PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000300030	[[64364757, 64365227], [64367690, 64367736], [64373300, 64373350], [64380885, 64381050], [64385843, 64386217]]	[[64365129, 64365227], [64367690, 64367736], [64373300, 64373350], [64380885, 64381050], [64385843, 64385967]]
ENST00000558779	[[64364763, 64365227], [64365986, 64366016]]	None
ENST00000380290	[[64364776, 64365227], [64367690, 64367736], [64380885, 64381050], [64385843, 64386007]]	[[64367716, 64367736], [64380885, 64381050], [64385843, 64385967]]
ENST00000559705	[[64365179, 64365227], [64367690, 64367736], [64373300, 64373350], [64380885, 64381050], [64382396, 64382514], [64385843, 64386052]]	[[64382428, 64382514], [64385843, 64385967]]
ENST00000557835	[[64366516, 64367736], [64380885, 64381050], [64385843, 64385994]]	[[64367716, 64367736], [64380885, 64381050], [64385843, 64385967]]
ENST00000559950	[[64367603, 64367736], [64373300, 64373350], [64380885, 64381050], [64385843, 64386056]]	[[64367682, 64367736], [64373300, 64373350], [64380885, 64381050], [64385843, 64385967]]
NR_110310	[[64364757, 64365227], [64367690, 64367736], [64373300, 64373350], [64380885, 64381050], [64382396, 64382514], [64385843, 64386207]]	None
NM_032231	[[64364757, 64365227], [64367690, 64367736], [64373300, 64373350], [64380885, 64381050], [64385843, 64386207]]	[[64365129, 64365227], [64367690, 64367736], [64373300, 64373350], [64380885, 64381050], [64385843, 64385967]]
NM_001289108	[[64364757, 64367736], [64380885, 64381050], [64385843, 64386207]]	[[64367716, 64367736], [64380885, 64381050], [64385843, 64385967]]
NM_001014812	[[64364757, 64365227], [64367690, 64367736], [64380885, 64381050], [64385843, 64386207]]	[[64367716, 64367736], [64380885, 64381050], [64385843, 64385967]]

Promoter

Chrom	Start	End	Description
chr15	64385981	64386077	CAGE_peak_1_at_FAM96A_5end
chr15	64386082	64386115	CAGE_peak_2_at_FAM96A_5end
chr15	64386120	64386156	CAGE_peak_3_at_FAM96A_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr15	GH15I064088	64088890	64091955	0.79	[{'connected_gene': 'TRIP4', 'score': 22.3}, {'connected_gene': 'SNX22', 'score': 11.26}, {'connected_gene': 'FAM96A', 'score': 8.33}, {'connected_gene': 'SNX1', 'score': 8.25}, {'connected_gene': 'DAPK2', 'score': 0.37}]
chr15	GH15I064114	64114827	64135523	0.57	[{'connected_gene': 'TRIP4', 'score': 22.95}, {'connected_gene': 'SNX22', 'score': 21.06}, {'connected_gene': 'SNX1', 'score': 20.69}, {'connected_gene': 'DAPK2', 'score': 14.31}, {'connected_gene': 'PPIB', 'score': 12.41}, {'connected_gene': 'FAM96A', 'score': 11.78}, {'connected_gene': 'ENSG00000252774', 'score': 9.27}, {'connected_gene': 'PIF1', 'score': 4.02}, {'connected_gene': 'SPG21', 'score': 4.0}, {'connected_gene': 'GC15M064112', 'score': 0.39}, {'connected_gene': 'ENSG00000201071', 'score': 0.39}, {'connected_gene': 'PIR31329', 'score': 0.37}]
chr15	GH15I064104	64104802	64106000	1.37	[{'connected_gene': 'SNX22', 'score': 11.74}, {'connected_gene': 'PPIB', 'score': 11.43}, {'connected_gene': 'DAPK2', 'score': 10.33}, {'connected_gene': 'FBXL22', 'score': 9.35}, {'connected_gene': 'ENSG00000252774', 'score': 8.75}, {'connected_gene': 'FAM96A', 'score': 8.22}, {'connected_gene': 'SNX1', 'score': 2.45}, {'connected_gene': 'GC15M064112', 'score': 0.44}, {'connected_gene': 'ENSG00000201071', 'score': 0.44}]
chr15	GH15I064092	64092162	64098690	2.33	[{'connected_gene': 'SNX1', 'score': 559.07}, {'connected_gene': 'FAM96A', 'score': 558.15}, {'connected_gene': 'TRIP4', 'score': 56.77}, {'connected_gene': 'CSNK1G1', 'score': 24.55}, {'connected_gene': 'USP3', 'score': 19.87}, {'connected_gene': 'ENSG00000264937', 'score': 18.89}, {'connected_gene': 'USP3-AS1', 'score': 18.15}, {'connected_gene': 'SNX22', 'score': 18.1}, {'connected_gene': 'ZNF609', 'score': 13.58}, {'connected_gene': 'ENSG00000259635', 'score': 11.29}, {'connected_gene': 'SPG21', 'score': 10.18}, {'connected_gene': 'DAPK2', 'score': 10.03}, {'connected_gene': 'MTFMT', 'score': 9.95}, {'connected_gene': 'ENSG00000265967', 'score': 9.79}, {'connected_gene': 'GC15M064112', 'score': 0.37}, {'connected_gene': 'ENSG00000201071', 'score': 0.37}]
chr15	GH15I064741	64741985	64744025	0.38	[{'connected_gene': 'RBPMS2', 'score': 33.89}, {'connected_gene': 'TRIP4', 'score': 32.72}, {'connected_gene': 'PIF1', 'score': 6.73}, {'connected_gene': 'FAM96A', 'score': 3.94}, {'connected_gene': 'MIR1272', 'score': 0.37}, {'connected_gene': 'OAZ2', 'score': 0.28}]
chr15	GH15I064664	64664237	64665639	0.57	[{'connected_gene': 'RBPMS2', 'score': 34.57}, {'connected_gene': 'TRIP4', 'score': 21.85}, {'connected_gene': 'MIR1272', 'score': 10.0}, {'connected_gene': 'ENSG00000252774', 'score': 9.26}, {'connected_gene': 'SNX22', 'score': 9.23}, {'connected_gene': 'PLEKHO2', 'score': 5.85}, {'connected_gene': 'FAM96A', 'score': 3.98}, {'connected_gene': 'GC15P068668', 'score': 0.44}, {'connected_gene': 'ENSG00000207223', 'score': 0.39}, {'connected_gene': 'GC15M064658', 'score': 0.37}, {'connected_gene': 'ZNF609', 'score': 0.08}]
chr15	GH15I064069	64069400	64073465	1.39	[{'connected_gene': 'DAPK2', 'score': 550.77}, {'connected_gene': 'TRIP4', 'score': 43.81}, {'connected_gene': 'ZNF609', 'score': 24.06}, {'connected_gene': 'SNX1', 'score': 19.74}, {'connected_gene': 'ENSG00000264937', 'score': 19.49}, {'connected_gene': 'FAM96A', 'score': 19.0}, {'connected_gene': 'SNX22', 'score': 18.43}, {'connected_gene': 'ENSG00000265967', 'score': 13.03}, {'connected_gene': 'HERC1', 'score': 11.84}, {'connected_gene': 'USP3', 'score': 10.99}, {'connected_gene': 'MTFMT', 'score': 9.95}, {'connected_gene': 'PPIB', 'score': 9.85}, {'connected_gene': 'USP3-AS1', 'score': 9.7}, {'connected_gene': 'FBXL22', 'score': 9.63}, {'connected_gene': 'LOC101928988', 'score': 0.11}]
chr15	GH15I064653	64653882	64654031	0.6	[{'connected_gene': 'ENSG00000207223', 'score': 550.77}, {'connected_gene': 'GC15P068604', 'score': 550.77}, {'connected_gene': 'TRIP4', 'score': 22.95}, {'connected_gene': 'PLEKHO2', 'score': 4.16}, {'connected_gene': 'FAM96A', 'score': 3.98}, {'connected_gene': 'GC15P068668', 'score': 0.37}, {'connected_gene': 'ZNF609', 'score': 0.08}]
chr15	GH15I064110	64110278	64113990	1.17	[{'connected_gene': 'GC15M064112', 'score': 550.77}, {'connected_gene': 'ENSG00000201071', 'score': 550.77}, {'connected_gene': 'TRIP4', 'score': 22.76}, {'connected_gene': 'SNX22', 'score': 11.56}, {'connected_gene': 'PPIB', 'score': 11.16}, {'connected_gene': 'DAPK2', 'score': 10.3}, {'connected_gene': 'FBXL22', 'score': 9.35}, {'connected_gene': 'ENSG00000252774', 'score': 8.76}, {'connected_gene': 'SNX1', 'score': 8.21}, {'connected_gene': 'FAM96A', 'score': 7.79}, {'connected_gene': 'PIR31329', 'score': 0.31}]