PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000288607	[[1606965, 1607486], [1608759, 1609629]]	[[1607333, 1607486], [1608759, 1608975]]
ENST00000404674	[[1606986, 1607486], [1608759, 1608996], [1609644, 1609681]]	[[1607333, 1607486], [1608759, 1608975]]
ENST00000252329	[[1607248, 1607486], [1608759, 1608996], [1610109, 1610641]]	[[1607333, 1607486], [1608759, 1608975]]
NM_032302	[[1606967, 1607486], [1608759, 1609629]]	[[1607333, 1607486], [1608759, 1608975]]
NM_001134340	[[1606967, 1607486], [1608759, 1608996], [1609644, 1609668]]	[[1607333, 1607486], [1608759, 1608975]]

Promoter

Chrom	Start	End	Description
chr7	1609591	1609690	CAGE_peak_1_at_PSMG3_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr7	GH07I002038	2037026	2037115	0.49	[{'connected_gene': 'PSMG3', 'score': 5.89}, {'connected_gene': 'GC07M001999', 'score': 0.28}, {'connected_gene': 'GC07M002088', 'score': 0.22}, {'connected_gene': 'MAD1L1', 'score': 0.08}]
chr7	GH07I002023	2023932	2024813	0.79	[{'connected_gene': 'PSMG3', 'score': 5.89}, {'connected_gene': 'NUDT1', 'score': 5.19}, {'connected_gene': 'GC07M001999', 'score': 0.34}, {'connected_gene': 'GC07M002088', 'score': 0.2}, {'connected_gene': 'MAD1L1', 'score': 0.08}]
chr7	GH07I001451	1451422	1452088	0.2	[{'connected_gene': 'PSMG3', 'score': 11.21}, {'connected_gene': 'PSMG3-AS1', 'score': 11.21}, {'connected_gene': 'MICALL2', 'score': 0.44}, {'connected_gene': 'ENSG00000233082', 'score': 0.09}]
chr7	GH07I001580	1579845	1579994	0.8	[{'connected_gene': 'MAFK', 'score': 12.27}, {'connected_gene': 'EIF3B', 'score': 9.71}, {'connected_gene': 'PSMG3', 'score': 0.44}, {'connected_gene': 'PSMG3-AS1', 'score': 0.44}, {'connected_gene': 'LOC105375122', 'score': 0.39}]
chr7	GH07I001579	1579400	1579801	0.96	[{'connected_gene': 'MAFK', 'score': 12.27}, {'connected_gene': 'PSMG3', 'score': 0.44}, {'connected_gene': 'PSMG3-AS1', 'score': 0.44}, {'connected_gene': 'LOC105375122', 'score': 0.39}]
chr7	GH07I001575	1575717	1577709	0.92	[{'connected_gene': 'MAFK', 'score': 13.19}, {'connected_gene': 'BRAT1', 'score': 12.53}, {'connected_gene': 'DNAAF5', 'score': 11.6}, {'connected_gene': 'ENSG00000231927', 'score': 11.0}, {'connected_gene': 'INTS1', 'score': 10.98}, {'connected_gene': 'EIF3B', 'score': 10.93}, {'connected_gene': 'SUN1', 'score': 9.93}, {'connected_gene': 'PSMG3-AS1', 'score': 8.97}, {'connected_gene': 'ELFN1', 'score': 4.35}, {'connected_gene': 'PSMG3', 'score': 0.44}, {'connected_gene': 'GC07P001567', 'score': 0.44}, {'connected_gene': 'LOC105375122', 'score': 0.37}]
chr7	GH07I002018	2018002	2021159	1.42	[{'connected_gene': 'MRM2', 'score': 10.43}, {'connected_gene': 'PSMG3', 'score': 6.14}, {'connected_gene': 'NUDT1', 'score': 5.14}, {'connected_gene': 'SNX8', 'score': 3.42}, {'connected_gene': 'MAFK', 'score': 3.34}, {'connected_gene': 'GC07M001999', 'score': 0.37}, {'connected_gene': 'GC07M002088', 'score': 0.19}, {'connected_gene': 'MAD1L1', 'score': 0.08}]
chr7	GH07I001519	1519719	1522164	1.68	[{'connected_gene': 'INTS1', 'score': 19.16}, {'connected_gene': 'TMEM184A', 'score': 3.1}, {'connected_gene': 'MAFK', 'score': 2.31}, {'connected_gene': 'PSMG3', 'score': 2.25}, {'connected_gene': 'C7orf50', 'score': 1.38}, {'connected_gene': 'ENSG00000231927', 'score': 0.39}]
chr7	GH07I001562	1562085	1563309	0.52	[{'connected_gene': 'TMEM184A', 'score': 550.77}, {'connected_gene': 'PSMG3-AS1', 'score': 10.23}, {'connected_gene': 'PSMG3', 'score': 8.39}, {'connected_gene': 'NUDT1', 'score': 5.32}, {'connected_gene': 'GC07P001567', 'score': 0.77}]
chr7	GH07I001449	1449796	1451396	0.31	[{'connected_gene': 'PSMG3-AS1', 'score': 11.21}, {'connected_gene': 'PSMG3', 'score': 11.21}, {'connected_gene': 'MICALL2', 'score': 0.44}, {'connected_gene': 'ENSG00000233082', 'score': 0.09}]
chr7	GH07I001564	1564015	1565545	0.77	[{'connected_gene': 'PSMG3-AS1', 'score': 10.8}, {'connected_gene': 'PSMG3', 'score': 8.26}, {'connected_gene': 'TMEM184A', 'score': 0.77}, {'connected_gene': 'GC07P001567', 'score': 0.77}]
chr7	GH07I001565	1565972	1572616	2.28	[{'connected_gene': 'PSMG3-AS1', 'score': 561.22}, {'connected_gene': 'PSMG3', 'score': 556.9}, {'connected_gene': 'GC07P001567', 'score': 550.77}]
chr7	GH07I001591	1591401	1592400	0.31	[{'connected_gene': 'LOC105375122', 'score': 550.77}, {'connected_gene': 'ENSG00000205971', 'score': 11.25}, {'connected_gene': 'ENSG00000234977', 'score': 11.25}, {'connected_gene': 'PSMG3-AS1', 'score': 5.89}, {'connected_gene': 'PSMG3', 'score': 0.34}]
chr7	GH07I000608	608002	611799	1.6	[{'connected_gene': 'LOC101926963', 'score': 8.14}, {'connected_gene': 'PSMG3', 'score': 5.2}, {'connected_gene': 'COX19', 'score': 2.27}, {'connected_gene': 'LOC105375119', 'score': 0.77}, {'connected_gene': 'PRKAR1B', 'score': 0.13}]
chr7	GH07I000600	600529	606171	1.42	[{'connected_gene': 'LOC101926963', 'score': 563.27}, {'connected_gene': 'PSMG3', 'score': 4.93}, {'connected_gene': 'LOC105375119', 'score': 0.39}, {'connected_gene': 'PRKAR1B', 'score': 0.13}]
chr7	GH07I001638	1638465	1638574	0.31	[{'connected_gene': 'ENSG00000234977', 'score': 12.03}, {'connected_gene': 'ENSG00000205971', 'score': 12.02}, {'connected_gene': 'PSMG3', 'score': 11.18}, {'connected_gene': 'PSMG3-AS1', 'score': 11.18}, {'connected_gene': 'PIR45811', 'score': 0.44}, {'connected_gene': 'LOC105375303', 'score': 0.34}]