PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000496253	[[103332298, 103332500], [103334648, 103334793]]	None
ENST00000258436	[[103332298, 103335666], [103340158, 103340368], [103343303, 103343433], [103347483, 103347527], [103348780, 103348868], [103353104, 103353313]]	[[103334878, 103335666], [103340158, 103340368], [103343303, 103343433], [103347483, 103347527], [103348780, 103348868], [103353104, 103353269]]
ENST00000438943	[[103333496, 103335666], [103340158, 103340368], [103343303, 103343433], [103347483, 103347527], [103348482, 103348597], [103348780, 103348868], [103353104, 103353337]]	[[103348571, 103348597], [103348780, 103348868], [103353104, 103353269]]
ENST00000437075	[[103334029, 103335666], [103340158, 103340368], [103343303, 103343433], [103347483, 103347527], [103348482, 103348597], [103348780, 103348851], [103353104, 103353337]]	[[103348536, 103348597], [103348780, 103348851], [103353104, 103353269]]
ENST00000411991	[[103335272, 103335666], [103340158, 103340337], [103343303, 103343433], [103347483, 103347527], [103348482, 103348597], [103348780, 103348868], [103353104, 103353337]]	[[103348571, 103348597], [103348780, 103348868], [103353104, 103353269]]
ENST00000428085	[[103335462, 103335666], [103340158, 103340337], [103343303, 103343433], [103347483, 103347527], [103348780, 103348799]]	[[103340290, 103340337], [103343303, 103343433], [103347483, 103347527], [103348780, 103348799]]
ENST00000421966	[[103343376, 103343433], [103347483, 103347527], [103348780, 103348868], [103352988, 103353347]]	[[103353068, 103353269]]
ENST00000462099	[[103348744, 103348885], [103353104, 103353298]]	None
NM_001322080	[[103331084, 103335666], [103340158, 103340368], [103343303, 103343433], [103347483, 103347527], [103348780, 103348868], [103352988, 103353347]]	[[103334878, 103335666], [103340158, 103340368], [103343303, 103343433], [103347483, 103347527], [103348780, 103348850]]
NM_001322081	[[103331084, 103335666], [103340158, 103340368], [103343303, 103343433], [103347483, 103347527], [103348780, 103348885], [103353104, 103353347]]	[[103334878, 103335666], [103340158, 103340368], [103343303, 103343433], [103347483, 103347527], [103348780, 103348850]]
NR_136173	[[103331084, 103335666], [103340158, 103340337], [103343303, 103343433], [103347483, 103347527], [103348482, 103348597], [103348780, 103348868], [103353104, 103353347]]	None
NM_032718	[[103331084, 103335666], [103340158, 103340368], [103343303, 103343433], [103347483, 103347527], [103348780, 103348868], [103353104, 103353347]]	[[103334878, 103335666], [103340158, 103340368], [103343303, 103343433], [103347483, 103347527], [103348780, 103348868], [103353104, 103353269]]
NR_136174	[[103331084, 103332500], [103334648, 103335666], [103340158, 103340337], [103343303, 103343433], [103347483, 103347527], [103348780, 103348868], [103353104, 103353347]]	None

Promoter

Chrom	Start	End	Description
chr2	103353277	103353365	CAGE_peak_1_at_MFSD9_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr2	GH02I102636	102636349	102637358	0.52	[{'connected_gene': 'IL18R1', 'score': 4.57}, {'connected_gene': 'SLC9A2', 'score': 0.37}, {'connected_gene': 'MFSD9', 'score': 0.15}, {'connected_gene': 'GC02P101903', 'score': 0.02}]
chr2	GH02I102735	102735397	102737749	1.99	[{'connected_gene': 'MFSD9', 'score': 550.77}, {'connected_gene': 'TMEM182', 'score': 550.77}, {'connected_gene': 'SLC9A2', 'score': 0.13}, {'connected_gene': 'GC02P101903', 'score': 0.03}]
chr2	GH02I102770	102770369	102773994	0.51	[{'connected_gene': 'MFSD9', 'score': 25.88}, {'connected_gene': 'TMEM182', 'score': 0.28}, {'connected_gene': 'LINC01796', 'score': 0.13}, {'connected_gene': 'GC02P101903', 'score': 0.03}]
chr2	GH02I102782	102782769	102784712	0.31	[{'connected_gene': 'MFSD9', 'score': 39.28}, {'connected_gene': 'TMEM182', 'score': 0.25}, {'connected_gene': 'LINC01796', 'score': 0.14}, {'connected_gene': 'GC02P101903', 'score': 0.03}]
chr2	GH02I102808	102808844	102811028	0.43	[{'connected_gene': 'MFSD9', 'score': 38.43}, {'connected_gene': 'TMEM182', 'score': 0.19}, {'connected_gene': 'LINC01796', 'score': 0.17}, {'connected_gene': 'GC02P101903', 'score': 0.02}]
chr2	GH02I102766	102766330	102768534	0.49	[{'connected_gene': 'MFSD9', 'score': 71.94}, {'connected_gene': 'TMEM182', 'score': 0.29}, {'connected_gene': 'LINC01796', 'score': 0.13}, {'connected_gene': 'GC02P101903', 'score': 0.03}]
chr2	GH02I102812	102812777	102816729	0.38	[{'connected_gene': 'MFSD9', 'score': 38.42}, {'connected_gene': 'TMEM182', 'score': 0.18}, {'connected_gene': 'LINC01796', 'score': 0.18}, {'connected_gene': 'GC02P101903', 'score': 0.03}]
chr2	GH02I102787	102787805	102789114	0.54	[{'connected_gene': 'MFSD9', 'score': 17.48}, {'connected_gene': 'TMEM182', 'score': 0.23}, {'connected_gene': 'LINC01796', 'score': 0.14}, {'connected_gene': 'GC02P101903', 'score': 0.02}]
chr2	GH02I102754	102754493	102756082	0.38	[{'connected_gene': 'MFSD9', 'score': 26.0}, {'connected_gene': 'TMEM182', 'score': 0.37}, {'connected_gene': 'LINC01796', 'score': 0.11}, {'connected_gene': 'GC02P101903', 'score': 0.03}]
chr2	GH02I102801	102801460	102803513	1	[{'connected_gene': 'MFSD9', 'score': 17.92}, {'connected_gene': 'TMEM182', 'score': 0.2}, {'connected_gene': 'LINC01796', 'score': 0.16}, {'connected_gene': 'GC02P101903', 'score': 0.03}]
chr2	GH02I103669	103669000	103670334	0.91	[{'connected_gene': 'MFSD9', 'score': 4.6}, {'connected_gene': 'GC02P103623', 'score': 0.25}, {'connected_gene': 'LOC105373520', 'score': 0.1}]
chr2	GH02I102663	102663295	102665274	1.33	[{'connected_gene': 'SLC9A2', 'score': 14.03}, {'connected_gene': 'IL1RL2', 'score': 3.79}, {'connected_gene': 'MFSD9', 'score': 0.19}, {'connected_gene': 'GC02P101903', 'score': 0.03}]
chr2	GH02I102660	102660067	102660526	0.65	[{'connected_gene': 'SLC9A2', 'score': 10.97}, {'connected_gene': 'MFSD9', 'score': 0.18}, {'connected_gene': 'GC02P101903', 'score': 0.03}]
chr2	GH02I102633	102633573	102633624	0.2	[{'connected_gene': 'SLC9A2', 'score': 0.39}, {'connected_gene': 'MFSD9', 'score': 0.15}, {'connected_gene': 'GC02P101903', 'score': 0.02}]
chr2	GH02I102637	102637462	102637524	0.31	[{'connected_gene': 'SLC9A2', 'score': 0.37}, {'connected_gene': 'MFSD9', 'score': 0.15}, {'connected_gene': 'GC02P101903', 'score': 0.02}]
chr2	GH02I102632	102632502	102632651	0.46	[{'connected_gene': 'SLC9A2', 'score': 0.39}, {'connected_gene': 'MFSD9', 'score': 0.15}, {'connected_gene': 'GC02P101903', 'score': 0.03}]
chr2	GH02I102654	102654202	102654351	0.57	[{'connected_gene': 'SLC9A2', 'score': 11.54}, {'connected_gene': 'MFSD9', 'score': 0.18}, {'connected_gene': 'GC02P101903', 'score': 0.03}]
chr2	GH02I102618	102618507	102621225	1.87	[{'connected_gene': 'SLC9A2', 'score': 569.54}, {'connected_gene': 'SLC9A4', 'score': 10.46}, {'connected_gene': 'ENSG00000236525', 'score': 5.12}, {'connected_gene': 'IL18RAP', 'score': 4.26}, {'connected_gene': 'MFSD9', 'score': 0.13}, {'connected_gene': 'GC02P101903', 'score': 0.03}]
chr2	GH02I102708	102708982	102709111	0.56	[{'connected_gene': 'SLC9A2', 'score': 10.96}, {'connected_gene': 'SLC9A4', 'score': 10.68}, {'connected_gene': 'MFSD9', 'score': 0.31}, {'connected_gene': 'GC02P101903', 'score': 0.03}]
chr2	GH02I102698	102698562	102698611	0.56	[{'connected_gene': 'SLC9A2', 'score': 11.34}, {'connected_gene': 'SLC9A4', 'score': 10.46}, {'connected_gene': 'MFSD9', 'score': 0.28}, {'connected_gene': 'GC02P101903', 'score': 0.03}]
chr2	GH02I102621	102621762	102621911	0.49	[{'connected_gene': 'SLC9A4', 'score': 10.46}, {'connected_gene': 'SLC9A2', 'score': 0.77}, {'connected_gene': 'MFSD9', 'score': 0.13}, {'connected_gene': 'GC02P101903', 'score': 0.03}]
chr2	GH02I102761	102761292	102762977	0.9	[{'connected_gene': 'TMEM182', 'score': 550.31}, {'connected_gene': 'MFSD9', 'score': 58.55}, {'connected_gene': 'LINC01796', 'score': 0.12}, {'connected_gene': 'GC02P101903', 'score': 0.03}]
chr2	GH02I101960	101960007	101963600	1.28	[{'connected_gene': 'LINC01127', 'score': 550.77}, {'connected_gene': 'IL1R2', 'score': 27.13}, {'connected_gene': 'MFSD9', 'score': 4.88}, {'connected_gene': 'GC02P101903', 'score': 0.22}]
chr2	GH02I102146	102146694	102149856	0.62	[{'connected_gene': 'ENSG00000226925', 'score': 11.23}, {'connected_gene': 'IL1RL2', 'score': 7.44}, {'connected_gene': 'MFSD9', 'score': 7.22}, {'connected_gene': 'IL1R1', 'score': 6.41}, {'connected_gene': 'GC02M102141', 'score': 0.44}, {'connected_gene': 'PIR60869', 'score': 0.44}, {'connected_gene': 'GC02P101903', 'score': 0.07}]
chr2	GH02I102154	102154234	102156936	1.34	[{'connected_gene': 'ENSG00000226925', 'score': 11.88}, {'connected_gene': 'IL1RL2', 'score': 11.36}, {'connected_gene': 'IL1R1', 'score': 6.35}, {'connected_gene': 'MFSD9', 'score': 6.14}, {'connected_gene': 'IL18R1', 'score': 5.93}, {'connected_gene': 'IL1RL1', 'score': 5.23}, {'connected_gene': 'GC02M102141', 'score': 0.39}, {'connected_gene': 'PIR60869', 'score': 0.39}, {'connected_gene': 'GC02P101903', 'score': 0.07}]
chr2	GH02I102121	102120954	102123321	1.29	[{'connected_gene': 'ENSG00000226925', 'score': 10.57}, {'connected_gene': 'MFSD9', 'score': 7.51}, {'connected_gene': 'IL1R1', 'score': 6.67}, {'connected_gene': 'GC02M102141', 'score': 0.37}, {'connected_gene': 'PIR60869', 'score': 0.37}, {'connected_gene': 'GC02P101903', 'score': 0.08}]
chr2	GH02I102120	102120761	102120910	0.69	[{'connected_gene': 'ENSG00000226925', 'score': 10.56}, {'connected_gene': 'MFSD9', 'score': 7.36}, {'connected_gene': 'IL1R1', 'score': 6.92}, {'connected_gene': 'GC02M102141', 'score': 0.34}, {'connected_gene': 'PIR60869', 'score': 0.34}, {'connected_gene': 'GC02P101903', 'score': 0.08}]
chr2	GH02I102150	102150001	102150200	0.4	[{'connected_gene': 'ENSG00000226925', 'score': 11.23}, {'connected_gene': 'MFSD9', 'score': 6.55}, {'connected_gene': 'GC02M102141', 'score': 0.44}, {'connected_gene': 'PIR60869', 'score': 0.44}, {'connected_gene': 'IL1R1', 'score': 0.17}, {'connected_gene': 'GC02P101903', 'score': 0.07}]
chr2	GH02I101971	101971592	101974199	0.89	[{'connected_gene': 'ENSG00000226925', 'score': 9.49}, {'connected_gene': 'IL1R2', 'score': 5.95}, {'connected_gene': 'MFSD9', 'score': 4.4}, {'connected_gene': 'LINC01127', 'score': 0.39}, {'connected_gene': 'GC02P101903', 'score': 0.2}]
chr2	GH02I102126	102126461	102129557	1.14	[{'connected_gene': 'ENSG00000226925', 'score': 10.68}, {'connected_gene': 'IL1R1', 'score': 10.59}, {'connected_gene': 'MFSD9', 'score': 7.37}, {'connected_gene': 'IL1RL2', 'score': 3.44}, {'connected_gene': 'MAP4K4', 'score': 3.35}, {'connected_gene': 'GC02M102141', 'score': 0.39}, {'connected_gene': 'PIR60869', 'score': 0.39}, {'connected_gene': 'GC02P101903', 'score': 0.07}]
chr2	GH02I102151	102151212	102152328	0.2	[{'connected_gene': 'ENSG00000226925', 'score': 11.06}, {'connected_gene': 'IL1R1', 'score': 7.48}, {'connected_gene': 'MFSD9', 'score': 6.57}, {'connected_gene': 'GC02M102141', 'score': 0.39}, {'connected_gene': 'PIR60869', 'score': 0.39}, {'connected_gene': 'GC02P101903', 'score': 0.07}]