PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000463670	[[156252725, 156252856], [156254974, 156255058], [156255315, 156255774], [156256050, 156256264], [156261175, 156262234]]	None
ENST00000295694	[[156252738, 156252856], [156254974, 156255774], [156256050, 156256264], [156261175, 156262234]]	[[156255017, 156255774], [156256050, 156256264], [156261175, 156261389]]
ENST00000357501	[[156252743, 156252856], [156254974, 156255058], [156256050, 156256264], [156261175, 156261739]]	[[156255017, 156255058], [156256050, 156256264], [156261175, 156261448]]
ENST00000405535	[[156254069, 156254197], [156254974, 156255774], [156256050, 156256264], [156261175, 156262234]]	[[156255017, 156255774], [156256050, 156256264], [156261175, 156261389]]
ENST00000495881	[[156254104, 156254197], [156254974, 156256264], [156261175, 156262234]]	None
ENST00000456810	[[156254112, 156254197], [156254974, 156255058], [156256050, 156256264], [156261175, 156261316]]	[[156255017, 156255058], [156256050, 156256264], [156261175, 156261316]]
ENST00000485135	[[156256066, 156256264], [156261175, 156261493], [156262517, 156262976]]	None
NR_026678	[[156252703, 156252856], [156254974, 156255774], [156256050, 156256264], [156261175, 156262234]]	None
NM_032323	[[156254069, 156254197], [156254974, 156255774], [156256050, 156256264], [156261175, 156262234]]	[[156255017, 156255774], [156256050, 156256264], [156261175, 156261389]]

Promoter

Chrom	Start	End	Description
chr1	156252708	156252734	CAGE_peak_1_at_TMEM79_5end
chr1	156254091	156254143	CAGE_peak_2_at_TMEM79_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I156290	156290888	156292947	1.6	[{'connected_gene': 'PAQR6', 'score': 32.84}, {'connected_gene': 'GLMP', 'score': 27.45}, {'connected_gene': 'BGLAP', 'score': 11.29}, {'connected_gene': 'TSACC', 'score': 10.84}, {'connected_gene': 'CCT3', 'score': 10.77}, {'connected_gene': 'MIR9-1', 'score': 9.68}, {'connected_gene': 'C1orf61', 'score': 9.67}, {'connected_gene': 'LAMTOR2', 'score': 9.59}, {'connected_gene': 'UBQLN4', 'score': 9.59}, {'connected_gene': 'KHDC4', 'score': 9.34}, {'connected_gene': 'RXFP4', 'score': 9.34}, {'connected_gene': 'TMEM79', 'score': 0.44}]
chr1	GH01I156281	156281041	156285474	2.61	[{'connected_gene': 'SMG5', 'score': 573.55}, {'connected_gene': 'TMEM79', 'score': 550.77}, {'connected_gene': 'GLMP', 'score': 27.07}, {'connected_gene': 'KHDC4', 'score': 22.27}, {'connected_gene': 'GON4L', 'score': 18.93}, {'connected_gene': 'RRNAD1', 'score': 12.85}, {'connected_gene': 'YY1AP1', 'score': 12.57}, {'connected_gene': 'SLC25A44', 'score': 12.47}, {'connected_gene': 'PAQR6', 'score': 11.81}, {'connected_gene': 'BGLAP', 'score': 11.78}, {'connected_gene': 'ENSG00000271267', 'score': 11.4}, {'connected_gene': 'ENSG00000252236', 'score': 11.1}, {'connected_gene': 'SEMA4A', 'score': 10.86}, {'connected_gene': 'PRCC', 'score': 10.86}, {'connected_gene': 'TSACC', 'score': 10.82}, {'connected_gene': 'CCT3', 'score': 10.77}, {'connected_gene': 'LAMTOR2', 'score': 10.64}, {'connected_gene': 'UBQLN4', 'score': 10.64}, {'connected_gene': 'LOC246784', 'score': 10.51}, {'connected_gene': 'MIR9-1', 'score': 10.1}, {'connected_gene': 'C1orf61', 'score': 10.09}, {'connected_gene': 'RUSC1-AS1', 'score': 10.04}, {'connected_gene': 'RXFP4', 'score': 9.33}, {'connected_gene': 'LMNA', 'score': 1.86}, {'connected_gene': 'ARHGEF2', 'score': 1.82}, {'connected_gene': 'RIT1', 'score': 1.62}]
chr1	GH01I156689	156689001	156694998	1.69	[{'connected_gene': 'ENSG00000237588', 'score': 550.77}, {'connected_gene': 'KHDC4', 'score': 52.09}, {'connected_gene': 'RRNAD1', 'score': 51.4}, {'connected_gene': 'GON4L', 'score': 47.23}, {'connected_gene': 'MSTO2P', 'score': 26.92}, {'connected_gene': 'LOC246784', 'score': 18.67}, {'connected_gene': 'CCT3', 'score': 16.35}, {'connected_gene': 'LOC105371453', 'score': 12.47}, {'connected_gene': 'BCAN', 'score': 12.41}, {'connected_gene': 'ISG20L2', 'score': 11.17}, {'connected_gene': 'PMF1', 'score': 11.04}, {'connected_gene': 'HDGF', 'score': 10.68}, {'connected_gene': 'SSR2', 'score': 10.43}, {'connected_gene': 'PRCC', 'score': 10.31}, {'connected_gene': 'GLMP', 'score': 10.17}, {'connected_gene': 'NAXE', 'score': 9.66}, {'connected_gene': 'CRABP2', 'score': 9.35}, {'connected_gene': 'SLC25A44', 'score': 4.74}, {'connected_gene': 'SMG5', 'score': 4.57}, {'connected_gene': 'TMEM79', 'score': 1.4}]