6.13}, {'connected_gene': 'LINC02366', 'score': 0.44}, {'connected_gene': 'YBX3', 'score': 0.37}]
chr12	GH12I011715	11715225	11716015	0.31	[{'connected_gene': 'ETV6', 'score': 11.23}, {'connected_gene': 'DDX55P1', 'score': 4.44}, {'connected_gene': 'YBX3', 'score': 4.17}, {'connected_gene': 'GC12M012107', 'score': 0.22}, {'connected_gene': 'PIR53480', 'score': 0.21}]
chr12	GH12I010749	10749108	10750831	1.49	[{'connected_gene': 'LINC02366', 'score': 550.77}, {'connected_gene': 'KLRA1P', 'score': 15.33}, {'connected_gene': 'TAS2R43', 'score': 14.05}, {'connected_gene': 'ENSG00000256981', 'score': 11.24}, {'connected_gene': 'TAS2R50', 'score': 10.65}, {'connected_gene': 'LINC01252', 'score': 5.76}, {'connected_gene': 'TAS2R14', 'score': 4.35}, {'connected_gene': 'YBX3', 'score': 0.31}]
chr12	GH12I010300	10300252	10302179	0.2	[{'connected_gene': 'ENSG00000255958', 'score': 11.07}, {'connected_gene': 'GABARAPL1', 'score': 11.07}, {'connected_gene': 'KLRC1', 'score': 10.63}, {'connected_gene': 'KLRD1', 'score': 6.72}, {'connected_gene': 'YBX3', 'score': 4.17}, {'connected_gene': 'LOC105369656', 'score': 0.44}, {'connected_gene': 'ENSG00000256288', 'score': 0.28}]