PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000369466	[[117602924, 117602996], [117603076, 117603179], [117605008, 117605095], [117616282, 117616349], [117617491, 117618481], [117618801, 117618916], [117619262, 117619445], [117620537, 117620665], [117622189, 117622271], [117624449, 117624569], [117626639, 117626790], [117629038, 117629144], [117631422, 117631604], [117632676, 117632830], [117633153, 117633245], [117633949, 117634032], [117634438, 117634572], [117635352, 117635523], [117637930, 117637989], [117638770, 117638921], [117639972, 117640055], [117641454, 117641529], [117644001, 117650075]]	[[117602968, 117602996], [117603076, 117603179], [117605008, 117605095], [117616282, 117616349], [117617491, 117618481], [117618801, 117618916], [117619262, 117619445], [117620537, 117620665], [117622189, 117622271], [117624449, 117624569], [117626639, 117626790], [117629038, 117629144], [117631422, 117631604], [117632676, 117632830], [117633153, 117633245], [117633949, 117634032], [117634438, 117634572], [117635352, 117635523], [117637930, 117637989], [117638770, 117638921], [117639972, 117640055], [117641454, 117641529], [117644001, 117644146]]
ENST00000470935	[[117602983, 117602996], [117603076, 117603183], [117605008, 117605095], [117616282, 117616349], [117617491, 117618066]]	None
ENST00000469638	[[117617916, 117618481], [117618801, 117619011]]	None
ENST00000492682	[[117635408, 117635523], [117637930, 117637989], [117638770, 117638921], [117640827, 117640860], [117641454, 117641529], [117644001, 117644371]]	None
ENST00000463696	[[117637946, 117637989], [117638770, 117638921], [117639972, 117640055], [117640827, 117640860], [117641454, 117641529], [117644001, 117644278]]	None
ENST00000427271	[[117638792, 117638921], [117639972, 117640055], [117641454, 117641529], [117644001, 117644184], [117644815, 117644984]]	[[117638792, 117638921], [117639972, 117640055], [117641454, 117641529], [117644001, 117644146]]
ENST00000480701	[[117640867, 117641529], [117644001, 117644322]]	None
NM_003594	[[117602948, 117602996], [117603076, 117603179], [117605008, 117605095], [117616282, 117616349], [117617491, 117618481], [117618801, 117618916], [117619262, 117619445], [117620537, 117620665], [117622189, 117622271], [117624449, 117624569], [117626639, 117626790], [117629038, 117629144], [117631422, 117631604], [117632676, 117632830], [117633153, 117633245], [117633949, 117634032], [117634438, 117634572], [117635352, 117635523], [117637930, 117637989], [117638770, 117638921], [117639972, 117640055], [117641454, 117641529], [117644001, 117645492]]	[[117602968, 117602996], [117603076, 117603179], [117605008, 117605095], [117616282, 117616349], [117617491, 117618481], [117618801, 117618916], [117619262, 117619445], [117620537, 117620665], [117622189, 117622271], [117624449, 117624569], [117626639, 117626790], [117629038, 117629144], [117631422, 117631604], [117632676, 117632830], [117633153, 117633245], [117633949, 117634032], [117634438, 117634572], [117635352, 117635523], [117637930, 117637989], [117638770, 117638921], [117639972, 117640055], [117641454, 117641529], [117644001, 117644146]]

Promoter

Chrom	Start	End	Description
chr1	117602932	117602973	CAGE_peak_1_at_TTF2_5end
chr1	117602977	117602984	CAGE_peak_3_at_TTF2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I116569	116569182	116572275	2.54	[{'connected_gene': 'CD58', 'score': 559.08}, {'connected_gene': 'MAN1A2', 'score': 11.52}, {'connected_gene': 'TRIM45', 'score': 9.93}, {'connected_gene': 'ATP1A1-AS1', 'score': 5.58}, {'connected_gene': 'ATP1A1', 'score': 4.84}, {'connected_gene': 'IGSF3', 'score': 4.41}, {'connected_gene': 'CD101', 'score': 3.64}, {'connected_gene': 'TTF2', 'score': 1.71}, {'connected_gene': 'MIR548AC', 'score': 0.39}]
chr1	GH01I116815	116815663	116817063	1.15	[{'connected_gene': 'CD2', 'score': 3.73}, {'connected_gene': 'TTF2', 'score': 2.21}, {'connected_gene': 'FTH1P22', 'score': 0.26}, {'connected_gene': 'LOC105378927', 'score': 0.2}]
chr1	GH01I116752	116752924	116773029	2.16	[{'connected_gene': 'CD2', 'score': 557.88}, {'connected_gene': 'ATP1A1', 'score': 2.82}, {'connected_gene': 'TTF2', 'score': 1.93}, {'connected_gene': 'FTH1P22', 'score': 0.39}]
chr1	GH01I117076	117076404	117078223	0.98	[{'connected_gene': 'TTF2', 'score': 12.8}, {'connected_gene': 'TRIM45', 'score': 11.09}, {'connected_gene': 'CD101', 'score': 3.4}, {'connected_gene': 'MIR942', 'score': 0.37}]
chr1	GH01I116736	116736774	116741337	1.53	[{'connected_gene': 'TTF2', 'score': 12.79}, {'connected_gene': 'LOC101929099', 'score': 11.2}, {'connected_gene': 'CD101', 'score': 9.08}, {'connected_gene': 'IGSF3', 'score': 4.71}, {'connected_gene': 'ATP1A1', 'score': 4.34}, {'connected_gene': 'CD2', 'score': 4.17}, {'connected_gene': 'NEFHP1', 'score': 0.77}, {'connected_gene': 'GC01M116740', 'score': 0.77}, {'connected_gene': 'GAPDHP64', 'score': 0.34}]
chr1	GH01I117058	117058483	117062843	2.07	[{'connected_gene': 'TTF2', 'score': 577.42}, {'connected_gene': 'LOC101929099', 'score': 556.39}, {'connected_gene': 'WDR3', 'score': 36.07}, {'connected_gene': 'GDAP2', 'score': 26.56}, {'connected_gene': 'MAN1A2', 'score': 11.41}, {'connected_gene': 'ATP1A1-AS1', 'score': 10.46}, {'connected_gene': 'CD101', 'score': 4.92}, {'connected_gene': 'MIR942', 'score': 0.29}]
chr1	GH01I117114	117114004	117115201	0.49	[{'connected_gene': 'TRIM45', 'score': 5.67}, {'connected_gene': 'TTF2', 'score': 5.01}, {'connected_gene': 'PIR35685', 'score': 0.77}, {'connected_gene': 'MIR942', 'score': 0.37}]
chr1	GH01I117120	117120674	117123582	2.02	[{'connected_gene': 'TRIM45', 'score': 560.67}, {'connected_gene': 'WDR3', 'score': 49.57}, {'connected_gene': 'ATP1A1-AS1', 'score': 18.19}, {'connected_gene': 'VTCN1', 'score': 16.37}, {'connected_gene': 'ENSG00000212266', 'score': 8.63}, {'connected_gene': 'TTF2', 'score': 4.98}, {'connected_gene': 'PIR35685', 'score': 0.77}]
chr1	GH01I117096	117096621	117098260	0.62	[{'connected_gene': 'TRIM45', 'score': 11.14}, {'connected_gene': 'MIR942', 'score': 0.77}, {'connected_gene': 'PIR35685', 'score': 0.34}, {'connected_gene': 'TTF2', 'score': 0.28}]
chr1	GH01I116981	116981164	116984191	0.92	[{'connected_gene': 'PTGFRN', 'score': 8.52}, {'connected_gene': 'TTF2', 'score': 5.34}, {'connected_gene': 'CD101', 'score': 0.37}, {'connected_gene': 'RNA5SP55', 'score': 0.34}]
chr1	GH01I116721	116721877	116723208	0.69	[{'connected_gene': 'C1orf137', 'score': 11.23}, {'connected_gene': 'TTF2', 'score': 11.08}, {'connected_gene': 'LOC101929099', 'score': 11.08}, {'connected_gene': 'CD2', 'score': 10.86}, {'connected_gene': 'IGSF3', 'score': 10.82}, {'connected_gene': 'MIR320B1', 'score': 10.82}, {'connected_gene': 'CD101', 'score': 9.97}, {'connected_gene': 'GAPDHP64', 'score': 0.44}, {'connected_gene': 'GC01M116740', 'score': 0.34}]
chr1	GH01I116586	116586803	116587108	0.89	[{'connected_gene': 'IGSF3', 'score': 10.88}, {'connected_gene': 'MIR320B1', 'score': 10.88}, {'connected_gene': 'CD58', 'score': 4.67}, {'connected_gene': 'TTF2', 'score': 1.97}, {'connected_gene': 'LOC105378924', 'score': 0.77}]
chr1	GH01I116877	116877161	116880253	1.54	[{'connected_gene': 'MAN1A2', 'score': 41.25}, {'connected_gene': 'ATP1A1-AS1', 'score': 39.48}, {'connected_gene': 'PTGFRN', 'score': 11.39}, {'connected_gene': 'CD2', 'score': 10.77}, {'connected_gene': 'CD101', 'score': 10.29}, {'connected_gene': 'TRIM45', 'score': 9.97}, {'connected_gene': 'TTF2', 'score': 1.63}, {'connected_gene': 'LOC105378927', 'score': 0.77}, {'connected_gene': 'FTH1P22', 'score': 0.15}]
chr1	GH01I116122	116122598	116123483	0.9	[{'connected_gene': 'LOC105378918', 'score': 550.77}, {'connected_gene': 'ENSG00000237993', 'score': 9.61}, {'connected_gene': 'TTF2', 'score': 5.48}, {'connected_gene': 'GC01P116110', 'score': 0.39}, {'connected_gene': 'MAB21L3', 'score': 0.25}]
chr1	GH01I117128	117128401	117129000	0.56	[{'connected_gene': 'MIR942', 'score': 10.37}, {'connected_gene': 'TTF2', 'score': 10.28}, {'connected_gene': 'MAN1A2', 'score': 9.43}, {'connected_gene': 'VTCN1', 'score': 8.28}, {'connected_gene': 'TRIM45', 'score': 0.44}, {'connected_gene': 'RPS15AP9', 'score': 0.44}]
chr1	GH01I117070	117070419	117070568	0.46	[{'connected_gene': 'MIR942', 'score': 11.47}, {'connected_gene': 'TRIM45', 'score': 11.18}, {'connected_gene': 'TTF2', 'score': 0.39}]
chr1	GH01I117071	117070179	117070328	0.57	[{'connected_gene': 'MIR942', 'score': 11.47}, {'connected_gene': 'TRIM45', 'score': 11.18}, {'connected_gene': 'TTF2', 'score': 0.44}]
chr1	GH01I117091	117091875	117095488	1.08	[{'connected_gene': 'MIR942', 'score': 550.77}, {'connected_gene': 'TRIM45', 'score': 7.48}, {'connected_gene': 'TTF2', 'score': 6.82}]
chr1	GH01I117069	117069457	117070024	0.46	[{'connected_gene': 'MIR942', 'score': 11.47}, {'connected_gene': 'TRIM45', 'score': 11.18}, {'connected_gene': 'TTF2', 'score': 9.94}]
chr1	GH01I116432	116432435	116434566	1.05	[{'connected_gene': 'ENSG00000230381', 'score': 550.77}, {'connected_gene': 'TTF2', 'score': 4.18}, {'connected_gene': 'GC01P116453', 'score': 0.37}, {'connected_gene': 'LINC01762', 'score': 0.25}]