PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000375500	[[29577989, 29578159], [29580771, 29580935], [29581447, 29581606], [29599038, 29599117], [29599918, 29600161]]	[[29578046, 29578159], [29580771, 29580935], [29581447, 29581606], [29599038, 29599117], [29599918, 29599988]]
ENST00000494304	[[29580853, 29580935], [29581447, 29581606], [29599038, 29599117], [29606238, 29606377], [29607079, 29607257]]	[[29580853, 29580935], [29581447, 29581606], [29599038, 29599117], [29606238, 29606239]]
NM_032517	[[29577989, 29578159], [29580771, 29580935], [29581447, 29581606], [29599038, 29599117], [29599918, 29600158]]	[[29578046, 29578159], [29580771, 29580935], [29581447, 29581606], [29599038, 29599117], [29599918, 29599988]]

Promoter

Chrom	Start	End	Description
chr10	29577974	29578011	CAGE_peak_1_at_LYZL1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr10	GH10I029252	29252753	29258314	1.43	[{'connected_gene': 'LYZL1', 'score': 12.21}, {'connected_gene': 'C10orf126', 'score': 9.52}, {'connected_gene': 'RNU6-270P', 'score': 9.13}, {'connected_gene': 'LOC105376472', 'score': 0.31}]
chr10	GH10I029084	29084336	29086462	0.38	[{'connected_gene': 'LYZL1', 'score': 10.61}, {'connected_gene': 'C10orf126', 'score': 10.27}, {'connected_gene': 'RNU6-270P', 'score': 10.0}, {'connected_gene': 'GC10P029100', 'score': 0.37}, {'connected_gene': 'GC10M029997', 'score': 0.18}]
chr10	GH10I029067	29067989	29070994	0.43	[{'connected_gene': 'LYZL1', 'score': 10.82}, {'connected_gene': 'C10orf126', 'score': 9.85}, {'connected_gene': 'GC10P029100', 'score': 0.29}, {'connected_gene': 'GC10M029997', 'score': 0.2}]
chr10	GH10I029317	29317773	29319963	1.12	[{'connected_gene': 'LYZL1', 'score': 11.47}, {'connected_gene': 'CKS1BP2', 'score': 10.18}, {'connected_gene': 'LOC105376473', 'score': 0.22}]
chr10	GH10I029242	29241412	29241433	0.31	[{'connected_gene': 'LYZL1', 'score': 10.95}, {'connected_gene': 'RNU6-270P', 'score': 10.1}, {'connected_gene': 'C10orf126', 'score': 9.17}, {'connected_gene': 'LOC105376472', 'score': 0.39}]
chr10	GH10I029241	29241118	29241208	0.39	[{'connected_gene': 'LYZL1', 'score': 10.95}, {'connected_gene': 'RNU6-270P', 'score': 10.1}, {'connected_gene': 'C10orf126', 'score': 9.17}, {'connected_gene': 'LOC105376472', 'score': 0.39}]
chr10	GH10I029239	29239992	29240141	0.73	[{'connected_gene': 'LYZL1', 'score': 10.95}, {'connected_gene': 'RNU6-270P', 'score': 10.1}, {'connected_gene': 'C10orf126', 'score': 9.17}, {'connected_gene': 'LOC105376472', 'score': 0.39}]
chr10	GH10I029237	29237185	29238068	0.38	[{'connected_gene': 'LYZL1', 'score': 10.93}, {'connected_gene': 'RNU6-270P', 'score': 10.1}, {'connected_gene': 'C10orf126', 'score': 9.17}, {'connected_gene': 'LOC105376472', 'score': 0.44}]
chr10	GH10I029088	29088641	29089580	0.31	[{'connected_gene': 'LYZL1', 'score': 10.5}, {'connected_gene': 'RNU6-270P', 'score': 9.98}, {'connected_gene': 'GC10P029100', 'score': 0.39}, {'connected_gene': 'GC10M029997', 'score': 0.17}]
chr10	GH10I029327	29327059	29327221	0.92	[{'connected_gene': 'LYZL1', 'score': 0.28}, {'connected_gene': 'LOC105376473', 'score': 0.25}]
chr10	GH10I029302	29302818	29305000	0.95	[{'connected_gene': 'LYZL1', 'score': 0.39}, {'connected_gene': 'LOC105376473', 'score': 0.19}]
chr10	GH10I029328	29328579	29329811	0.69	[{'connected_gene': 'LYZL1', 'score': 0.26}, {'connected_gene': 'LOC105376473', 'score': 0.25}]
chr10	GH10I029289	29289043	29289102	0.5	[{'connected_gene': 'LYZL1', 'score': 550.77}, {'connected_gene': 'LOC105376473', 'score': 0.17}]
chr10	GH10I029277	29277392	29277641	0.2	[{'connected_gene': 'LYZL1', 'score': 0.39}, {'connected_gene': 'LOC105376472', 'score': 0.25}]
chr10	GH10I029276	29276592	29276741	0.76	[{'connected_gene': 'LYZL1', 'score': 0.39}, {'connected_gene': 'LOC105376472', 'score': 0.25}]
chr10	GH10I029272	29272435	29274024	0.71	[{'connected_gene': 'LYZL1', 'score': 0.37}, {'connected_gene': 'LOC105376472', 'score': 0.26}]
chr10	GH10I029149	29149813	29150627	0.56	[{'connected_gene': 'LYZL1', 'score': 10.92}, {'connected_gene': 'LOC105376471', 'score': 0.26}, {'connected_gene': 'LOC105376472', 'score': 0.18}]
chr10	GH10I029150	29150672	29150803	0.2	[{'connected_gene': 'LYZL1', 'score': 10.92}, {'connected_gene': 'LOC105376471', 'score': 0.26}, {'connected_gene': 'LOC105376472', 'score': 0.18}]
chr10	GH10I028884	28884432	28884581	0.73	[{'connected_gene': 'C10orf126', 'score': 11.85}, {'connected_gene': 'LYZL1', 'score': 10.0}, {'connected_gene': 'RNA5SP308', 'score': 0.39}, {'connected_gene': 'GC10M029847', 'score': 0.39}, {'connected_gene': 'GC10M029999', 'score': 0.37}, {'connected_gene': 'RPL21P93', 'score': 0.37}]
chr10	GH10I028675	28675661	28682961	2.07	[{'connected_gene': 'BAMBI', 'score': 558.21}, {'connected_gene': 'WAC-AS1', 'score': 19.26}, {'connected_gene': 'RNU6-270P', 'score': 10.65}, {'connected_gene': 'LYZL1', 'score': 9.77}, {'connected_gene': 'WAC', 'score': 5.03}, {'connected_gene': 'LOC105376470', 'score': 0.31}]
chr10	GH10I028704	28704290	28705352	0.31	[{'connected_gene': 'WAC-AS1', 'score': 18.25}, {'connected_gene': 'RNU6-270P', 'score': 11.15}, {'connected_gene': 'LYZL1', 'score': 10.08}, {'connected_gene': 'LOC105376470', 'score': 0.77}, {'connected_gene': 'BAMBI', 'score': 0.31}]
chr10	GH10I028729	28729941	28730747	0.43	[{'connected_gene': 'RNU6-270P', 'score': 11.26}, {'connected_gene': 'LYZL1', 'score': 10.63}, {'connected_gene': 'C10orf126', 'score': 10.12}, {'connected_gene': 'MKX-AS1', 'score': 5.23}, {'connected_gene': 'LINC01517', 'score': 0.39}, {'connected_gene': 'LOC105376470', 'score': 0.34}]
chr10	GH10I028709	28709907	28711580	0.31	[{'connected_gene': 'RNU6-270P', 'score': 11.16}, {'connected_gene': 'LYZL1', 'score': 10.08}, {'connected_gene': 'LOC105376470', 'score': 0.77}, {'connected_gene': 'LINC01517', 'score': 0.29}]
chr10	GH10I029344	29344200	29344741	0.69	[{'connected_gene': 'LOC105376473', 'score': 0.29}, {'connected_gene': 'LYZL1', 'score': 0.22}]
chr10	GH10I029353	29353407	29354473	0.75	[{'connected_gene': 'LOC105376473', 'score': 0.34}, {'connected_gene': 'LYZL1', 'score': 0.21}]
chr10	GH10I029357	29357132	29357281	0.2	[{'connected_gene': 'LOC105376473', 'score': 0.37}, {'connected_gene': 'LYZL1', 'score': 0.2}]
chr10	GH10I029358	29357612	29358785	0.54	[{'connected_gene': 'LOC105376473', 'score': 0.37}, {'connected_gene': 'LYZL1', 'score': 0.2}]
chr10	GH10I029370	29370104	29370863	0.76	[{'connected_gene': 'SVIL-AS1', 'score': 15.35}, {'connected_gene': 'LOC105376473', 'score': 0.77}, {'connected_gene': 'LYZL1', 'score': 0.18}]
chr10	GH10I029101	29101732	29102867	0.69	[{'connected_gene': 'GC10P029100', 'score': 550.77}, {'connected_gene': 'LYZL1', 'score': 10.53}, {'connected_gene': 'LOC105376471', 'score': 0.44}]
chr10	GH10I029099	29099052	29099201	0.76	[{'connected_gene': 'GC10P029100', 'score': 550.77}, {'connected_gene': 'LYZL1', 'score': 10.53}, {'connected_gene': 'GC10M029997', 'score': 0.15}]
chr10	GH10I028809	28809656	28811529	1.24	[{'connected_gene': 'ENSG00000271220', 'score': 27.5}, {'connected_gene': 'BAMBI', 'score': 13.22}, {'connected_gene': 'C10orf126', 'score': 11.72}, {'connected_gene': 'RNU6-270P', 'score': 11.34}, {'connected_gene': 'LYZL1', 'score': 10.22}, {'connected_gene': 'GC10M030003', 'score': 0.31}, {'connected_gene': 'PIRC48', 'score': 0.26}]