PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000251296	[[18434239, 18434692], [18554391, 18554504], [18618359, 18618481], [18661385, 18661504], [18688608, 18688724], [18691716, 18692191], [18702803, 18702889], [18703293, 18703486], [18703886, 18703925], [18704749, 18704976]]	[[18434622, 18434692], [18554391, 18554504], [18618359, 18618481], [18661385, 18661504], [18688608, 18688724], [18691716, 18692191], [18702803, 18702889], [18703293, 18703486], [18703886, 18703925], [18704749, 18704820]]
ENST00000412684	[[18605338, 18605378], [18618359, 18618481], [18661385, 18661504], [18688608, 18688724], [18691716, 18692191], [18702803, 18702861]]	[[18605338, 18605378], [18618359, 18618481], [18661385, 18661504], [18688608, 18688724], [18691716, 18692191], [18702803, 18702861]]
ENST00000497331	[[18687860, 18688724], [18691716, 18692191], [18702803, 18702889], [18703293, 18703486], [18703886, 18703925], [18704749, 18704977]]	None
ENST00000473951	[[18702450, 18702889], [18703293, 18703414]]	None
NM_032880	[[18434239, 18434692], [18554391, 18554504], [18618359, 18618481], [18661385, 18661504], [18688608, 18688724], [18691716, 18692191], [18702803, 18702889], [18703293, 18703486], [18703886, 18703925], [18704749, 18704977]]	[[18434622, 18434692], [18554391, 18554504], [18618359, 18618481], [18661385, 18661504], [18688608, 18688724], [18691716, 18692191], [18702803, 18702889], [18703293, 18703486], [18703886, 18703925], [18704749, 18704820]]

Promoter

Chrom	Start	End	Description
chr1	18433873	18433888	CAGE_peak_8_at_IGSF21_5end
chr1	18433983	18434000	CAGE_peak_6_at_IGSF21_5end
chr1	18434245	18434256	CAGE_peak_2_at_IGSF21_5end
chr1	18434257	18434308	CAGE_peak_1_at_IGSF21_5end
chr1	18434493	18434527	CAGE_peak_3_at_IGSF21_5end
chr1	18434615	18434642	CAGE_peak_4_at_IGSF21_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I017636	17636415	17637578	0.46	[{'connected_gene': 'IGSF21', 'score': 11.02}, {'connected_gene': 'ARHGEF10L', 'score': 10.45}, {'connected_gene': 'ACTL8', 'score': 0.18}, {'connected_gene': 'GC01P017551', 'score': 0.17}]
chr1	GH01I017637	17637700	17641586	0.54	[{'connected_gene': 'IGSF21', 'score': 11.02}, {'connected_gene': 'ARHGEF10L', 'score': 10.45}, {'connected_gene': 'ACTL8', 'score': 0.19}, {'connected_gene': 'GC01P017551', 'score': 0.17}]
chr1	GH01I017635	17635557	17636320	1.11	[{'connected_gene': 'IGSF21', 'score': 11.02}, {'connected_gene': 'ARHGEF10L', 'score': 10.45}, {'connected_gene': 'PADI4', 'score': 1.14}, {'connected_gene': 'ACTL8', 'score': 0.18}, {'connected_gene': 'GC01P017551', 'score': 0.18}]
chr1	GH01I018224	18224070	18227129	0.31	[{'connected_gene': 'IGSF21', 'score': 5.22}, {'connected_gene': 'IGSF21-AS1', 'score': 0.25}, {'connected_gene': 'PIR34886', 'score': 0.21}, {'connected_gene': 'GC01P018288', 'score': 0.21}]
chr1	GH01I018228	18228133	18230938	0.2	[{'connected_gene': 'IGSF21', 'score': 5.41}, {'connected_gene': 'IGSF21-AS1', 'score': 0.23}, {'connected_gene': 'PIR34886', 'score': 0.22}, {'connected_gene': 'GC01P018288', 'score': 0.22}]
chr1	GH01I018262	18262827	18262976	0.2	[{'connected_gene': 'IGSF21', 'score': 10.38}, {'connected_gene': 'PIR34886', 'score': 0.34}, {'connected_gene': 'GC01P018288', 'score': 0.34}, {'connected_gene': 'IGSF21-AS1', 'score': 0.18}]
chr1	GH01I018256	18256407	18256556	0.92	[{'connected_gene': 'IGSF21', 'score': 10.26}, {'connected_gene': 'PIR34886', 'score': 0.29}, {'connected_gene': 'GC01P018288', 'score': 0.29}, {'connected_gene': 'IGSF21-AS1', 'score': 0.18}]
chr1	GH01I018160	18160600	18161200	0.31	[{'connected_gene': 'IGSF21', 'score': 11.74}, {'connected_gene': 'GC01P018158', 'score': 0.77}, {'connected_gene': 'IGSF21-AS1', 'score': 0.37}]
chr1	GH01I018108	18107567	18107716	0.62	[{'connected_gene': 'IGSF21', 'score': 550.77}, {'connected_gene': 'ENSG00000280222', 'score': 550.77}, {'connected_gene': 'GC01M018090', 'score': 0.28}, {'connected_gene': 'LINC01654', 'score': 0.26}]
chr1	GH01I018107	18107749	18107808	0.79	[{'connected_gene': 'IGSF21', 'score': 550.77}, {'connected_gene': 'ENSG00000280222', 'score': 550.77}, {'connected_gene': 'GC01M018090', 'score': 0.28}]
chr1	GH01I018122	18122168	18122544	0.22	[{'connected_gene': 'IGSF21-AS1', 'score': 11.06}, {'connected_gene': 'IGSF21', 'score': 3.85}, {'connected_gene': 'ENSG00000280222', 'score': 0.39}, {'connected_gene': 'GC01M018090', 'score': 0.34}]
chr1	GH01I018232	18232522	18234383	0.38	[{'connected_gene': 'IGSF21-AS1', 'score': 0.23}, {'connected_gene': 'PIR34886', 'score': 0.23}, {'connected_gene': 'GC01P018288', 'score': 0.23}, {'connected_gene': 'IGSF21', 'score': 0.13}]
chr1	GH01I018175	18175667	18176799	0.75	[{'connected_gene': 'IGSF21-AS1', 'score': 0.77}, {'connected_gene': 'GC01P018158', 'score': 0.37}, {'connected_gene': 'IGSF21', 'score': 0.2}]
chr1	GH01I018090	18090588	18092492	0.46	[{'connected_gene': 'LINC01654', 'score': 5.37}, {'connected_gene': 'IGSF21', 'score': 0.37}, {'connected_gene': 'GC01M018090', 'score': 0.23}]
chr1	GH01I018301	18301852	18303700	0.6	[{'connected_gene': 'PIR34886', 'score': 0.37}, {'connected_gene': 'GC01P018288', 'score': 0.37}, {'connected_gene': 'GC01P018324', 'score': 0.34}, {'connected_gene': 'IGSF21', 'score': 0.08}]
chr1	GH01I018297	18297865	18299794	0.84	[{'connected_gene': 'PIR34886', 'score': 0.39}, {'connected_gene': 'GC01P018288', 'score': 0.39}, {'connected_gene': 'GC01P018324', 'score': 0.31}, {'connected_gene': 'IGSF21', 'score': 0.08}]
chr1	GH01I018341	18341184	18341468	0.54	[{'connected_gene': 'GC01P018324', 'score': 0.37}, {'connected_gene': 'GC01P018374', 'score': 0.29}, {'connected_gene': 'IGSF21', 'score': 0.07}]
chr1	GH01I018299	18299827	18299976	0.69	[{'connected_gene': 'PIR34886', 'score': 0.39}, {'connected_gene': 'GC01P018288', 'score': 0.39}, {'connected_gene': 'GC01P018324', 'score': 0.34}, {'connected_gene': 'IGSF21', 'score': 0.08}]
chr1	GH01I018300	18300172	18301439	0.43	[{'connected_gene': 'PIR34886', 'score': 0.39}, {'connected_gene': 'GC01P018288', 'score': 0.39}, {'connected_gene': 'GC01P018324', 'score': 0.34}, {'connected_gene': 'IGSF21', 'score': 0.08}]
chr1	GH01I018293	18293885	18297259	0.72	[{'connected_gene': 'PIR34886', 'score': 0.44}, {'connected_gene': 'GC01P018288', 'score': 0.44}, {'connected_gene': 'GC01P018324', 'score': 0.31}, {'connected_gene': 'IGSF21', 'score': 0.09}]
chr1	GH01I018316	18316927	18316996	0.74	[{'connected_gene': 'GC01P018324', 'score': 0.44}, {'connected_gene': 'PIR34886', 'score': 0.31}, {'connected_gene': 'GC01P018288', 'score': 0.31}, {'connected_gene': 'IGSF21', 'score': 0.08}]
chr1	GH01I018234	18234867	18235036	0.59	[{'connected_gene': 'PIR34886', 'score': 0.23}, {'connected_gene': 'GC01P018288', 'score': 0.23}, {'connected_gene': 'IGSF21-AS1', 'score': 0.22}, {'connected_gene': 'IGSF21', 'score': 0.13}]
chr1	GH01I018236	18236935	18239758	0.56	[{'connected_gene': 'PIR34886', 'score': 0.25}, {'connected_gene': 'GC01P018288', 'score': 0.25}, {'connected_gene': 'IGSF21-AS1', 'score': 0.22}, {'connected_gene': 'IGSF21', 'score': 0.12}]
chr1	GH01I018283	18283487	18283656	0.84	[{'connected_gene': 'PIR34886', 'score': 0.77}, {'connected_gene': 'GC01P018288', 'score': 0.77}, {'connected_gene': 'IGSF21-AS1', 'score': 0.15}, {'connected_gene': 'IGSF21', 'score': 0.1}]
chr1	GH01I018241	18241179	18244949	0.6	[{'connected_gene': 'PIR34886', 'score': 0.26}, {'connected_gene': 'GC01P018288', 'score': 0.26}, {'connected_gene': 'IGSF21-AS1', 'score': 0.21}, {'connected_gene': 'IGSF21', 'score': 0.12}]
chr1	GH01I018244	18244956	18252162	0.6	[{'connected_gene': 'PIR34886', 'score': 0.28}, {'connected_gene': 'GC01P018288', 'score': 0.28}, {'connected_gene': 'IGSF21-AS1', 'score': 0.2}, {'connected_gene': 'IGSF21', 'score': 0.11}]