PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000238831	[[32502978, 32503303], [32515551, 32515705], [32517245, 32517417], [32523302, 32523380], [32526450, 32526564], [32530557, 32541663]]	[[32503224, 32503303], [32515551, 32515705], [32517245, 32517417], [32523302, 32523380], [32526450, 32526564], [32530557, 32530695]]
ENST00000495355	[[32503197, 32503303], [32515551, 32515989]]	None
ENST00000437765	[[32503299, 32503303], [32515551, 32515705], [32523302, 32523380], [32526450, 32526564], [32530557, 32530935]]	[[32503299, 32503303], [32515551, 32515705], [32523302, 32523321]]
ENST00000441084	[[32526511, 32526564], [32532172, 32532431]]	[[32526511, 32526564], [32532172, 32532220]]
NM_032312	[[32502957, 32503303], [32515551, 32515705], [32517245, 32517417], [32523302, 32523380], [32526450, 32526564], [32530557, 32531658]]	[[32503224, 32503303], [32515551, 32515705], [32517245, 32517417], [32523302, 32523380], [32526450, 32526564], [32530557, 32530695]]

Promoter

Chrom	Start	End	Description
chr2	32502952	32503025	CAGE_peak_1_at_YIPF4_5end
chr2	32503279	32503295	CAGE_peak_6_at_YIPF4_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr2	GH02I032277	32277072	32279201	2.03	[{'connected_gene': 'YIPF4', 'score': 550.77}, {'connected_gene': 'SLC30A6', 'score': 21.45}, {'connected_gene': 'BIRC6', 'score': 19.96}, {'connected_gene': 'TTC27', 'score': 15.14}, {'connected_gene': 'DDX50P1', 'score': 14.91}, {'connected_gene': 'RNU6-647P', 'score': 10.56}, {'connected_gene': 'NLRC4', 'score': 4.71}, {'connected_gene': 'ENSG00000272754', 'score': 0.26}]
chr2	GH02I032279	32279601	32279800	0.2	[{'connected_gene': 'YIPF4', 'score': 550.77}, {'connected_gene': 'SLC30A6', 'score': 9.69}, {'connected_gene': 'ENSG00000272754', 'score': 0.26}]
chr2	GH02I032328	32328171	32330420	0.91	[{'connected_gene': 'YIPF4', 'score': 13.04}, {'connected_gene': 'TTC27', 'score': 7.25}, {'connected_gene': 'ENSG00000272754', 'score': 0.44}, {'connected_gene': 'BIRC6', 'score': 0.31}]
chr2	GH02I031381	31381455	31386814	1.15	[{'connected_gene': 'XDH', 'score': 10.03}, {'connected_gene': 'YIPF4', 'score': 4.17}, {'connected_gene': 'GC02M031380', 'score': 0.77}, {'connected_gene': 'PIR52882', 'score': 0.77}, {'connected_gene': 'GC02M031395', 'score': 0.34}]
chr2	GH02I032266	32266401	32266600	0.2	[{'connected_gene': 'NLRC4', 'score': 550.77}, {'connected_gene': 'YIPF4', 'score': 0.39}]
chr2	GH02I032288	32288202	32290600	1.07	[{'connected_gene': 'BIRC6', 'score': 29.2}, {'connected_gene': 'NLRC4', 'score': 16.74}, {'connected_gene': 'DDX50P1', 'score': 16.55}, {'connected_gene': 'TTC27', 'score': 15.83}, {'connected_gene': 'SLC30A6', 'score': 11.91}, {'connected_gene': 'YIPF4', 'score': 11.18}, {'connected_gene': 'RNU6-647P', 'score': 10.87}, {'connected_gene': 'MIR558', 'score': 9.72}, {'connected_gene': 'ENSG00000272754', 'score': 0.29}]
chr2	GH02I032824	32824716	32825487	0.7	[{'connected_gene': 'LINC00486', 'score': 550.77}, {'connected_gene': 'BIRC6', 'score': 18.05}, {'connected_gene': 'YIPF4', 'score': 11.69}, {'connected_gene': 'GC02M032770', 'score': 0.23}]
chr2	GH02I032284	32284201	32284801	0.31	[{'connected_gene': 'RNU6-647P', 'score': 10.47}, {'connected_gene': 'BIRC6', 'score': 10.08}, {'connected_gene': 'TTC27', 'score': 4.75}, {'connected_gene': 'YIPF4', 'score': 0.44}, {'connected_gene': 'ENSG00000272754', 'score': 0.28}]
chr2	GH02I031378	31378148	31379764	0.8	[{'connected_gene': 'GC02M031380', 'score': 550.77}, {'connected_gene': 'PIR52882', 'score': 550.77}, {'connected_gene': 'YIPF4', 'score': 4.52}, {'connected_gene': 'XDH', 'score': 0.28}, {'connected_gene': 'GC02P031291', 'score': 0.17}]