PsyMuKB

PPI network (data source: BioGrid)

A gene is determined as “expressed” when its expression values are above the pre-determined cutoff, which is the mean normalized expression(base 2 log of (TPM+1)) +1 in all brain tissue from GTEx v7 or BrainSpan data.

A protein is determined as “expressed” when its expression values are above the pre-determined cutoff, which is the normalized expression (base 10 log of iBAQ intensity) ≥0.5 in at least one brain tissue from ProteomicsDB data. Otherwise, a gene or protein is determined as either with below-cutoff expressions or no available data.

	The queried gene/protein
	The interacting partner is expressed at mRNA-level
	The interacting partner is expressed at protein-level
	The interacting partner is expressed at both mRNA and protein level
	The interacting partner is with either below-cutoff expressions or no expression data at both mRNA and protein level
	The interacting partner is hit by coding DNMs
	Physical interaction between queried gene/protein and its partner
	Physical interaction between two interacting partners

Symbol A	GeneA coding DNM count	Symbol B	GeneB coding DNM count	Interaction detection method	Publication	Evidence
ULK1	8	MTOR	14	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Dunlop EA (2011), Rui YN (2015), Rui YN (2015)	3
SESN2	3	ATG13	0	affinity chromatography technology, affinity chromatography technology	Ro SH (2014), Ro SH (2014)	2
MAP1LC3B	1	FLCN	1	pull down	Dunlop EA (2014)	1
EXOC2	5	RALB	0	two hybrid, affinity chromatography technology, affinity chromatography technology, two hybrid, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Moskalenko S (2003), Simicek M (2013), Simicek M (2013), Simicek M (2013), Simicek M (2013), Bodemann BO (2011), Bodemann BO (2011), Boldt K (2016)	8
ULK1	8	TRIM16	0	enzymatic study, affinity chromatography technology	Chauhan S (2016), Chauhan S (2016)	2
MAP1LC3C	0	ATG16L1	1	affinity chromatography technology	Behrends C (2010)	1
TRAF6	0	ULK1	8	affinity chromatography technology, affinity chromatography technology	Nazio F (2013), Nazio F (2013)	2
CDC37	0	SQSTM1	0	two hybrid, affinity chromatography technology	Vinayagam A (2011), Li J (2013)	2
GABARAP	0	ATG13	0	affinity chromatography technology, unspecified method, two hybrid	Alemu EA (2012), Alemu EA (2012), Fujita N (2013)	3
BECN1	2	EXOC2	5	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Simicek M (2013), Simicek M (2013), Bodemann BO (2011)	3
NEDD4L	3	ULK1	8	affinity chromatography technology, affinity chromatography technology, enzymatic study	Nazio F (2016), Nazio F (2016), Nazio F (2016)	3
CDC37	0	MTOR	14	two hybrid	Vinayagam A (2011)	1
MEFV	3	MAP1LC3A	0	pull down	Kimura T (2015)	1
HTT	14	ULK1	8	affinity chromatography technology, affinity chromatography technology	Rui YN (2015), Rui YN (2015)	2
G3BP1	4	RAB1A	0	affinity chromatography technology	Jain S (2016)	1
MLST8	1	SQSTM1	0	affinity chromatography technology	Duran A (2011)	1
PRKAA2	1	RPTOR	4	enzymatic study	Gwinn DM (2008)	1
ULK1	8	FLCN	1	affinity chromatography technology, enzymatic study, affinity chromatography technology	Dunlop EA (2014), Dunlop EA (2014), Dunlop EA (2014)	3
GABARAPL1	0	ULK1	8	affinity chromatography technology	Alemu EA (2012)	1
GABARAP	0	FLCN	1	affinity chromatography technology, affinity chromatography technology, pull down	Dunlop EA (2014), Dunlop EA (2014), Dunlop EA (2014)	3
TRIM16	0	ATG16L1	1	affinity chromatography technology, affinity chromatography technology	Chauhan S (2016), Chauhan S (2016)	2
MEFV	3	GABARAP	0	pull down, unspecified method, pull down	Kimura T (2015), Kimura T (2015), Kimura T (2015)	3
ULK1	8	PRKAG1	1	affinity chromatography technology, affinity chromatography technology	Behrends C (2010), Rui YN (2015)	2
EXOC8	1	RALB	0	two hybrid, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Moskalenko S (2003), Moskalenko S (2003), Moskalenko S (2003), Simicek M (2013), Bodemann BO (2011), Bodemann BO (2011), Huttlin EL (2017), Boldt K (2016)	8
BECN1	2	TRAF6	0	affinity chromatography technology, enzymatic study	Shi CS (2010), Shi CS (2010)	2
ULK1	8	G3BP1	4	affinity chromatography technology	Behrends C (2010)	1
SESN2	3	RB1CC1	9	affinity chromatography technology, affinity chromatography technology	Ro SH (2014), Ro SH (2014)	2
GABARAPL1	0	GABARAP	0	affinity chromatography technology	Behrends C (2010)	1
ATG101	1	CDC37	0	affinity chromatography technology	Behrends C (2010)	1
MTOR	14	RPTOR	4	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, enzymatic study, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, enzymatic study, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, imaging technique, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Jacinto E (2004), Jacinto E (2004), Sarbassov DD (2004), Sarbassov DD (2004), Sarbassov DD (2004), Schalm SS (2003), Hara K (2002), Ha SH (2006), Wang L (2006), Frias MA (2006), Frias MA (2006), Buerger C (2006), Jacinto E (2006), McMahon LP (2005), Oshiro N (2004), Kawai S (2003), Choi KM (2003), Hara K (2002), Hara K (2002), Kim DH (2002), Kim DH (2002), Schieke SM (2006), Ha SH (2006), Wang L (2006), Frias MA (2006), Buerger C (2006), Sarbassov DD (2006), Tzatsos A (2006), Sarbassov DD (2005), Yang Q (2006), Kaizuka T (2010), Pearce LR (2007), Oh WJ (2010), Oh WJ (2010), Agrawal P (2012), Kwak D (2012), Wu D (2012), Wu D (2012), Wu D (2012), Wu D (2012), Gwinn DM (2010), Sancak Y (2007), Sancak Y (2007), Yang Q (2006), Carriere A (2011), Jacinto E (2006), Rosner M (2010), Kim DH (2003), Kim DH (2003), Carriere A (2008), Murata H (2011), Koike-Kumagai M (2009), Koike-Kumagai M (2009), Hussain S (2013), Hussain S (2013), Peterson TR (2009), Peterson TR (2009), Su WC (2009), Hernandez-Negrete I (2007), Yan X (2012), Ramirez-Rangel I (2011), Ramirez-Rangel I (2011), Martin J (2008), Martin J (2008), Linares JF (2013), Coffman K (2014), Oshiro N (2014), Thedieck K (2007), Thedieck K (2007), Thedieck K (2007), Dan HC (2008), Dan HC (2008), Dan HC (2008), Hong F (2008), Hong F (2008), Choo AY (2008), Toschi A (2009), Loewith R (2002), Xu Y (2013), Sancak Y (2010), Sancak Y (2010), Vander Haar E (2007), Vander Haar E (2007), Kaadige MR (2015), Misra UK (2014), Misra UK (2014), Thedieck K (2007), Thomas JD (2014), Park D (2014), Alayev A (2016), Alayev A (2016)	91
PRKAB2	0	PRKAG1	1	two hybrid, two hybrid, affinity chromatography technology, affinity chromatography technology, two hybrid, two hybrid, two hybrid, two hybrid, affinity chromatography technology, affinity chromatography technology	Cheung PC (2000), Cheung PC (2000), Behrends C (2010), Behrends C (2010), Moreno D (2009), Wang J (2011), Corominas R (2014), Rolland T (2014), Huttlin EL (2015), Huttlin EL (2017)	10
RB1CC1	9	ATG101	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Behrends C (2010), Hosokawa N (2009), Hosokawa N (2009)	3
ULK1	8	BECN1	2	affinity chromatography technology, affinity chromatography technology, enzymatic study	Bodemann BO (2011), Chauhan S (2015), Chauhan S (2016)	3
SDCBP	0	TRAF6	0	affinity chromatography technology, affinity chromatography technology	Chen F (2008), Chen F (2008)	2
ATG16L1	1	ULK1	8	affinity chromatography technology	Gammoh N (2013)	1
MAP1LC3B	1	SQSTM1	0	two hybrid, affinity chromatography technology, two hybrid, two hybrid, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, two hybrid, pull down, x-ray crystallography, affinity chromatography technology, x-ray crystallography, pull down, affinity chromatography technology, two hybrid, imaging technique, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Stelzl U (2005), Behrends C (2010), Vinayagam A (2011), Kirkin V (2009), Kirkin V (2009), Liang X (2013), Liang X (2013), Novak I (2010), Novak I (2010), Rogov VV (2012), Gao W (2013), Maruyama Y (2014), Maruyama Y (2014), Maruyama Y (2014), Yamashita SI (2014), Wurzer B (2015), Wurzer B (2015), Wurzer B (2015), Sun A (2017), Cohen-Kaplan V (2016), Dou Z (2015), Galindo-Moreno M (2017)	22
ATG101	1	ATG13	0	affinity chromatography technology, affinity chromatography technology, two hybrid, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Behrends C (2010), Behrends C (2010), Fujita N (2013), Hosokawa N (2009), Hosokawa N (2009), Hosokawa N (2009)	6
MAP1LC3C	0	ATG13	0	affinity chromatography technology	Alemu EA (2012)	1
MEFV	3	ULK1	8	affinity chromatography technology, pull down	Kimura T (2015), Kimura T (2015)	2
SQSTM1	0	MTOR	14	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Duran A (2011), Linares JF (2015), Linares JF (2015)	3
TRIM25	5	NEDD4L	3	affinity chromatography technology	Choudhury NR (2017)	1
MEFV	3	BECN1	2	affinity chromatography technology	Kimura T (2015)	1
WASHC3	2	ULK1	8	affinity chromatography technology	Huttlin EL (2017)	1
RALB	0	ULK1	8	affinity chromatography technology	Bodemann BO (2011)	1
SDCBP	0	WASHC3	2	two hybrid	Rolland T (2014)	1
ATG101	1	ULK1	8	affinity chromatography technology, affinity chromatography technology	Hosokawa N (2009), Rui YN (2015)	2
WASHC3	2	ATG13	0	affinity chromatography technology	Huttlin EL (2017)	1
TRIM16	0	BECN1	2	affinity chromatography technology	Chauhan S (2016)	1
ULK1	8	SESN2	3	affinity chromatography technology, pull down	Ro SH (2014), Ro SH (2014)	2
IRF3	4	TRIM21	0	affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Yang K (2009), Yang K (2009), Yang K (2009), Yang K (2009), Stacey KB (2012), Higgs R (2008), Higgs R (2008)	7
RPTOR	4	AMBRA1	7	affinity chromatography technology	Nazio F (2013)	1
GABARAP	0	TRIM21	0	pull down	Kimura T (2015)	1
SQSTM1	0	MBP	0	pull down	Pridgeon JW (2004)	1
GABARAPL1	0	RB1CC1	9	affinity chromatography technology	Alemu EA (2012)	1
MTOR	14	MLST8	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Sarbassov DD (2005), Oshiro N (2004), Kawai S (2003), Kawai S (2003), Kaizuka T (2010), Behrends C (2010), Wang L (2006), McMahon LP (2005), Kim DH (2003), Kim DH (2003), Kim DH (2003), Peterson TR (2009), Yan X (2012), Ramirez-Rangel I (2011), Martin J (2008), Thedieck K (2007), Loewith R (2002), Glidden EJ (2012), Vander Haar E (2007), Huttlin EL (2015), Huttlin EL (2017), Boldt K (2016), Wang B (2017)	23
PRKAA2	1	PRKAB2	0	affinity chromatography technology, affinity chromatography technology, two hybrid, two hybrid, two hybrid, two hybrid, affinity chromatography technology, affinity chromatography technology	Behrends C (2010), Behrends C (2010), Moreno D (2009), Moreno D (2009), Corominas R (2014), Rolland T (2014), Wong KA (2006), Huttlin EL (2017)	8
ULK1	8	GABARAPL2	0	two hybrid, pull down, affinity chromatography technology, affinity chromatography technology, unspecified method	Okazaki N (2000), Okazaki N (2000), Behrends C (2010), Alemu EA (2012), Alemu EA (2012)	5
MEFV	3	GABARAPL1	0	pull down	Kimura T (2015)	1
ULK1	8	CDC37	0	affinity chromatography technology	Behrends C (2010)	1
ULK1	8	MUL1	1	affinity chromatography technology, affinity chromatography technology, pull down, enzymatic study	Li J (2015), Li J (2015), Li J (2015), Li J (2015)	4
MAP1LC3B	1	GABARAPL2	0	pull down	Maruyama Y (2014)	1
WASHC3	2	TRAF6	0	affinity chromatography technology	Huttlin EL (2017)	1
PRKAA1	2	G3BP1	4	affinity chromatography technology	Behrends C (2010)	1
ULK1	8	USP10	2	affinity chromatography technology	Behrends C (2010)	1
USP10	2	PRKAA1	2	enzymatic study, enzymatic study, pull down, affinity chromatography technology	Deng M (2016), Deng M (2016), Deng M (2016), Deng M (2016)	4
G3BP1	4	TRIM21	0	affinity chromatography technology	Jain S (2016)	1
PPP1CA	3	ULK1	8	two hybrid	Esteves SL (2012)	1
TRAF6	0	SQSTM1	0	affinity chromatography technology, affinity chromatography technology, imaging technique, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Sanz L (2000), Sanz L (2000), Nakamura K (2010), Kim JY (2009), Seibenhener ML (2004), Feng Y (2005), Martin P (2006), Martin P (2006), Geetha T (2012), Geetha T (2012), Linares JF (2013), Linares JF (2011), Linares JF (2015), Schimmack G (2017), Tsai WT (2016)	15
EXOC8	1	BECN1	2	affinity chromatography technology, affinity chromatography technology	Bodemann BO (2011), Bodemann BO (2011)	2
PRKAA1	2	RPTOR	4	enzymatic study	Gwinn DM (2008)	1
PRKAA1	2	PRKAB1	0	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, two hybrid, two hybrid, pull down, pull down, pull down, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology	Behrends C (2010), Behrends C (2010), Al-Hakim AK (2005), Lee KM (2011), Havugimana PC (2012), Varjosalo M (2013), Qi J (2008), Launay JM (1996), Launay JM (1996), Launay JM (1996), Launay JM (1996), Dyck JR (1996), Dyck JR (1996), So J (2015), Wan C (2015), Huttlin EL (2017)	16
ATG13	0	RB1CC1	9	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Behrends C (2010), Behrends C (2010), Hosokawa N (2009)	3
MAP1LC3B	1	ATG16L1	1	affinity chromatography technology	Behrends C (2010)	1
ATG16L1	1	ATG13	0	affinity chromatography technology	Gammoh N (2013)	1
PRKAA2	1	PRKAA1	2	affinity chromatography technology	Behrends C (2010)	1
TRIM25	5	PPP1CA	3	affinity chromatography technology	Choudhury NR (2017)	1
HTT	14	MAP1LC3A	0	affinity chromatography technology	Filimonenko M (2010)	1
ULK1	8	ULK1	8	enzymatic study, affinity chromatography technology	Nazio F (2013), Nazio F (2013)	2
PRKAG1	1	PRKAA1	2	two hybrid, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, pull down, pull down, affinity chromatography technology, two hybrid, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Cheung PC (2000), Behrends C (2010), Behrends C (2010), Al-Hakim AK (2005), Lee KM (2011), Varjosalo M (2013), Launay JM (1996), Launay JM (1996), Dyck JR (1996), Dyck JR (1996), Rolland T (2014), So J (2015), Huttlin EL (2015), Huttlin EL (2017)	14
GABARAP	0	ULK2	0	unspecified method	Alemu EA (2012)	1
TRIM25	5	MTOR	14	affinity chromatography technology	Choudhury NR (2017)	1
MAP1LC3B	1	ATG4B	1	two hybrid, affinity chromatography technology, two hybrid, two hybrid, enzymatic study, affinity chromatography technology	Stelzl U (2005), Behrends C (2010), Vinayagam A (2011), Novak I (2010), Tanida I (2004), Gao W (2013)	6
MAP1LC3C	0	GABARAP	0	affinity chromatography technology	Behrends C (2010)	1
BECN1	2	AMBRA1	7	affinity chromatography technology, affinity chromatography technology, enzymatic study, affinity chromatography technology, pull down, affinity chromatography technology, fluorescent resonance energy transfe, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Behrends C (2010), Strappazzon F (2011), Xia P (2013), Xia P (2013), Xia P (2013), Luciani A (2010), Luciani A (2010), Di Bartolomeo S (2010), Gu W (2014), Gu W (2014), Antonioli M (2014)	11
GABARAP	0	ATG101	1	two hybrid	Fujita N (2013)	1
GABARAP	0	GABARAPL2	0	affinity chromatography technology	Behrends C (2010)	1
MAP1LC3B	1	TRIM21	0	pull down	Kimura T (2015)	1
PRKAA2	1	USP10	2	pull down, affinity chromatography technology, affinity chromatography technology, enzymatic study, enzymatic study	Deng M (2016), Deng M (2016), Deng M (2016), Deng M (2016), Deng M (2016)	5
USP10	2	G3BP1	4	pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, pull down, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down	Soncini C (2001), Soncini C (2001), Sowa ME (2009), Sowa ME (2009), Takahashi M (2013), Takahashi M (2013), Oi N (2014), Oi N (2014), Wan C (2015), Huttlin EL (2017), Jain S (2016), Kedersha N (2016), Kedersha N (2016), Kedersha N (2016)	14
TRIM21	0	ULK1	8	affinity chromatography technology	Kimura T (2015)	1
TRIM25	5	RPTOR	4	affinity chromatography technology	Choudhury NR (2017)	1
WASHC3	2	RB1CC1	9	affinity chromatography technology	Huttlin EL (2017)	1
MAP1LC3A	0	TRIM21	0	pull down	Kimura T (2015)	1
GABARAP	0	MUL1	1	affinity chromatography technology	Ambivero CT (2014)	1
MEFV	3	NLRP3	2	affinity chromatography technology	Kimura T (2015)	1
SQSTM1	0	MAP1LC3C	0	affinity chromatography technology	Kirkin V (2009)	1
TRIM25	5	IRF3	4	affinity chromatography technology	Choudhury NR (2017)	1
SQSTM1	0	ULK1	8	affinity chromatography technology, enzymatic study, enzymatic study, affinity chromatography technology	Ro SH (2014), Ro SH (2014), Lim J (2015), Lim J (2015)	4
GABARAP	0	SQSTM1	0	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, imaging technique, affinity chromatography technology	Behrends C (2010), Kirkin V (2009), Maruyama Y (2014), Dunlop EA (2014), Wurzer B (2015), Wurzer B (2015)	6
SQSTM1	0	GABARAPL2	0	two hybrid, affinity chromatography technology, two hybrid, affinity chromatography technology, two hybrid, affinity chromatography technology, affinity chromatography technology, two hybrid, two hybrid	Rual JF (2005), Behrends C (2010), Vinayagam A (2011), Shvets E (2011), Kirkin V (2009), Kirkin V (2009), Maruyama Y (2014), Rolland T (2014), Yu H (2011)	9
TRIM25	5	BIRC2	1	affinity chromatography technology	Choudhury NR (2017)	1
PRKAB1	0	PRKAB2	0	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Ewing RM (2007), Behrends C (2010), Huttlin EL (2017)	3
ULK1	8	IRF3	4	affinity chromatography technology	Kimura T (2015)	1
TRIM25	5	SQSTM1	0	affinity chromatography technology	Choudhury NR (2017)	1
TRIM25	5	RALB	0	affinity chromatography technology	Choudhury NR (2017)	1
IRGM	1	AMBRA1	7	affinity chromatography technology	Chauhan S (2015)	1
ULK1	8	PRKAB2	0	affinity chromatography technology	Behrends C (2010)	1
ULK1	8	RAB1A	0	affinity chromatography technology	Wang J (2013)	1
MAP1LC3C	0	ULK1	8	affinity chromatography technology	Alemu EA (2012)	1
MAP1LC3A	0	SQSTM1	0	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, imaging technique, affinity chromatography technology, biochemical, imaging technique, affinity chromatography technology, x-ray crystallography, pull down, affinity chromatography technology, imaging technique, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, imaging technique, pull down, pull down, affinity chromatography technology	Shvets E (2008), Shvets E (2008), Behrends C (2010), Gao Z (2010), Pan JA (2011), Pankiv S (2007), Pankiv S (2007), Shvets E (2011), Tung YT (2010), Bjorkoy G (2005), Kirkin V (2009), Lim J (2011), Lim J (2011), Pan JA (2012), Lee DY (2013), Wang BS (2013), Wang BS (2013), Sansanwal P (2012), Shi J (2013), Fujita N (2013), Chen X (2014), Liu XD (2014), Noda NN (2008), Noda NN (2008), Matsuzawa Y (2015), Matsuzawa Y (2015), Rui YN (2015), Rui YN (2015), Ciuffa R (2015), Wang N (2013), Hua F (2015), Rui YN (2015), Cha-Molstad H (2015), Paul S (2012), Puvirajesinghe TM (2016), Wang L (2017), Cha-Molstad H (2017), Peng H (2017), Lee Y (2017)	39
ULK1	8	ATG4B	1	affinity chromatography technology	Behrends C (2010)	1
ULK2	0	RB1CC1	9	affinity chromatography technology	Behrends C (2010)	1
TRAF6	0	BIRC2	1	affinity chromatography technology, affinity chromatography technology	Mao AP (2010), Hinz M (2010)	2
ATG13	0	AMBRA1	7	affinity chromatography technology	Nazio F (2013)	1
SQSTM1	0	ATG4B	1	affinity chromatography technology	Tanji K (2012)	1
ULK1	8	RB1CC1	9	affinity chromatography technology, affinity chromatography technology	Behrends C (2010), Rui YN (2015)	2
PRKAB1	0	PRKAG1	1	two hybrid, two hybrid, affinity chromatography technology, affinity chromatography technology, two hybrid, affinity chromatography technology, two hybrid, two hybrid, pull down, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Cheung PC (2000), Cheung PC (2000), Behrends C (2010), Behrends C (2010), Wang J (2011), Qi J (2008), Launay JM (1996), Launay JM (1996), Launay JM (1996), Launay JM (1996), Dyck JR (1996), Dyck JR (1996), Huttlin EL (2015), Huttlin EL (2017)	14
GABARAPL1	0	ATG13	0	affinity chromatography technology	Alemu EA (2012)	1
EXOC8	1	ULK1	8	affinity chromatography technology, enzymatic study	Bodemann BO (2011), Bodemann BO (2011)	2
TRAF6	0	RPTOR	4	affinity chromatography technology	Linares JF (2013)	1
MAP1LC3B	1	GABARAP	0	affinity chromatography technology	Behrends C (2010)	1
ULK1	8	MBP	0	enzymatic study	Nazio F (2013)	1
MTOR	14	AMBRA1	7	enzymatic study	Nazio F (2013)	1
ULK1	8	ULK2	0	genetic interference	Goodwin JM (2017)	1
EXOC8	1	EXOC2	5	two hybrid, two hybrid, affinity chromatography technology, biochemical, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology	Moskalenko S (2003), Moskalenko S (2003), Moskalenko S (2003), Havugimana PC (2012), Simicek M (2013), Wan C (2015), Huttlin EL (2017), Boldt K (2016)	8
ULK1	8	ATG13	0	enzymatic study, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, enzymatic study, affinity chromatography technology	Dunlop EA (2011), Nazio F (2013), Nazio F (2013), Hosokawa N (2009), Li J (2015), Dunlop EA (2014), Rui YN (2015)	7
MAP1LC3A	0	ATG4B	1	affinity chromatography technology, x-ray crystallography, enzymatic study, enzymatic study	Behrends C (2010), Satoo K (2009), Betin VM (2009), Betin VM (2009)	4
ULK1	8	DAPK3	5	affinity chromatography technology	Tang HW (2011)	1
PRKAG1	1	PRKAA2	1	two hybrid, affinity chromatography technology, affinity chromatography technology, two hybrid, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Cheung PC (2000), Behrends C (2010), Behrends C (2010), Rolland T (2014), Wong KA (2006), Huttlin EL (2015), Huttlin EL (2017)	7
MAP1LC3C	0	GABARAPL2	0	affinity chromatography technology	Behrends C (2010)	1
MEFV	3	ATG16L1	1	affinity chromatography technology	Kimura T (2015)	1
MLST8	1	RPTOR	4	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Behrends C (2010), Gwinn DM (2010), Wang L (2006), Hernandez-Negrete I (2007), Ramirez-Rangel I (2011), Coffman K (2014), Loewith R (2002), Loewith R (2002), Thedieck K (2007), Wang B (2017)	10
PRKAB2	0	RB1CC1	9	affinity chromatography technology	Behrends C (2010)	1
ULK1	8	BIRC2	1	affinity chromatography technology, affinity chromatography technology	Mukhopadhyay S (2016), Mukhopadhyay S (2016)	2
GABARAPL2	0	TRIM21	0	pull down	Kimura T (2015)	1
TRAF6	0	MTOR	14	affinity chromatography technology, enzymatic study	Linares JF (2013), Linares JF (2013)	2
TRIM25	5	ULK1	8	affinity chromatography technology	Choudhury NR (2017)	1
NLRP3	2	ULK1	8	affinity chromatography technology	Kimura T (2015)	1
PRKAA2	1	FLCN	1	affinity chromatography technology	Behrends C (2010)	1
ULK2	0	SYNGAP1	65	pull down	Tomoda T (2004)	1
IRGM	1	ULK1	8	affinity chromatography technology	Chauhan S (2015)	1
FLCN	1	CDC37	0	affinity chromatography technology	Woodford MR (2016)	1
MAP1LC3C	0	RB1CC1	9	affinity chromatography technology	Behrends C (2010)	1
MAP1LC3A	0	ULK1	8	affinity chromatography technology	Alemu EA (2012)	1
SESN2	3	SQSTM1	0	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, imaging technique	Bae SH (2013), Ro SH (2014), Kim MJ (2016), Kim MJ (2016)	4
ULK1	8	PRKAA1	2	affinity chromatography technology, affinity chromatography technology	Behrends C (2010), Rui YN (2015)	2
ULK1	8	GABARAP	0	affinity chromatography technology, two hybrid, pull down, affinity chromatography technology, unspecified method, affinity chromatography technology	Ewing RM (2007), Okazaki N (2000), Okazaki N (2000), Alemu EA (2012), Alemu EA (2012), Dunlop EA (2014)	6
MAP1LC3C	0	TRIM21	0	pull down	Kimura T (2015)	1
OCLN	1	NEDD4L	3	affinity chromatography technology, affinity chromatography technology	Raikwar NS (2010), Huttlin EL (2017)	2
PRKAA2	1	G3BP1	4	biochemical, affinity chromatography technology	Mahboubi H (2015), Mahboubi H (2015)	2
HTT	14	MTOR	14	affinity chromatography technology	Pryor WM (2014)	1
HTT	14	TRAF6	0	affinity chromatography technology, affinity chromatography technology	Zucchelli S (2011), Zucchelli S (2011)	2
AMBRA1	7	GABARAP	0	affinity chromatography technology	Strappazzon F (2014)	1
PRKAA2	1	ULK1	8	affinity chromatography technology	Behrends C (2010)	1
MEFV	3	MAP1LC3C	0	pull down	Kimura T (2015)	1
TRIM25	5	RB1CC1	9	affinity chromatography technology	Choudhury NR (2017)	1
NEDD4L	3	DAPK3	5	enzymatic study	Persaud A (2009)	1
GABARAPL1	0	TRIM21	0	pull down	Kimura T (2015)	1
GABARAPL2	0	ULK2	0	unspecified method	Alemu EA (2012)	1
PRKAB1	0	PRKAA2	1	affinity chromatography technology, biochemical, affinity chromatography technology	Behrends C (2010), Wan C (2015), Huttlin EL (2017)	3
PRKAA1	2	MTOR	14	unspecified method	Cheng SW (2004)	1
MAP1LC3B	1	ULK1	8	affinity chromatography technology	Alemu EA (2012)	1
RAB1A	0	MTOR	14	affinity chromatography technology, affinity chromatography technology	Thomas JD (2014), Thomas JD (2014)	2
ULK1	8	PRKAB1	0	affinity chromatography technology	Rui YN (2015)	1
EXOC2	5	ULK1	8	affinity chromatography technology	Bodemann BO (2011)	1
IRGM	1	ATG16L1	1	affinity chromatography technology, affinity chromatography technology	Chauhan S (2015), Chauhan S (2015)	2
ATG4B	1	GABARAPL1	0	affinity chromatography technology, affinity chromatography technology, enzymatic study, enzymatic study, enzymatic study	Behrends C (2010), Behrends C (2010), Tanida I (2006), Betin VM (2009), Betin VM (2009)	5
TRIM25	5	G3BP1	4	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Choudhury NR (2017), Choudhury NR (2017), Jain S (2016)	3
ULK1	8	SYNGAP1	65	two hybrid, pull down, affinity chromatography technology	Tomoda T (2004), Tomoda T (2004), Tomoda T (2004)	3
ULK1	8	AMBRA1	7	enzymatic study, affinity chromatography technology, affinity chromatography technology	Di Bartolomeo S (2010), Nazio F (2013), Nazio F (2013)	3
GABARAP	0	RB1CC1	9	affinity chromatography technology, unspecified method	Alemu EA (2012), Alemu EA (2012)	2
TRIM25	5	AMBRA1	7	affinity chromatography technology	Choudhury NR (2017)	1
SDCBP	0	ULK1	8	two hybrid, affinity chromatography technology	Tomoda T (2004), Tomoda T (2004)	2
OCLN	1	ULK1	8	two hybrid	McKenzie JA (2006)	1
SQSTM1	0	RPTOR	4	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Duran A (2011), Duran A (2011), Linares JF (2015)	3
MAP1LC3A	0	GABARAPL1	0	imaging technique	Tanida I (2006)	1
IRGM	1	BECN1	2	affinity chromatography technology, affinity chromatography technology	Chauhan S (2015), Chauhan S (2015)	2
TRAF6	0	TRIM25	5	two hybrid	Woodsmith J (2012)	1
TRAF6	0	USP10	2	affinity chromatography technology	Wang W (2015)	1
ATG13	0	MUL1	1	affinity chromatography technology	Li J (2015)	1
MAP1LC3A	0	ATG101	1	two hybrid	Fujita N (2013)	1
IRF3	4	TRAF6	0	affinity chromatography technology	Liu S (2015)	1
ULK1	8	RPTOR	4	enzymatic study, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Dunlop EA (2011), Dunlop EA (2011), Dunlop EA (2011), Rui YN (2015), Rui YN (2015)	5
HTT	14	SQSTM1	0	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Filimonenko M (2010), Zhou L (2014), Rui YN (2015), Rui YN (2015)	4
GABARAP	0	ATG4B	1	two hybrid, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Stelzl U (2005), Behrends C (2010), Behrends C (2010), Dunlop EA (2014)	4
PRKAA1	2	CDC37	0	affinity chromatography technology	Al-Hakim AK (2005)	1
GABARAPL1	0	GABARAPL2	0	affinity chromatography technology	Behrends C (2010)	1
TRIM21	0	BECN1	2	affinity chromatography technology	Kimura T (2015)	1
GABARAPL2	0	ATG4B	1	affinity chromatography technology, two hybrid, affinity chromatography technology, affinity chromatography technology, two hybrid, enzymatic study	Ewing RM (2007), Stelzl U (2005), Behrends C (2010), Behrends C (2010), Vinayagam A (2011), Betin VM (2009)	6
PRKAA1	2	PRKAB2	0	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, two hybrid, affinity chromatography technology, two hybrid, two hybrid, affinity chromatography technology, biochemical, affinity chromatography technology	Behrends C (2010), Behrends C (2010), Al-Hakim AK (2005), Wang J (2011), Varjosalo M (2013), Corominas R (2014), Rolland T (2014), So J (2015), Wan C (2015), Huttlin EL (2017)	10
ULK1	8	MLST8	1	affinity chromatography technology	Dunlop EA (2011)	1
PRKAA2	1	RB1CC1	9	affinity chromatography technology	Behrends C (2010)	1
RAB1A	0	RPTOR	4	affinity chromatography technology, imaging technique, affinity chromatography technology	Thomas JD (2014), Thomas JD (2014), Thomas JD (2014)	3
SQSTM1	0	TRIM21	0	affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, enzymatic study, affinity chromatography technology	Kim JY (2009), Kim JY (2009), Kimura T (2015), Milan E (2015), Pan JA (2016), Pan JA (2016)	6
TRIM25	5	MLST8	1	affinity chromatography technology	Choudhury NR (2017)	1
SQSTM1	0	ULK2	0	pull down	Pridgeon JW (2004)	1
AMBRA1	7	ATG4B	1	affinity chromatography technology	Behrends C (2010)	1
SQSTM1	0	GABARAPL1	0	two hybrid, affinity chromatography technology, two hybrid, affinity chromatography technology, affinity chromatography technology, imaging technique, two hybrid	Rual JF (2005), Behrends C (2010), Wild P (2011), Kirkin V (2009), Zhang Y (2011), Zhang Y (2011), Rolland T (2014)	7
RB1CC1	9	ATG16L1	1	affinity chromatography technology, two hybrid, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology	Fujita N (2013), Fujita N (2013), Gammoh N (2013), Gammoh N (2013), Gammoh N (2013), Gammoh N (2013), Dooley HC (2014)	7
WASHC3	2	ATG101	1	affinity chromatography technology	Huttlin EL (2017)	1
MAP1LC3B	1	MAP1LC3A	0	affinity chromatography technology	Behrends C (2010)	1
TRAF6	0	AMBRA1	7	affinity chromatography technology, affinity chromatography technology	Nazio F (2013), Antonioli M (2014)	2
MEFV	3	GABARAPL2	0	pull down	Kimura T (2015)	1
MAP1LC3B	1	ATG13	0	affinity chromatography technology	Alemu EA (2012)	1
GABARAPL2	0	ATG13	0	two hybrid, affinity chromatography technology, unspecified method	Vinayagam A (2011), Alemu EA (2012), Alemu EA (2012)	3
MAP1LC3A	0	ATG13	0	affinity chromatography technology, two hybrid	Alemu EA (2012), Fujita N (2013)	2