PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000446765	[[32092877, 32093561], [32094916, 32095021], [32108454, 32108531], [32117060, 32117203], [32142994, 32143106], [32145866, 32145979], [32157135, 32157204], [32168370, 32168452], [32248490, 32248543], [32248745, 32248826]]	None
ENST00000452582	[[32236954, 32237121], [32248490, 32248543], [32248745, 32248877], [32254662, 32254805], [32264347, 32264395], [32264489, 32264561], [32264801, 32264823]]	None
ENST00000414013	[[32236975, 32237121], [32248490, 32248543], [32254662, 32254805], [32264347, 32264395], [32264489, 32264561], [32264801, 32264862]]	None
ENST00000430665	[[32246008, 32246168], [32248490, 32248543], [32254662, 32254805], [32264347, 32264395], [32264489, 32264561], [32264801, 32264849]]	None
ENST00000422413	[[32246088, 32246168], [32248490, 32248543], [32248745, 32248877], [32254662, 32254805], [32264347, 32264395], [32264489, 32264561], [32264801, 32264874]]	None
ENST00000342166	[[32248960, 32249325], [32254662, 32254805], [32264347, 32264395], [32264489, 32264561], [32264801, 32264881]]	[[32249252, 32249325], [32254662, 32254805], [32264347, 32264395], [32264489, 32264525]]
ENST00000295066	[[32249170, 32249325], [32254662, 32254805], [32264347, 32264395], [32264489, 32264561], [32264661, 32264874]]	[[32249252, 32249325], [32254662, 32254805], [32264347, 32264395], [32264489, 32264525]]
NM_001321210	[[32236717, 32237121], [32248490, 32248543], [32254662, 32254805], [32264347, 32264395], [32264489, 32264561], [32264801, 32264904]]	[[32248539, 32248543], [32254662, 32254805], [32264347, 32264395], [32264489, 32264525]]
NM_032574	[[32248960, 32249325], [32254662, 32254805], [32264347, 32264395], [32264489, 32264561], [32264661, 32264904]]	[[32249252, 32249325], [32254662, 32254805], [32264347, 32264395], [32264489, 32264525]]
NM_001321209	[[32248960, 32249325], [32254662, 32254805], [32264347, 32264395], [32264489, 32264561], [32264801, 32264904]]	[[32249252, 32249325], [32254662, 32254805], [32264347, 32264395], [32264489, 32264525]]
NR_135585	[[32248960, 32249325], [32254662, 32254798], [32264347, 32264395], [32264489, 32264561], [32264801, 32264904]]	None
NR_135587	[[32248960, 32249325], [32264347, 32264395], [32264489, 32264561], [32264801, 32264904]]	None

Promoter

Chrom	Start	End	Description
chr2	32264850	32264901	CAGE_peak_1_at_DPY30_5end,CAGE_peak_1_at_MEMO1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr2	GH02I031446	31446506	31447520	0.2	[{'connected_gene': 'DPY30', 'score': 7.44}, {'connected_gene': 'XDH', 'score': 6.22}, {'connected_gene': 'GC02P031438', 'score': 0.44}, {'connected_gene': 'ENSG00000228563', 'score': 0.18}]
chr2	GH02I031660	31660375	31661622	0.38	[{'connected_gene': 'DPY30', 'score': 5.38}, {'connected_gene': 'GC02M031658', 'score': 0.44}, {'connected_gene': 'GC02P031652', 'score': 0.44}, {'connected_gene': 'SRD5A2', 'score': 0.28}]
chr2	GH02I032038	32038743	32040924	2.03	[{'connected_gene': 'DPY30', 'score': 550.77}, {'connected_gene': 'SLC30A6', 'score': 32.11}, {'connected_gene': 'BIRC6', 'score': 12.53}, {'connected_gene': 'TTC27', 'score': 10.0}, {'connected_gene': 'NLRC4', 'score': 5.46}, {'connected_gene': 'ENSG00000271228', 'score': 0.31}]
chr2	GH02I031992	31992804	31993944	0.31	[{'connected_gene': 'DPY30', 'score': 10.89}, {'connected_gene': 'SLC30A6', 'score': 6.11}, {'connected_gene': 'MEMO1', 'score': 0.37}, {'connected_gene': 'GC02P031938', 'score': 0.23}]
chr2	GH02I032004	32004799	32006703	0.75	[{'connected_gene': 'DPY30', 'score': 10.92}, {'connected_gene': 'SLC30A6', 'score': 9.01}, {'connected_gene': 'MEMO1', 'score': 0.44}, {'connected_gene': 'GC02P031938', 'score': 0.2}]
chr2	GH02I031996	31996447	31998515	0.49	[{'connected_gene': 'DPY30', 'score': 10.91}, {'connected_gene': 'SLC30A6', 'score': 6.19}, {'connected_gene': 'MEMO1', 'score': 0.39}, {'connected_gene': 'GC02P031938', 'score': 0.22}]
chr2	GH02I032072	32072795	32075214	0.54	[{'connected_gene': 'DPY30', 'score': 12.0}, {'connected_gene': 'MEMO1', 'score': 10.93}, {'connected_gene': 'SLC30A6', 'score': 10.09}, {'connected_gene': 'ENSG00000272716', 'score': 6.29}, {'connected_gene': 'XDH', 'score': 4.4}, {'connected_gene': 'SPAST', 'score': 0.39}, {'connected_gene': 'GC02M032061', 'score': 0.26}]
chr2	GH02I032007	32007201	32007400	0.92	[{'connected_gene': 'DPY30', 'score': 10.92}, {'connected_gene': 'MEMO1', 'score': 0.77}, {'connected_gene': 'GC02P031938', 'score': 0.2}]
chr2	GH02I031998	31998607	31999718	0.49	[{'connected_gene': 'DPY30', 'score': 10.86}, {'connected_gene': 'MEMO1', 'score': 0.39}, {'connected_gene': 'GC02P031938', 'score': 0.21}]
chr2	GH02I031980	31980101	31981729	1.13	[{'connected_gene': 'XDH', 'score': 5.06}, {'connected_gene': 'MEMO1', 'score': 0.29}, {'connected_gene': 'GC02P031938', 'score': 0.26}, {'connected_gene': 'DPY30', 'score': 0.22}]
chr2	GH02I031983	31983556	31984691	0.52	[{'connected_gene': 'BIRC6', 'score': 19.83}, {'connected_gene': 'DDX50P1', 'score': 14.8}, {'connected_gene': 'TTC27', 'score': 11.13}, {'connected_gene': 'SLC30A6', 'score': 10.99}, {'connected_gene': 'MEMO1', 'score': 0.31}, {'connected_gene': 'GC02P031938', 'score': 0.25}, {'connected_gene': 'DPY30', 'score': 0.22}]
chr2	GH02I032135	32135012	32136694	0.88	[{'connected_gene': 'SLC30A6', 'score': 18.96}, {'connected_gene': 'RNU6-647P', 'score': 10.71}, {'connected_gene': 'DPY30', 'score': 10.66}, {'connected_gene': 'MEMO1', 'score': 9.99}, {'connected_gene': 'GC02P032156', 'score': 0.34}, {'connected_gene': 'GC02M032061', 'score': 0.34}, {'connected_gene': 'SPAST', 'score': 0.19}]
chr2	GH02I032133	32133200	32133401	0.38	[{'connected_gene': 'SLC30A6', 'score': 11.72}, {'connected_gene': 'RNU6-647P', 'score': 10.7}, {'connected_gene': 'DPY30', 'score': 10.66}, {'connected_gene': 'MEMO1', 'score': 9.99}, {'connected_gene': 'GC02M032061', 'score': 0.37}, {'connected_gene': 'GC02P032156', 'score': 0.34}, {'connected_gene': 'SPAST', 'score': 0.2}]
chr2	GH02I032627	32627014	32629001	2.02	[{'connected_gene': 'TTC27', 'score': 560.89}, {'connected_gene': 'BIRC6', 'score': 22.1}, {'connected_gene': 'DDX50P1', 'score': 14.62}, {'connected_gene': 'SLC30A6', 'score': 14.04}, {'connected_gene': 'DPY30', 'score': 4.59}, {'connected_gene': 'GC02M032591', 'score': 0.28}]
chr2	GH02I031956	31956401	31959171	0.78	[{'connected_gene': 'MEMO1', 'score': 11.23}, {'connected_gene': 'DPY30', 'score': 10.62}, {'connected_gene': 'SLC30A6', 'score': 8.58}, {'connected_gene': 'GC02P031938', 'score': 0.37}]
chr2	GH02I031960	31960001	31960200	0.4	[{'connected_gene': 'MEMO1', 'score': 11.23}, {'connected_gene': 'DPY30', 'score': 10.62}, {'connected_gene': 'SLC30A6', 'score': 4.24}, {'connected_gene': 'GC02P031938', 'score': 0.34}]
chr2	GH02I031988	31987552	31987701	0.83	[{'connected_gene': 'MEMO1', 'score': 11.89}, {'connected_gene': 'DPY30', 'score': 10.5}, {'connected_gene': 'SLC30A6', 'score': 10.06}, {'connected_gene': 'GC02P031938', 'score': 0.25}]
chr2	GH02I031963	31963001	31963200	0.79	[{'connected_gene': 'MEMO1', 'score': 11.19}, {'connected_gene': 'DPY30', 'score': 11.12}, {'connected_gene': 'SLC30A6', 'score': 5.79}, {'connected_gene': 'GC02P031938', 'score': 0.34}]
chr2	GH02I031877	31877132	31877281	0.65	[{'connected_gene': 'MEMO1', 'score': 10.79}, {'connected_gene': 'DPY30', 'score': 10.65}, {'connected_gene': 'GC02P031895', 'score': 0.37}, {'connected_gene': 'ENSG00000273165', 'score': 0.34}]
chr2	GH02I031945	31945601	31945800	0.96	[{'connected_gene': 'MEMO1', 'score': 10.87}, {'connected_gene': 'GC02P031938', 'score': 0.44}, {'connected_gene': 'DPY30', 'score': 0.16}]
chr2	GH02I031987	31987028	31987121	0.8	[{'connected_gene': 'MEMO1', 'score': 0.34}, {'connected_gene': 'GC02P031938', 'score': 0.25}, {'connected_gene': 'DPY30', 'score': 0.23}]
chr2	GH02I031966	31966512	31966661	0.43	[{'connected_gene': 'MEMO1', 'score': 11.21}, {'connected_gene': 'DPY30', 'score': 11.13}, {'connected_gene': 'GC02P031938', 'score': 0.31}]
chr2	GH02I032008	32008542	32012383	2.32	[{'connected_gene': 'MEMO1', 'score': 550.77}, {'connected_gene': 'SLC30A6', 'score': 16.46}, {'connected_gene': 'DPY30', 'score': 0.31}, {'connected_gene': 'GC02P031938', 'score': 0.19}]
chr2	GH02I032591	32591401	32592978	1.05	[{'connected_gene': 'GC02M032591', 'score': 550.77}, {'connected_gene': 'DPY30', 'score': 4.47}, {'connected_gene': 'GC02P032585', 'score': 0.44}, {'connected_gene': 'BIRC6', 'score': 0.07}]
chr2	GH02I031934	31934756	31935856	0.2	[{'connected_gene': 'GC02P031936', 'score': 550.77}, {'connected_gene': 'GC02P031937', 'score': 550.77}, {'connected_gene': 'GC02M031896', 'score': 0.37}, {'connected_gene': 'MEMO1', 'score': 0.18}, {'connected_gene': 'DPY30', 'score': 0.15}]
chr2	GH02I031933	31933422	31934721	0.31	[{'connected_gene': 'GC02P031936', 'score': 0.77}, {'connected_gene': 'GC02P031937', 'score': 0.77}, {'connected_gene': 'GC02M031896', 'score': 0.37}, {'connected_gene': 'MEMO1', 'score': 0.18}, {'connected_gene': 'DPY30', 'score': 0.14}]
chr2	GH02I031974	31974999	31976494	0.2	[{'connected_gene': 'GC02P031938', 'score': 0.28}, {'connected_gene': 'MEMO1', 'score': 0.28}, {'connected_gene': 'DPY30', 'score': 0.21}]