PsyMuKB

PPI network (data source: BioGrid)

A gene is determined as “expressed” when its expression values are above the pre-determined cutoff, which is the mean normalized expression(base 2 log of (TPM+1)) +1 in all brain tissue from GTEx v7 or BrainSpan data.

A protein is determined as “expressed” when its expression values are above the pre-determined cutoff, which is the normalized expression (base 10 log of iBAQ intensity) ≥0.5 in at least one brain tissue from ProteomicsDB data. Otherwise, a gene or protein is determined as either with below-cutoff expressions or no available data.

	The queried gene/protein
	The interacting partner is expressed at mRNA-level
	The interacting partner is expressed at protein-level
	The interacting partner is expressed at both mRNA and protein level
	The interacting partner is with either below-cutoff expressions or no expression data at both mRNA and protein level
	The interacting partner is hit by coding DNMs
	Physical interaction between queried gene/protein and its partner
	Physical interaction between two interacting partners

Symbol A	GeneA coding DNM count	Symbol B	GeneB coding DNM count	Interaction detection method	Publication	Evidence
GABARAPL1	0	TBC1D17	2	affinity chromatography technology, pull down	Popovic D (2012), Popovic D (2012)	2
RABGAP1L	4	WDFY3	17	two hybrid	Grossmann A (2015)	1
MAP1LC3A	0	TOLLIP	3	affinity chromatography technology	Lu K (2014)	1
CALCOCO2	0	MAP1LC3A	0	affinity chromatography technology, affinity chromatography technology	Thurston TL (2009), Verlhac P (2015)	2
MAP1LC3B	1	ATG3	4	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Behrends C (2010), Tanida I (2004), Gao W (2013)	3
MAP1LC3B	1	PRKCI	1	affinity chromatography technology	Behrends C (2010)	1
CLINT1	1	CLTCL1	4	affinity chromatography technology	Huttlin EL (2017)	1
MAP1LC3B	1	TBC1D25	3	two hybrid, pull down	Itoh T (2011), Itoh T (2011)	2
UBQLN1	1	APP	1	two hybrid, affinity chromatography technology, fluorescent resonance energy transfe	Stieren ES (2011), Stieren ES (2011), Hiltunen M (2006)	3
SQSTM1	0	HADHA	3	affinity chromatography technology, affinity chromatography technology	Behrends C (2010), Milan E (2015)	2
TUBA1B	0	TUBB4B	6	biochemical	Havugimana PC (2012)	1
EGFR	5	LGALS3	0	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Guo HB (2009), Merlin J (2011), Foerster S (2013)	3
MAP1LC3B	1	HADHA	3	affinity chromatography technology	Behrends C (2010)	1
MAP1LC3A	0	SERBP1	2	affinity chromatography technology	Wang BS (2013)	1
LGALS3	0	IPO5	0	affinity chromatography technology	Carvalho RS (2014)	1
MAP1LC3A	0	PLIN1	4	imaging technique	Wang L (2017)	1
MAP1LC3B	1	STK4	1	affinity chromatography technology	Behrends C (2010)	1
SNCA	0	MAP1B	5	pull down	Jensen PH (2000)	1
SERBP1	2	PIAS4	5	two hybrid	Lemos TA (2006)	1
EGFR	5	HSPA5	0	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Lavictoire SJ (2003), Foerster S (2013), Li J (2013), Yao Z (2017)	4
CLTA	1	CLTC	12	biochemical, affinity chromatography technology	Wan C (2015), Hein MY (2015)	2
MAP1LC3A	0	EPAS1	6	affinity chromatography technology	Liu XD (2014)	1
GABARAPL1	0	HADHB	4	affinity chromatography technology	Behrends C (2010)	1
DDX5	2	HNRNPM	1	biochemical	Havugimana PC (2012)	1
MAP1LC3A	0	PELP1	3	affinity chromatography technology	Wang BS (2013)	1
MAP1S	3	MAP1B	5	affinity chromatography technology	Hauri S (2013)	1
GABARAPL1	0	TBC1D5	0	affinity chromatography technology, pull down, two hybrid	Popovic D (2012), Popovic D (2012), Rolland T (2014)	3
SNCA	0	GABARAPL1	0	pull down	Schnack C (2008)	1
PRKAG2	5	MAP1B	5	affinity chromatography technology	Behrends C (2010)	1
MDM2	2	PSMD4	1	affinity chromatography technology, pull down, enzymatic study, affinity chromatography technology, enzymatic study, pull down	Kulikov R (2010), Kulikov R (2010), Uchiki T (2009), Dolezelova P (2012), Kim HT (2012), Sparks A (2014)	6
MAP1LC3B	1	LMNB1	1	pull down, affinity chromatography technology, affinity chromatography technology, protein complementation assay, imaging technique	Dou Z (2015), Dou Z (2015), Dou Z (2015), Dou Z (2015), Dou Z (2015)	5
MAP1LC3A	0	CLTA	1	affinity chromatography technology	Behrends C (2010)	1
UBC	7	TOLLIP	3	pull down, pull down, pull down, biochemical, pull down, pull down, pull down, pull down	Fenner BJ (2009), Nathan JA (2013), Mitra S (2013), Mitra S (2013), Shih SC (2003), Lu K (2014), Lu K (2014), Zhang X (2017)	8
MAP1LC3A	0	TBC1D2	2	affinity chromatography technology, pull down	Popovic D (2012), Popovic D (2012)	2
GABARAPL1	0	TBC1D2	2	affinity chromatography technology, pull down	Popovic D (2012), Popovic D (2012)	2
HSPA5	0	HNRNPU	12	affinity chromatography technology, biochemical	Li J (2013), Wan C (2015)	2
RASSF5	2	STK3	1	affinity chromatography technology, two hybrid, affinity chromatography technology, bioid, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Behrends C (2010), Wang J (2011), Couzens AL (2013), Couzens AL (2013), Varjosalo M (2013), Hauri S (2013), Hauri S (2013)	7
CASP8	1	PRKCI	1	two hybrid	Wang J (2011)	1
HNRNPH1	3	HNRNPM	1	affinity chromatography technology	Jeronimo C (2007)	1
SYNPO2	1	MAP1LC3A	0	affinity chromatography technology	Ulbricht A (2013)	1
MEFV	3	MAP1LC3A	0	pull down	Kimura T (2015)	1
HTT	14	ULK1	8	affinity chromatography technology, affinity chromatography technology	Rui YN (2015), Rui YN (2015)	2
RAB3GAP1	5	RAB3GAP2	7	biochemical, affinity chromatography technology, biochemical	Kristensen AR (2012), Baron Y (2014), Wan C (2015)	3
UBC	7	VCP	6	affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, pull down, pull down	Matsumoto M (2005), Zhong X (2006), Dai RM (2001), Bish RA (2007), Lim JJ (2016), Zhang X (2017)	6
EPAS1	6	SQSTM1	0	affinity chromatography technology	Liu XD (2014)	1
EGFR	5	HADHB	4	affinity chromatography technology	Tong J (2014)	1
MAP1LC3A	0	PDCD6IP	3	affinity chromatography technology	Behrends C (2010)	1
SQSTM1	0	NIPSNAP2	1	affinity chromatography technology, affinity chromatography technology	Behrends C (2010), Milan E (2015)	2
GABARAPL1	0	NIPSNAP2	1	affinity chromatography technology	Behrends C (2010)	1
HADHA	3	HNRNPH1	3	biochemical	Havugimana PC (2012)	1
VCP	6	RAB3GAP1	5	affinity chromatography technology	Yu CC (2013)	1
GABARAPL1	0	ULK1	8	affinity chromatography technology	Alemu EA (2012)	1
MAP1LC3B	1	RASSF5	2	affinity chromatography technology	Behrends C (2010)	1
MDM2	2	UBC	7	pull down, enzymatic study, enzymatic study	Higashitsuji H (2005), Luo J (2013), Poyurovsky MV (2007)	3
PRKCI	1	SQSTM1	0	two hybrid, pull down, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, unspecified method, affinity chromatography technology, fluorescent resonance energy transfe	Sanchez P (1998), Sanchez P (1998), Sanchez P (1998), Sanchez P (1998), Behrends C (2010), Brajenovic M (2004), Lamark T (2003), Lamark T (2003), Lamark T (2003), Yang JQ (2010), Yang JQ (2010), Erdogan E (2006), Milan E (2015), Tsai LC (2015), Tsai LC (2015), Tsai LC (2015)	16
EPHA7	2	MAP1LC3A	0	two hybrid	Wang J (2011)	1
LGALS3	0	SQSTM1	0	imaging technique	Chen X (2014)	1
VCP	6	TUBB4B	6	affinity chromatography technology, biochemical	Fogeron ML (2013), Wan C (2015)	2
HSPA1A	0	HSPA2	3	biochemical	Havugimana PC (2012)	1
MAP1LC3A	0	TBC1D10A	3	affinity chromatography technology, pull down	Popovic D (2012), Popovic D (2012)	2
GABARAPL1	0	RABGAP1L	4	affinity chromatography technology, pull down	Popovic D (2012), Popovic D (2012)	2
MAP1LC3A	0	SAFB	3	affinity chromatography technology	Wang BS (2013)	1
MAP1LC3B	1	ATG7	2	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Behrends C (2010), Tanida I (2004), Gao W (2013)	3
MAP1LC3A	0	CBX5	3	imaging technique, affinity chromatography technology	Chen S (2014), Chen S (2014)	2
UBC	7	PRKCI	1	pull down	Zhang X (2017)	1
MAP1LC3B	1	BNIP3L	1	affinity chromatography technology	Novak I (2010)	1
SQSTM1	0	NBR1	0	affinity chromatography technology, two hybrid, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, pull down	DAgostino C (2011), Lange S (2005), Lamark T (2003), Lamark T (2003), Yang JQ (2010), Erdogan E (2006), Yamashita SI (2014), Nicot AS (2014)	8
SQSTM1	0	UBC	7	two hybrid, two hybrid, affinity chromatography technology, affinity chromatography technology, unspecified method, x-ray crystallography, affinity chromatography technology, unspecified method, pull down, pull down, pull down, affinity chromatography technology, imaging technique, pull down, pull down, pull down, pull down, affinity chromatography technology, pull down, affinity chromatography technology, pull down, affinity chromatography technology, pull down, pull down, pull down, pull down, pull down, pull down, pull down, affinity chromatography technology, x-ray crystallography, affinity chromatography technology, affinity chromatography technology, pull down, pull down, pull down, imaging technique, imaging technique, pull down, affinity chromatography technology, affinity chromatography technology, imaging technique, imaging technique	Vinayagam A (2011), Vadlamudi RK (1996), Tanji K (2012), Matsumoto G (2011), Long J (2008), Long J (2008), Najat D (2009), Najat D (2009), Hocking LJ (2004), Boh BK (2011), Long J (2010), Seibenhener ML (2004), Seibenhener ML (2004), Seibenhener ML (2004), Fenner BJ (2009), Nathan JA (2013), Ciani B (2003), Shi J (2013), Goode A (2014), Bish RA (2007), Lu K (2014), Zhou L (2014), Zhou L (2014), Vadlamudi RK (1996), Long J (2008), Cavey JR (2006), Cavey JR (2006), Kirkin V (2009), Nakayasu ES (2013), Nakayasu ES (2013), Lim J (2015), Milan E (2015), Milan E (2015), Ordureau A (2015), Wurzer B (2015), Zhang X (2017), Wang L (2017), Liu X (2017), Peng H (2017), Donohue E (2014), Nibe Y (2017), Nibe Y (2017), Govindaraju VK (2017)	43
CALCOCO2	0	SQSTM1	0	affinity chromatography technology	Cemma M (2011)	1
MAP1LC3B	1	TBC1D17	2	two hybrid	Popovic D (2012)	1
ATG3	4	ATG4B	1	affinity chromatography technology	Behrends C (2010)	1
UBQLN4	2	MAP1LC3A	0	affinity chromatography technology	Lee DY (2013)	1
TNIP1	1	GABARAPL1	0	two hybrid	Rolland T (2014)	1
MDM2	2	MAP1LC3A	0	enzymatic study	Guo Z (2013)	1
UBC	7	HADHA	3	affinity chromatography technology	Matsumoto M (2005)	1
LGALS3	0	APP	1	pull down	Olah J (2011)	1
SRPK1	2	MAP1LC3A	0	enzymatic study	Varjosalo M (2013)	1
HNRNPU	12	RPL4	4	affinity chromatography technology	Hein MY (2015)	1
CASP8	1	SQSTM1	0	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Pan JA (2011), Huang S (2013), Huang S (2013)	3
MAP1LC3B	1	SQSTM1	0	two hybrid, affinity chromatography technology, two hybrid, two hybrid, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, two hybrid, pull down, x-ray crystallography, affinity chromatography technology, x-ray crystallography, pull down, affinity chromatography technology, two hybrid, imaging technique, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Stelzl U (2005), Behrends C (2010), Vinayagam A (2011), Kirkin V (2009), Kirkin V (2009), Liang X (2013), Liang X (2013), Novak I (2010), Novak I (2010), Rogov VV (2012), Gao W (2013), Maruyama Y (2014), Maruyama Y (2014), Maruyama Y (2014), Yamashita SI (2014), Wurzer B (2015), Wurzer B (2015), Wurzer B (2015), Sun A (2017), Cohen-Kaplan V (2016), Dou Z (2015), Galindo-Moreno M (2017)	22
PINK1	2	UBC	7	enzymatic study, enzymatic study, affinity chromatography technology, enzymatic study, enzymatic study, enzymatic study, enzymatic study, enzymatic study	Koyano F (2014), Kane LA (2014), Kane LA (2014), Shiba-Fukushima K (2014), Okatsu K (2015), Fiesel FC (2015), Ando M (2017), Klosowiak JL (2016)	8
MAP1LC3A	0	ASAP2	5	affinity chromatography technology	Wang BS (2013)	1
PELP1	3	IPO5	0	affinity chromatography technology, biochemical	Castle CD (2012), Castle CD (2012)	2
EGFR	5	CLU	1	affinity chromatography technology	Tong J (2014)	1
EPHA7	2	HSPA5	0	affinity chromatography technology	Huttlin EL (2017)	1
SERBP1	2	APP	1	pull down	Olah J (2011)	1
ATG101	1	ATG13	0	affinity chromatography technology, affinity chromatography technology, two hybrid, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Behrends C (2010), Behrends C (2010), Fujita N (2013), Hosokawa N (2009), Hosokawa N (2009), Hosokawa N (2009)	6
MAP1LC3B	1	MAP1B	5	affinity chromatography technology	Behrends C (2010)	1
MAP1LC3B	1	SAFB	3	two hybrid	Vinayagam A (2011)	1
EGFR	5	SNCA	0	two hybrid, protein complementation assay, affinity chromatography technology	Kotlyar M (2015), Petschnigg J (2014), Petschnigg J (2014)	3
MAP1LC3A	0	DCAF1	5	affinity chromatography technology, affinity chromatography technology	Wang BS (2013), Wang BS (2013)	2
APP	1	AKAP13	11	pull down	Virok DP (2011)	1
MATR3	2	DDX5	2	affinity chromatography technology	Hein MY (2015)	1
GABARAPL1	0	IPO5	0	affinity chromatography technology	Behrends C (2010)	1
MAP1LC3B	1	CLTA	1	two hybrid	Vinayagam A (2011)	1
MEFV	3	ULK1	8	affinity chromatography technology, pull down	Kimura T (2015), Kimura T (2015)	2
VCP	6	PSMD4	1	affinity chromatography technology, affinity chromatography technology	Arrojo E Drigo R (2013), McNeill H (2004)	2
TBC1D7	1	APP	1	pull down	Olah J (2011)	1
UBC	7	HNRNPM	1	affinity chromatography technology, pull down	Matsumoto M (2005), Nathan JA (2013)	2
VCP	6	TBC1D9B	4	affinity chromatography technology	Yu CC (2013)	1
MAP1LC3A	0	TMEM160	0	affinity chromatography technology	Behrends C (2010)	1
TUBB	3	PDCD6IP	3	affinity chromatography technology	Schmidt MH (2003)	1
TOLLIP	3	CAV1	0	affinity chromatography technology	Ohnuma K (2005)	1
TRIM21	0	UBC	7	enzymatic study	McEwan WA (2013)	1
SAFB	3	SAFB2	3	two hybrid, affinity chromatography technology, biochemical	Townson SM (2003), Townson SM (2003), Wan C (2015)	3
NBR1	0	UBC	7	pull down, pull down, pull down, x-ray crystallography, pull down, pull down, affinity chromatography technology, pull down	Waters S (2009), Kirkin V (2009), Walinda E (2014), Walinda E (2014), Nicot AS (2014), Nakayasu ES (2013), Nakayasu ES (2013), Zhang X (2017)	8
UBC	7	CAV1	0	affinity chromatography technology, imaging technique	Luo X (2017), Luo X (2017)	2
ATG101	1	ULK1	8	affinity chromatography technology, affinity chromatography technology	Hosokawa N (2009), Rui YN (2015)	2
EPAS1	6	UBC	7	affinity chromatography technology	Steunou AL (2012)	1
DVL2	5	HSPA5	0	affinity chromatography technology	Hein MY (2015)	1
KIF15	4	MAP1LC3A	0	two hybrid	Stelzl U (2005)	1
PRPF40A	5	HNRNPU	12	pull down	Ingham RJ (2005)	1
VCP	6	RRBP1	7	affinity chromatography technology	Fogeron ML (2013)	1
MAP1LC3B	1	MAP1A	1	affinity chromatography technology	Behrends C (2010)	1
EGFR	5	HSPA1A	0	protein complementation assay, two hybrid, protein complementation assay, affinity chromatography technology, affinity chromatography technology	Deribe YL (2009), Kotlyar M (2015), Petschnigg J (2014), Petschnigg J (2014), Li J (2013)	5
HSPA2	3	APP	1	pull down	Olah J (2011)	1
PIK3C2A	7	CLTA	1	biochemical	Wan C (2015)	1
VCP	6	RABGAP1	2	affinity chromatography technology	Yu CC (2013)	1
MDM2	2	HNRNPM	1	affinity chromatography technology	Okoro DR (2013)	1
MAP1LC3A	0	LMNB1	1	pull down	Dou Z (2015)	1
DDX5	2	EPRS	2	biochemical	Havugimana PC (2012)	1
KXD1	1	MAP1LC3B	1	two hybrid, two hybrid	Rual JF (2005), Rolland T (2014)	2
MAP1LC3A	0	HNRNPM	1	affinity chromatography technology	Wang BS (2013)	1
NOTCH1	25	DDX17	2	affinity chromatography technology	Yatim A (2012)	1
MDM2	2	CLU	1	pull down	Miyamoto-Sato E (2010)	1
MAP1LC3A	0	TUBA1B	0	affinity chromatography technology	Wang BS (2013)	1
HNRNPH1	3	HNRNPU	12	affinity chromatography technology	Jeronimo C (2007)	1
KEAP1	0	TMEM160	0	affinity chromatography technology	Sowa ME (2009)	1
UBC	7	CALCOCO2	0	pull down, affinity chromatography technology, two hybrid, pull down, x-ray crystallography, pull down, affinity chromatography technology, imaging technique, pull down, imaging technique	Fenner BJ (2009), Fenner BJ (2009), Rolland T (2014), Tumbarello DA (2015), Xie X (2015), Xie X (2015), Xie X (2015), Xie X (2015), Ordureau A (2015), Minowa-Nozawa A (2017)	10
PLIN1	4	SQSTM1	0	imaging technique	Wang L (2017)	1
MAP1LC3B	1	UBC	7	imaging technique	Liu X (2017)	1
TNIP1	1	MAP1LC3B	1	two hybrid	Rolland T (2014)	1
MAP1LC3A	0	TBC1D2B	3	affinity chromatography technology, pull down	Popovic D (2012), Popovic D (2012)	2
MAP1LC3B	1	TMEM160	0	affinity chromatography technology	Behrends C (2010)	1
CAV1	0	MAP1LC3A	0	imaging technique	Luo X (2017)	1
EGFR	5	TUBB	3	affinity chromatography technology	Foerster S (2013)	1
SNCA	0	CLTC	12	affinity chromatography technology	McFarland MA (2008)	1
MEFV	3	GABARAPL1	0	pull down	Kimura T (2015)	1
GABARAPL1	0	HADHA	3	affinity chromatography technology	Behrends C (2010)	1
LGALS3	0	MEFV	3	pull down	Chauhan S (2016)	1
UBC	7	TNIP1	1	affinity chromatography technology, x-ray crystallography, pull down, pull down, pull down, pull down	Wagner S (2008), Wagner S (2008), Fenner BJ (2009), Verhelst K (2012), Zhang X (2017), Kliza K (2017)	6
MAP1LC3A	0	TUBB	3	affinity chromatography technology	Wang BS (2013)	1
PRPF40A	5	RPL4	4	pull down	Ingham RJ (2005)	1
MAP1LC3A	0	MAP1S	3	affinity chromatography technology, affinity chromatography technology, pull down	Xie R (2011), Xie R (2011), Xie R (2011)	3
MDM2	2	TUBB	3	affinity chromatography technology	Frum R (2007)	1
MAP1LC3A	0	HSPA5	0	affinity chromatography technology	Wang BS (2013)	1
HTT	14	EGFR	5	affinity chromatography technology	Liu YF (1997)	1
PSMD4	1	APP	1	pull down	Olah J (2011)	1
MAP1LC3A	0	CLTC	12	affinity chromatography technology, affinity chromatography technology	Behrends C (2010), Wang BS (2013)	2
MAP1LC3A	0	CASP8	1	affinity chromatography technology, affinity chromatography technology	Pan JA (2011), Pan JA (2011)	2
PRPF40A	5	UBQLN1	1	two hybrid	Colland F (2004)	1
EGFR	5	PSMD4	1	protein complementation assay	Deribe YL (2009)	1
EGFR	5	TUBB4B	6	affinity chromatography technology	Foerster S (2013)	1
MAP1LC3A	0	NIPSNAP2	1	affinity chromatography technology	Behrends C (2010)	1
SNCA	0	TUBA1B	0	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, unspecified method, affinity chromatography technology, affinity chromatography technology	Alim MA (2002), Alim MA (2002), Alim MA (2002), Woods WS (2007), Wersinger C (2005), Wersinger C (2005)	6
MAP1LC3B	1	TBC1D9B	4	two hybrid	Popovic D (2012)	1
MAP1LC3A	0	FYCO1	6	affinity chromatography technology, unspecified method, affinity chromatography technology	Behrends C (2010), Alemu EA (2012), Wang BS (2013)	3
TP53INP2	1	MAP1LC3A	0	affinity chromatography technology, affinity chromatography technology	Mauvezin C (2010), Mauvezin C (2010)	2
MAP1LC3A	0	UBC	7	biochemical, imaging technique	Fujita N (2013), Govindaraju VK (2017)	2
UBC	7	TBC1D5	0	pull down	Zhang X (2017)	1
HTT	14	UBQLN1	1	affinity chromatography technology	Wang H (2007)	1
UBQLN1	1	VCP	6	pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Lim PJ (2009), Yu CC (2013), Lim PJ (2009), Lim PJ (2009)	4
ATG3	4	CLU	1	affinity chromatography technology, affinity chromatography technology	Zhang F (2014), Zhang F (2014)	2
VCP	6	HNRNPH1	3	affinity chromatography technology	Fogeron ML (2013)	1
UBQLN1	1	MAP1LC3A	0	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Rothenberg C (2010), Rothenberg C (2010), Lee DY (2013)	3
GABARAPL1	0	BNIP3L	1	affinity chromatography technology	Novak I (2010)	1
HSPA1A	0	SNCA	0	fluorescent resonance energy transfe, pull down	Roodveldt C (2009), Roodveldt C (2009)	2
VCP	6	APP	1	affinity chromatography technology	Jang JK (2017)	1
SRPK1	2	HNRNPM	1	affinity chromatography technology	So J (2015)	1
MAP1LC3B	1	KEAP1	0	affinity chromatography technology	Behrends C (2010)	1
MAP1LC3A	0	HSPA1A	0	affinity chromatography technology	Wang BS (2013)	1
EGFR	5	HSPA2	3	affinity chromatography technology	Foerster S (2013)	1
SRPK1	2	SAFB	3	two hybrid	Peidis P (2011)	1
EGFR	5	CLTCL1	4	affinity chromatography technology	Wu SL (2006)	1
PRKAG2	5	MAP1LC3A	0	affinity chromatography technology	Behrends C (2010)	1
MAP1LC3A	0	MATR3	2	affinity chromatography technology	Wang BS (2013)	1
CLU	1	HSPA5	0	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Wang C (2013), Li N (2013), Li N (2013)	3
ATG3	4	ATG7	2	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology	Tanida I (2002), Tanida I (2002), Behrends C (2010), Behrends C (2010), Qiu Y (2013), Huttlin EL (2017)	6
MAP1LC3A	0	ATG3	4	affinity chromatography technology, pull down, affinity chromatography technology, pull down, enzymatic study, affinity chromatography technology	Behrends C (2010), Gao Z (2010), Lee JS (2009), Sou YS (2006), Sou YS (2006), Zhang F (2014)	6
ATG101	1	HADHB	4	affinity chromatography technology	Behrends C (2010)	1
CLTA	1	VCP	6	affinity chromatography technology	Pleasure IT (1993)	1
CAV1	0	VCP	6	affinity chromatography technology, imaging technique, affinity chromatography technology, pull down	Kirchner P (2013), Kirchner P (2013), Chen SF (2013), Chen SF (2013)	4
HNRNPM	1	RRBP1	7	biochemical	Havugimana PC (2012)	1
RABGAP1	2	RABGAP1L	4	affinity chromatography technology	Behrends C (2010)	1
CLTC	12	CLTCL1	4	affinity chromatography technology	Hein MY (2015)	1
HTT	14	TUBB	3	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Mitsui K (2002), Hoffner G (2002), Hoffner G (2002)	3
CALCOCO2	0	PIAS4	5	two hybrid	Rual JF (2005)	1
RAB33B	0	MAP1LC3A	0	affinity chromatography technology	Itoh T (2008)	1
PSMD4	1	SQSTM1	0	affinity chromatography technology	Seibenhener ML (2004)	1
HTT	14	MAP1LC3A	0	affinity chromatography technology	Filimonenko M (2010)	1
SYNPO2	1	SQSTM1	0	affinity chromatography technology	Ulbricht A (2013)	1
MAP1LC3A	0	DDX17	2	affinity chromatography technology	Wang BS (2013)	1
KEAP1	0	UBC	7	affinity chromatography technology, affinity chromatography technology, pull down	Gjyshi O (2015), Su C (2015), Zhang X (2017)	3
MAP1LC3B	1	CASP8	1	two hybrid	Vinayagam A (2011)	1
UBC	7	LMNB1	1	affinity chromatography technology	Matsumoto M (2005)	1
VCP	6	TUBB	3	affinity chromatography technology, biochemical	Fogeron ML (2013), Wan C (2015)	2
MAP1LC3B	1	ATG4B	1	two hybrid, affinity chromatography technology, two hybrid, two hybrid, enzymatic study, affinity chromatography technology	Stelzl U (2005), Behrends C (2010), Vinayagam A (2011), Novak I (2010), Tanida I (2004), Gao W (2013)	6
GABARAPL1	0	ATG3	4	affinity chromatography technology, affinity chromatography technology	Behrends C (2010), Tanida I (2006)	2
RASSF5	2	STK4	1	affinity chromatography technology, affinity chromatography technology, bioid, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Behrends C (2010), Behrends C (2010), Couzens AL (2013), Varjosalo M (2013), Hauri S (2013), Hauri S (2013)	6
GABARAPL1	0	TBC1D9B	4	affinity chromatography technology, pull down	Popovic D (2012), Popovic D (2012)	2
RASSF5	2	MAP1B	5	affinity chromatography technology, affinity chromatography technology	Behrends C (2010), Hauri S (2013)	2
EGFR	5	DDX5	2	affinity chromatography technology	Yao Z (2017)	1
UBC	7	PSMD4	1	pull down, pull down, pull down, pull down, x-ray crystallography, affinity chromatography technology, x-ray crystallography, pull down, pull down, pull down, pull down, pull down, pull down, pull down, pull down, pull down, pull down, pull down, affinity chromatography technology, affinity chromatography technology, pull down, pull down, pull down	Fallon L (2006), Wang Q (2005), Leonchiks A (2002), Isasa M (2010), Wang Q (2005), Wang Q (2005), Haririnia A (2007), Fenner BJ (2009), Raasi S (2005), Nathan JA (2013), Beal R (1996), Uchiki T (2009), Young P (1998), Fujiwara K (2004), Dimitrov S (2005), Yoshimoto N (2009), Hawryluk MJ (2006), Nakayasu ES (2013), Nakayasu ES (2013), Tomaic V (2015), Aguileta MA (2015), Zhang X (2017), Kristariyanto YA (2017)	23
HNRNPM	1	LMNB1	1	biochemical	Havugimana PC (2012)	1
SRPK1	2	DDX5	2	affinity chromatography technology	So J (2015)	1
MAP1LC3B	1	TRIM21	0	pull down	Kimura T (2015)	1
NOTCH1	25	IPO5	0	affinity chromatography technology	Yatim A (2012)	1
HTT	14	VCP	6	pull down, affinity chromatography technology, affinity chromatography technology, pull down	Yang H (2010), Yu CC (2013), Fujita K (2013), Fujita K (2013)	4
DDX5	2	PRPF40A	5	biochemical	Havugimana PC (2012)	1
GABARAPL1	0	NSMAF	5	affinity chromatography technology, affinity chromatography technology	Behrends C (2010), Huttlin EL (2017)	2
TRIM21	0	ULK1	8	affinity chromatography technology	Kimura T (2015)	1
MAP1LC3A	0	HSPA2	3	affinity chromatography technology	Wang BS (2013)	1
MAP1LC3A	0	RASSF5	2	affinity chromatography technology	Behrends C (2010)	1
OPTN	1	TBC1D17	2	two hybrid, two hybrid, affinity chromatography technology, pull down	Rual JF (2005), Vaibhava V (2012), Vaibhava V (2012), Vaibhava V (2012)	4
APP	1	SNCA	0	pull down, pull down, affinity chromatography technology, affinity chromatography technology, pull down, pull down, imaging technique	Jensen PH (1997), Yoshimoto M (1995), Tsigelny IF (2008), Tsigelny IF (2008), Tsigelny IF (2008), Olah J (2011), Chen TC (2014)	7
MAP1LC3A	0	OPTN	1	two hybrid, affinity chromatography technology, pull down, pull down	Wild P (2011), Wild P (2011), Liu Z (2014), Wild P (2011)	4
PIAS4	5	PRPF40A	5	two hybrid	Goehler H (2004)	1
UBC	7	ATG13	0	affinity chromatography technology	Matsumoto M (2005)	1
MAP1LC3A	0	HADHA	3	affinity chromatography technology	Behrends C (2010)	1
GABARAPL1	0	PRKCI	1	affinity chromatography technology	Behrends C (2010)	1
GABARAPL1	0	KEAP1	0	affinity chromatography technology	Behrends C (2010)	1
MAP1LC3A	0	TRIM21	0	pull down	Kimura T (2015)	1
CHDH	1	SQSTM1	0	affinity chromatography technology, affinity chromatography technology	Park S (2014), Park S (2014)	2
SQSTM1	0	SNCA	0	imaging technique	Schwarz L (2012)	1
MAP1LC3A	0	SAFB2	3	affinity chromatography technology	Behrends C (2010)	1
GABARAPL1	0	DVL2	5	affinity chromatography technology, pull down	Zhang Y (2011), Zhang Y (2011)	2
SQSTM1	0	ULK1	8	affinity chromatography technology, enzymatic study, enzymatic study, affinity chromatography technology	Ro SH (2014), Ro SH (2014), Lim J (2015), Lim J (2015)	4
UBC	7	HNRNPU	12	affinity chromatography technology	Matsumoto M (2005)	1
PRKCI	1	APP	1	pull down	Olah J (2011)	1
ATG3	4	MAP1B	5	affinity chromatography technology	Behrends C (2010)	1
TUBB4B	6	TUBB	3	biochemical, biochemical	Havugimana PC (2012), Kristensen AR (2012)	2
MAP1LC3A	0	TBC1D9B	4	affinity chromatography technology, pull down	Popovic D (2012), Popovic D (2012)	2
HNRNPH1	3	DDX5	2	affinity chromatography technology, two hybrid, two hybrid, biochemical	Jeronimo C (2007), Hegele A (2012), Hegele A (2012), Wan C (2015)	4
CASP8	1	OPTN	1	affinity chromatography technology, affinity chromatography technology	Nakazawa S (2016), Nakazawa S (2016)	2
UBQLN1	1	RASSF5	2	two hybrid, two hybrid	Lim J (2006), Rolland T (2014)	2
GABARAPL1	0	TBC1D16	6	affinity chromatography technology, pull down	Popovic D (2012), Popovic D (2012)	2
MAP1LC3A	0	RABGAP1L	4	affinity chromatography technology, pull down	Popovic D (2012), Popovic D (2012)	2
MATR3	2	DDX17	2	affinity chromatography technology	Hein MY (2015)	1
MATR3	2	HNRNPH1	3	affinity chromatography technology	Hein MY (2015)	1
SQSTM1	0	HADHB	4	affinity chromatography technology, affinity chromatography technology	Behrends C (2010), Milan E (2015)	2
NIPSNAP2	1	HADHA	3	affinity chromatography technology	Behrends C (2010)	1
PRKCI	1	NIPSNAP1	3	affinity chromatography technology	Brajenovic M (2004)	1
TUBA1B	0	TUBB	3	biochemical	Havugimana PC (2012)	1
KEAP1	0	EGFR	5	affinity chromatography technology, affinity chromatography technology, enzymatic study	Huo L (2015), Huo L (2015), Huo L (2015)	3
PIAS4	5	HTT	14	pull down, two hybrid	Goehler H (2004), Goehler H (2004)	2
MAP1LC3A	0	PGAP1	2	affinity chromatography technology	Wang BS (2013)	1
HNRNPU	12	DDX5	2	affinity chromatography technology	Hein MY (2015)	1
MAP1LC3B	1	TBC1D5	0	affinity chromatography technology	Popovic D (2012)	1
HADHA	3	TUBB4B	6	biochemical	Havugimana PC (2012)	1
PINK1	2	HSPA1A	0	affinity chromatography technology	Murata H (2013)	1
SNCA	0	PELP1	3	unspecified method	Woods WS (2007)	1
TUBB	3	HSPA1A	0	biochemical	Kristensen AR (2012)	1
CLTC	12	CAV1	0	affinity chromatography technology	Hein MY (2015)	1
MAP1LC3A	0	PRKCI	1	affinity chromatography technology	Behrends C (2010)	1
PINK1	2	TUBB	3	affinity chromatography technology	Imai Y (2010)	1
GABARAPL1	0	TBC1D10A	3	affinity chromatography technology, pull down	Popovic D (2012), Popovic D (2012)	2
PRPF40A	5	MAP1LC3A	0	two hybrid	Goehler H (2004)	1
MAP1LC3A	0	SQSTM1	0	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, imaging technique, affinity chromatography technology, biochemical, imaging technique, affinity chromatography technology, x-ray crystallography, pull down, affinity chromatography technology, imaging technique, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, imaging technique, pull down, pull down, affinity chromatography technology	Shvets E (2008), Shvets E (2008), Behrends C (2010), Gao Z (2010), Pan JA (2011), Pankiv S (2007), Pankiv S (2007), Shvets E (2011), Tung YT (2010), Bjorkoy G (2005), Kirkin V (2009), Lim J (2011), Lim J (2011), Pan JA (2012), Lee DY (2013), Wang BS (2013), Wang BS (2013), Sansanwal P (2012), Shi J (2013), Fujita N (2013), Chen X (2014), Liu XD (2014), Noda NN (2008), Noda NN (2008), Matsuzawa Y (2015), Matsuzawa Y (2015), Rui YN (2015), Rui YN (2015), Ciuffa R (2015), Wang N (2013), Hua F (2015), Rui YN (2015), Cha-Molstad H (2015), Paul S (2012), Puvirajesinghe TM (2016), Wang L (2017), Cha-Molstad H (2017), Peng H (2017), Lee Y (2017)	39
KEAP1	0	SQSTM1	0	affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, pull down, imaging technique, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, x-ray crystallography, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, two hybrid, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, enzymatic study	Sowa ME (2009), Jain A (2010), Jain A (2010), Lau A (2010), Lau A (2010), Lau A (2010), Lau A (2010), Lau A (2010), Lau A (2010), Inami Y (2011), Fan W (2010), Copple IM (2010), Copple IM (2010), Wright T (2013), Tanji K (2013), Ichimura Y (2013), Ichimura Y (2013), Ichimura Y (2013), Hast BE (2014), Hast BE (2014), Lerner C (2013), Rolland T (2014), Gjyshi O (2015), Bakkar N (2015), Milan E (2015), Park S (2016), Ge W (2017), Mildenberger J (2017), Lu K (2017), Lee Y (2017)	30
MAP1LC3A	0	KEAP1	0	affinity chromatography technology, affinity chromatography technology	Behrends C (2010), Fan W (2010)	2
MAP1LC3A	0	TBC1D16	6	affinity chromatography technology, pull down	Popovic D (2012), Popovic D (2012)	2
ULK1	8	ATG4B	1	affinity chromatography technology	Behrends C (2010)	1
MAP1LC3B	1	NIPSNAP1	3	affinity chromatography technology	Behrends C (2010)	1
FYCO1	6	APP	1	pull down	Olah J (2011)	1
CLTA	1	CLTCL1	4	biochemical	Wan C (2015)	1
SRPK1	2	CBX5	3	enzymatic study	Varjosalo M (2013)	1
MAP1LC3B	1	CALCOCO2	0	affinity chromatography technology	Verlhac P (2015)	1
SQSTM1	0	NOTCH1	25	affinity chromatography technology, affinity chromatography technology	Ahn JS (2016), Ahn JS (2016)	2
SQSTM1	0	CAV1	0	affinity chromatography technology, affinity chromatography technology	Liang X (2013), Luo X (2017)	2
PRKCI	1	NIPSNAP2	1	affinity chromatography technology	Brajenovic M (2004)	1
MAP1LC3A	0	DVL2	5	affinity chromatography technology, pull down	Gao C (2010), Gao C (2010)	2
RTKN	0	AKAP13	11	pull down	Baisamy L (2009)	1
CHDH	1	MAP1LC3A	0	affinity chromatography technology	Park S (2014)	1
STK3	1	MAP1S	3	bioid, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Couzens AL (2013), Varjosalo M (2013), Hauri S (2013), Hauri S (2013)	4
BCL10	0	SQSTM1	0	affinity chromatography technology	Paul S (2012)	1
SQSTM1	0	ATG4B	1	affinity chromatography technology	Tanji K (2012)	1
MAP1LC3A	0	APP	1	pull down	Olah J (2011)	1
MAP1LC3B	1	FUNDC1	0	two hybrid	Rolland T (2014)	1
SERBP1	2	RPL4	4	biochemical	Havugimana PC (2012)	1
GABARAPL1	0	ATG13	0	affinity chromatography technology	Alemu EA (2012)	1
SRPK1	2	GABARAPL1	0	enzymatic study	Varjosalo M (2013)	1
CLTC	12	PIK3C2A	7	affinity chromatography technology	Hein MY (2015)	1
MDM2	2	HNRNPU	12	affinity chromatography technology, affinity chromatography technology	Okoro DR (2013), Jacob AG (2014)	2
EGFR	5	APP	1	two hybrid, protein complementation assay	Kotlyar M (2015), Petschnigg J (2014)	2
MAP1LC3A	0	NBR1	0	affinity chromatography technology, two hybrid, pull down, affinity chromatography technology	DAgostino C (2011), Waters S (2009), Waters S (2009), Kirkin V (2009)	4
OPTN	1	TNIP1	1	two hybrid, two hybrid, two hybrid, affinity chromatography technology	Wang J (2011), Rolland T (2014), Yu H (2011), Huttlin EL (2017)	4
KEAP1	0	PDCD6IP	3	two hybrid	Wang J (2011)	1
MAP1LC3A	0	EGFR	5	affinity chromatography technology	Wang BS (2013)	1
MAP1LC3A	0	TUBB4B	6	affinity chromatography technology	Wang BS (2013)	1
GABARAPL1	0	FUNDC1	0	two hybrid	Rolland T (2014)	1
GABARAPL1	0	TBC1D2B	3	affinity chromatography technology, affinity chromatography technology, pull down	Behrends C (2010), Popovic D (2012), Popovic D (2012)	3
NIPSNAP2	1	NIPSNAP1	3	affinity chromatography technology, affinity chromatography technology	Behrends C (2010), Hein MY (2015)	2
GABARAPL1	0	OPTN	1	two hybrid, affinity chromatography technology, pull down	Wild P (2011), Wild P (2011), Wild P (2011)	3
MAP1LC3A	0	STK4	1	affinity chromatography technology	Behrends C (2010)	1
VCP	6	NIPSNAP2	1	affinity chromatography technology	Fogeron ML (2013)	1
CLINT1	1	PIK3C2A	7	affinity chromatography technology	Huttlin EL (2017)	1
KEAP1	0	NIPSNAP2	1	affinity chromatography technology	Sowa ME (2009)	1
GABARAPL1	0	NIPSNAP1	3	affinity chromatography technology	Behrends C (2010)	1
PSMD4	1	MAP1LC3A	0	affinity chromatography technology	Lee DY (2013)	1
PINK1	2	TOLLIP	3	affinity chromatography technology, affinity chromatography technology	Lee HJ (2012), Lee HJ (2012)	2
MAP1LC3A	0	PADI3	2	affinity chromatography technology	Wang BS (2013)	1
TP53INP1	0	SQSTM1	0	fluorescent resonance energy transfe	Seillier M (2012)	1
HNRNPH1	3	DDX17	2	affinity chromatography technology	Jeronimo C (2007)	1
UBC	7	HNRNPH1	3	affinity chromatography technology	Matsumoto M (2005)	1
ATG13	0	APP	1	pull down	Olah J (2011)	1
MAP1LC3A	0	HNRNPU	12	affinity chromatography technology	Wang BS (2013)	1
SNCA	0	TUBB	3	affinity chromatography technology	Alim MA (2002)	1
HADHA	3	HADHB	4	biochemical, biochemical, affinity chromatography technology	Havugimana PC (2012), Wan C (2015), Huttlin EL (2017)	3
MAP1LC3A	0	SNCA	0	imaging technique	Schwarz L (2012)	1
ULK1	8	ATG13	0	enzymatic study, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, enzymatic study, affinity chromatography technology	Dunlop EA (2011), Nazio F (2013), Nazio F (2013), Hosokawa N (2009), Li J (2015), Dunlop EA (2014), Rui YN (2015)	7
PIAS4	5	MAP1LC3A	0	two hybrid	Goehler H (2004)	1
MAP1LC3A	0	ATG4B	1	affinity chromatography technology, x-ray crystallography, enzymatic study, enzymatic study	Behrends C (2010), Satoo K (2009), Betin VM (2009), Betin VM (2009)	4
MAP1LC3B	1	CLINT1	1	affinity chromatography technology	Behrends C (2010)	1
TOLLIP	3	SQSTM1	0	affinity chromatography technology, affinity chromatography technology	Lu K (2014), Jongsma ML (2016)	2
MAP1LC3A	0	BCL10	0	affinity chromatography technology, affinity chromatography technology	Paul S (2012), Paul S (2012)	2
MAP1LC3A	0	RAB3GAP1	5	affinity chromatography technology	Behrends C (2010)	1
MAP1LC3A	0	TBC1D9	3	affinity chromatography technology, pull down	Popovic D (2012), Popovic D (2012)	2
PINK1	2	MAP1B	5	affinity chromatography technology	Imai Y (2010)	1
GABARAPL1	0	TMEM160	0	affinity chromatography technology	Behrends C (2010)	1
CLINT1	1	CLTC	12	pull down, pull down, affinity chromatography technology	Kalthoff C (2002), Mills IG (2003), Hein MY (2015)	3
MAP1LC3A	0	TBC1D17	2	affinity chromatography technology, pull down	Popovic D (2012), Popovic D (2012)	2
TP53INP1	0	MAP1LC3A	0	affinity chromatography technology, fluorescent resonance energy transfe	Seillier M (2012), Seillier M (2012)	2
ATG7	2	APP	1	pull down	Olah J (2011)	1
PSMD4	1	UBQLN4	2	pull down, affinity chromatography technology, affinity chromatography technology	Riley BE (2004), Li X (2008), Su V (2013)	3
TBC1D9	3	TBC1D9B	4	affinity chromatography technology	Huttlin EL (2017)	1
VCP	6	RAB3GAP2	7	affinity chromatography technology	Yu CC (2013)	1
MAP1LC3A	0	ULK1	8	affinity chromatography technology	Alemu EA (2012)	1
ATG101	1	HADHA	3	affinity chromatography technology	Behrends C (2010)	1
EGFR	5	SERBP1	2	affinity chromatography technology	Yao Z (2017)	1
MAP1LC3A	0	TBC1D5	0	affinity chromatography technology, pull down, pull down	Popovic D (2012), Popovic D (2012), Popovic D (2012)	3
HSPA5	0	HSPA1A	0	biochemical, biochemical, affinity chromatography technology	Havugimana PC (2012), Kristensen AR (2012), Hein MY (2015)	3
STK4	1	MAP1B	5	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Behrends C (2010), Varjosalo M (2013), Hauri S (2013)	3
MDM2	2	RASSF5	2	two hybrid, affinity chromatography technology, affinity chromatography technology	Lee D (2012), Lee D (2012), Lee D (2012)	3
UBQLN4	2	UBC	7	pull down	Su V (2010)	1
HSPA5	0	SQSTM1	0	unspecified method, pull down	Cha-Molstad H (2015), Cha-Molstad H (2015)	2
HTT	14	RPL4	4	affinity chromatography technology, affinity chromatography technology	Suter B (2013), Suter B (2013)	2
UBC	7	UBQLN1	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, pull down, affinity chromatography technology, pull down, two hybrid, pull down, two hybrid, pull down, pull down, affinity chromatography technology, pull down, pull down, affinity chromatography technology	Matsumoto M (2005), Ko HS (2004), Ko HS (2004), Sokratous K (2012), Raasi S (2005), Raasi S (2005), Massey LK (2004), Ko HS (2004), Ko HS (2004), Rolland T (2014), Castaneda CA (2013), Nakayasu ES (2013), Nakayasu ES (2013), Kristariyanto YA (2015), Kristariyanto YA (2015), Kurlawala Z (2017)	16
LGALS3	0	MAP1LC3A	0	imaging technique	Chen X (2014)	1
UBC	7	TMEM160	0	pull down	Nathan JA (2013)	1
SNCA	0	UBC	7	fluorescent resonance energy transfe, affinity chromatography technology	Sharma N (2001), Nemes Z (2009)	2
UBC	7	DDX17	2	affinity chromatography technology	Matsumoto M (2005)	1
PRKAG2	5	MAP1A	1	affinity chromatography technology	Behrends C (2010)	1
HTT	14	PRPF40A	5	two hybrid, pull down, two hybrid	Faber PW (1998), Faber PW (1998), Goehler H (2004)	3
RTKN	0	MAP1LC3A	0	pull down	Baisamy L (2009)	1
HTT	14	OPTN	1	two hybrid, two hybrid, pull down, affinity chromatography technology, two hybrid	Faber PW (1998), Hattula K (2001), Hattula K (2001), Hattula K (2001), Suter B (2013)	5
MAP1LC3B	1	STK3	1	affinity chromatography technology	Behrends C (2010)	1
OPTN	1	UBC	7	affinity chromatography technology, pull down, pull down, pull down, two hybrid, pull down, pull down, pull down, pull down, pull down, pull down, pull down, enzymatic study, pull down, pull down, pull down, pull down, pull down	Wild P (2011), Fenner BJ (2009), Zhu G (2007), Zhu G (2007), Wagner S (2008), Gleason CE (2011), Nagabhushana A (2011), Korac J (2012), Wild P (2011), Tumbarello DA (2015), Heo JM (2015), Ordureau A (2015), Richter B (2016), Richter B (2016), Nakazawa S (2016), Zhang X (2017), Kliza K (2017), Bansal M (2018)	18
APP	1	KEAP1	0	affinity chromatography technology	Huttlin EL (2017)	1
VCP	6	HSPA1A	0	affinity chromatography technology	Yu CC (2013)	1
HTT	14	NBR1	0	affinity chromatography technology	Filimonenko M (2010)	1
MAP1LC3A	0	RAB3GAP2	7	affinity chromatography technology	Behrends C (2010)	1
MAP1LC3A	0	RETREG3	4	two hybrid	Rolland T (2014)	1
OPTN	1	SQSTM1	0	affinity chromatography technology, pull down	Liu Z (2014), Liu Z (2014)	2
GABARAPL1	0	TRIM21	0	pull down	Kimura T (2015)	1
GABARAPL1	0	RETREG3	4	two hybrid	Rolland T (2014)	1
UBQLN1	1	PSMD4	1	pull down, pull down, affinity chromatography technology, x-ray crystallography, affinity chromatography technology, pull down, pull down, two hybrid, affinity chromatography technology, affinity chromatography technology	Fallon L (2006), Heir R (2006), Ko HS (2004), Walters KJ (2002), Fatimababy AS (2010), Fatimababy AS (2010), Ko HS (2004), Ko HS (2004), Kurlawala Z (2017), Kurlawala Z (2017)	10
CLU	1	MAP1LC3A	0	affinity chromatography technology	Zhang F (2014)	1
CALCOCO2	0	GABARAPL1	0	two hybrid, two hybrid, affinity chromatography technology	Rual JF (2005), Rolland T (2014), Verlhac P (2015)	3
EGFR	5	CAV1	0	affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, two hybrid, protein complementation assay, affinity chromatography technology, pull down, biochemical	Couet J (1997), Couet J (1997), Khan EM (2006), Feldman R (2009), Hua H (2003), Wu SL (2006), Wu SL (2006), Kotlyar M (2015), Petschnigg J (2014), Park WY (2000), Abulrob A (2004), Abulrob A (2004)	12
MAP1LC3A	0	MAP1B	5	affinity chromatography technology	Behrends C (2010)	1
UBQLN4	2	PRPF40A	5	two hybrid, two hybrid	Lim J (2006), Colland F (2004)	2
MAP1LC3B	1	ULK1	8	affinity chromatography technology	Alemu EA (2012)	1
STK3	1	STK4	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, bioid, affinity chromatography technology, bioid, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, fluorescent resonance energy transfe	Behrends C (2010), Behrends C (2010), Couzens AL (2013), Couzens AL (2013), Couzens AL (2013), Couzens AL (2013), Varjosalo M (2013), Varjosalo M (2013), Hauri S (2013), Hauri S (2013), Wan C (2015), Ivanov AA (2017)	12
IPO5	0	CLTC	12	biochemical	Wan C (2015)	1
AKAP13	11	MAP1LC3A	0	two hybrid, pull down, affinity chromatography technology, pull down	Baisamy L (2009), Baisamy L (2009), Baisamy L (2009), Baisamy L (2009)	4
UBC	7	HSPA5	0	pull down	Nathan JA (2013)	1
TOLLIP	3	NBR1	0	affinity chromatography technology	Lu K (2014)	1
MDM2	2	DDX5	2	affinity chromatography technology	Okoro DR (2013)	1
RASSF5	2	MAP1S	3	affinity chromatography technology, two hybrid, affinity chromatography technology	Behrends C (2010), Rolland T (2014), Hauri S (2013)	3
DVL2	5	SQSTM1	0	affinity chromatography technology, imaging technique, affinity chromatography technology	Zhang Y (2011), Zhang Y (2011), Geng Y (2014)	3
VCP	6	HSPA5	0	affinity chromatography technology	Yu CC (2013)	1
MATR3	2	SAFB2	3	affinity chromatography technology	Hein MY (2015)	1
MAP1LC3A	0	TBC1D10B	4	affinity chromatography technology, pull down	Popovic D (2012), Popovic D (2012)	2
MAP1LC3A	0	MAP1A	1	affinity chromatography technology	Behrends C (2010)	1
UBC	7	MATR3	2	affinity chromatography technology	Matsumoto M (2005)	1
GABARAPL1	0	WDFY3	17	affinity chromatography technology, pull down	Lystad AH (2014), Lystad AH (2014)	2
UBC	7	HADHB	4	affinity chromatography technology	Matsumoto M (2005)	1
VCP	6	NIPSNAP1	3	affinity chromatography technology	Fogeron ML (2013)	1
MATR3	2	HNRNPU	12	biochemical	Wan C (2015)	1
HNRNPU	12	SERBP1	2	affinity chromatography technology	Hein MY (2015)	1
ATG4B	1	GABARAPL1	0	affinity chromatography technology, affinity chromatography technology, enzymatic study, enzymatic study, enzymatic study	Behrends C (2010), Behrends C (2010), Tanida I (2006), Betin VM (2009), Betin VM (2009)	5
MAP1LC3A	0	CLINT1	1	affinity chromatography technology	Behrends C (2010)	1
MAP1LC3B	1	NIPSNAP2	1	affinity chromatography technology	Behrends C (2010)	1
EGFR	5	UBC	7	affinity chromatography technology, affinity chromatography technology	Tong J (2009), Bishop N (2002)	2
SRPK1	2	APP	1	pull down	Olah J (2011)	1
MAP1LC3A	0	PIK3C2A	7	affinity chromatography technology, affinity chromatography technology	Behrends C (2010), Behrends C (2010)	2
MAP1LC3A	0	FUNDC1	0	two hybrid	Rolland T (2014)	1
PINK1	2	SNCA	0	affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology	Um JW (2009), Um JW (2009), Szargel R (2016), Szargel R (2016)	4
UBQLN4	2	HSPA5	0	two hybrid, affinity chromatography technology	Matsuda M (2001), Hein MY (2015)	2
SAFB	3	HNRNPU	12	biochemical	Wan C (2015)	1
ATG3	4	MAP1S	3	affinity chromatography technology	Huttlin EL (2017)	1
MAP1LC3A	0	HNRNPH1	3	affinity chromatography technology	Wang BS (2013)	1
CASP8	1	UBC	7	pull down	Bellail AC (2012)	1
MAP1LC3A	0	TBC1D7	1	affinity chromatography technology, pull down	Popovic D (2012), Popovic D (2012)	2
STK3	1	ATG4B	1	affinity chromatography technology	Behrends C (2010)	1
PIK3C2A	7	ATG7	2	affinity chromatography technology	Behrends C (2010)	1
GABARAPL1	0	TBC1D1	11	affinity chromatography technology, pull down	Popovic D (2012), Popovic D (2012)	2
MAP1LC3B	1	TBC1D9	3	two hybrid	Popovic D (2012)	1
MAP1LC3A	0	GABARAPL1	0	imaging technique	Tanida I (2006)	1
APP	1	CLU	1	pull down, pull down, fluorescent resonance energy transfe, affinity chromatography technology	Hammad SM (1997), Ghiso J (1993), Chen P (2013), Chen P (2013)	4
WDFY3	17	MAP1LC3A	0	affinity chromatography technology, affinity chromatography technology	Clausen TH (2010), Wang N (2013)	2
EGFR	5	CLTA	1	affinity chromatography technology, affinity chromatography technology	Wu SL (2006), Wu SL (2006)	2
MAP1LC3A	0	RABGAP1	2	affinity chromatography technology, pull down	Popovic D (2012), Popovic D (2012)	2
VCP	6	TBC1D10B	4	affinity chromatography technology	Yu CC (2013)	1
EGFR	5	IPO5	0	affinity chromatography technology	Foerster S (2013)	1
TBC1D9B	4	APP	1	pull down	Olah J (2011)	1
CAV1	0	SNCA	0	pull down	Madeira A (2011)	1
SQSTM1	0	NIPSNAP1	3	affinity chromatography technology	Behrends C (2010)	1
TNIP1	1	MAP1LC3A	0	two hybrid	Rolland T (2014)	1
MAP1LC3A	0	ATG101	1	two hybrid	Fujita N (2013)	1
NOTCH1	25	APP	1	genetic interference, affinity chromatography technology	Kim SY (2007), Kim SY (2007)	2
MAP1LC3A	0	HADHB	4	affinity chromatography technology	Behrends C (2010)	1
ATG7	2	GABARAPL1	0	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Behrends C (2010), Behrends C (2010), Tanida I (2006)	3
EPRS	2	TUBB	3	biochemical	Havugimana PC (2012)	1
MAP1LC3A	0	TBC1D1	11	affinity chromatography technology, pull down	Popovic D (2012), Popovic D (2012)	2
MAP1LC3A	0	NOTCH1	25	affinity chromatography technology	Ahn JS (2016)	1
GABARAPL1	0	TBC1D10B	4	affinity chromatography technology, pull down	Popovic D (2012), Popovic D (2012)	2
TUBB	3	APP	1	pull down	Olah J (2011)	1
MAP1LC3A	0	CLTCL1	4	affinity chromatography technology	Wang BS (2013)	1
GABARAPL1	0	CLINT1	1	affinity chromatography technology	Behrends C (2010)	1
GABARAPL1	0	RABGAP1	2	affinity chromatography technology, affinity chromatography technology, pull down	Behrends C (2010), Popovic D (2012), Popovic D (2012)	3
MAP1LC3A	0	NIPSNAP1	3	affinity chromatography technology	Behrends C (2010)	1
APP	1	CAV1	0	biochemical, unspecified method	Ikezu T (1998), Ikezu T (1998)	2
HTT	14	SQSTM1	0	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Filimonenko M (2010), Zhou L (2014), Rui YN (2015), Rui YN (2015)	4
VCP	6	MAP1LC3A	0	imaging technique	Wang Y (2011)	1
EGFR	5	MATR3	2	protein complementation assay	Deribe YL (2009)	1
CLTC	12	HSPA1A	0	affinity chromatography technology	Hein MY (2015)	1
EGFR	5	PDCD6IP	3	affinity chromatography technology, affinity chromatography technology, two hybrid, protein complementation assay, affinity chromatography technology	Schmidt MH (2004), Schmidt MH (2003), Kotlyar M (2015), Petschnigg J (2014), Petschnigg J (2014)	5
HNRNPM	1	PRPF40A	5	biochemical	Havugimana PC (2012)	1
GABARAPL1	0	TBC1D9	3	affinity chromatography technology, pull down	Popovic D (2012), Popovic D (2012)	2
STK3	1	MAP1B	5	affinity chromatography technology, affinity chromatography technology	Varjosalo M (2013), Hauri S (2013)	2
MDM2	2	APP	1	pull down	Miyamoto-Sato E (2010)	1
RTKN	0	APP	1	pull down	Olah J (2011)	1
VCP	6	MDM2	2	affinity chromatography technology, affinity chromatography technology	Yu CC (2013), Okoro DR (2013)	2
SQSTM1	0	WDFY3	17	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Hocking LJ (2010), Clausen TH (2010), Clausen TH (2010), Isakson P (2013)	4
PSMD4	1	HADHA	3	affinity chromatography technology	Weekes J (2003)	1
EGFR	5	RPL4	4	affinity chromatography technology	Tong J (2014)	1
EGFR	5	HNRNPH1	3	affinity chromatography technology, affinity chromatography technology	Tong J (2008), Li J (2013)	2
MAP1LC3A	0	RRBP1	7	affinity chromatography technology	Wang BS (2013)	1
MAP1LC3A	0	IPO5	0	affinity chromatography technology	Wang BS (2013)	1
DCAF1	5	UBC	7	affinity chromatography technology	Li W (2010)	1
MAP1LC3B	1	HADHB	4	affinity chromatography technology	Behrends C (2010)	1
GABARAPL1	0	KXD1	1	two hybrid	Yu H (2011)	1
GPSM1	1	MAP1LC3A	0	affinity chromatography technology, affinity chromatography technology, pull down	Garcia-Marcos M (2011), Garcia-Marcos M (2011), Garcia-Marcos M (2011)	3
NBR1	0	MAP1LC3B	1	affinity chromatography technology, pull down	Kirkin V (2009), Nicot AS (2014)	2
KXD1	1	MAP1LC3A	0	two hybrid	Rolland T (2014)	1
MAP1LC3B	1	OPTN	1	imaging technique, unspecified method, pull down, x-ray crystallography, affinity chromatography technology, pull down	Wild P (2011), Wild P (2011), Rogov VV (2013), Rogov VV (2013), Rogov VV (2013), Wild P (2011)	6
STK4	1	MAP1S	3	bioid, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Couzens AL (2013), Varjosalo M (2013), Hauri S (2013), Hauri S (2013)	4
SQSTM1	0	ATG7	2	affinity chromatography technology	Tanji K (2012)	1
SQSTM1	0	TRIM21	0	affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, enzymatic study, affinity chromatography technology	Kim JY (2009), Kim JY (2009), Kimura T (2015), Milan E (2015), Pan JA (2016), Pan JA (2016)	6
VCP	6	TRIM21	0	affinity chromatography technology	Yu CC (2013)	1
MDM2	2	DDX17	2	affinity chromatography technology	Shin S (2007)	1
MDM2	2	NOTCH1	25	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, enzymatic study	Lim SO (2011), Lim SO (2011), Pettersson S (2012), Pettersson S (2012), Pettersson S (2012)	5
MAP1LC3A	0	ATG7	2	affinity chromatography technology, affinity chromatography technology, pull down, enzymatic study, affinity chromatography technology	Behrends C (2010), Tanida I (2001), Sou YS (2006), Sou YS (2006), Wan W (2017)	5
RPL4	4	MDM2	2	affinity chromatography technology, affinity chromatography technology, pull down	He X (2016), He X (2016), He X (2016)	3
UBC	7	CLU	1	pull down	Zoubeidi A (2010)	1
UBQLN4	2	UBQLN1	1	two hybrid, biochemical, affinity chromatography technology, affinity chromatography technology	Lim J (2006), Havugimana PC (2012), Lee DY (2013), Lee DY (2013)	4
MATR3	2	HNRNPM	1	affinity chromatography technology	Hein MY (2015)	1
CLTCL1	4	EPRS	2	biochemical	Wan C (2015)	1
MAP1LC3B	1	FYCO1	6	affinity chromatography technology, unspecified method	Behrends C (2010), Alemu EA (2012)	2
UBC	7	PDCD6IP	3	pull down	Zhang X (2017)	1
SQSTM1	0	GABARAPL1	0	two hybrid, affinity chromatography technology, two hybrid, affinity chromatography technology, affinity chromatography technology, imaging technique, two hybrid	Rual JF (2005), Behrends C (2010), Wild P (2011), Kirkin V (2009), Zhang Y (2011), Zhang Y (2011), Rolland T (2014)	7
MAP1LC3A	0	PINK1	2	affinity chromatography technology, affinity chromatography technology	Kawajiri S (2010), Kawajiri S (2010)	2
DDX17	2	APP	1	pull down	Olah J (2011)	1
GABARAPL1	0	TBC1D25	3	affinity chromatography technology, pull down, affinity chromatography technology	Popovic D (2012), Popovic D (2012), Huttlin EL (2017)	3
MAP1LC3A	0	NSMAF	5	affinity chromatography technology	Behrends C (2010)	1
MAP1LC3A	0	STK3	1	affinity chromatography technology	Behrends C (2010)	1
MAP1LC3A	0	EPRS	2	affinity chromatography technology	Wang BS (2013)	1
CLU	1	KEAP1	0	two hybrid	Wang J (2011)	1
DDX17	2	DDX5	2	affinity chromatography technology, affinity chromatography technology, biochemical, two hybrid, two hybrid, biochemical, affinity chromatography technology	Mooney SM (2010), Mooney SM (2010), Havugimana PC (2012), Hegele A (2012), Hegele A (2012), Kristensen AR (2012), Huttlin EL (2017)	7
MAP1LC3A	0	DDX5	2	affinity chromatography technology	Wang BS (2013)	1
GABARAPL1	0	TBC1D7	1	affinity chromatography technology, pull down	Popovic D (2012), Popovic D (2012)	2
NBR1	0	GABARAPL1	0	affinity chromatography technology	Kirkin V (2009)	1
HSPA5	0	HNRNPH1	3	affinity chromatography technology	Li J (2013)	1
MAP1LC3B	1	MAP1LC3A	0	affinity chromatography technology	Behrends C (2010)	1
MATR3	2	SAFB	3	affinity chromatography technology	Hein MY (2015)	1
MAP1LC3A	0	RPL4	4	affinity chromatography technology	Wang BS (2013)	1
MAP1LC3A	0	BNIP3L	1	affinity chromatography technology, affinity chromatography technology, pull down	Novak I (2010), Novak I (2010), Novak I (2010)	3
MAP1LC3B	1	ATG13	0	affinity chromatography technology	Alemu EA (2012)	1
OPTN	1	PIAS4	5	two hybrid	Wang J (2011)	1
EGFR	5	EPRS	2	affinity chromatography technology	Foerster S (2013)	1
MAP1LC3A	0	ATG13	0	affinity chromatography technology, two hybrid	Alemu EA (2012), Fujita N (2013)	2
MAP1LC3A	0	TBC1D25	3	affinity chromatography technology, pull down	Popovic D (2012), Popovic D (2012)	2
MAP1LC3A	0	RDH12	0	two hybrid	Wang J (2011)	1