PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000253697	[[14716605, 14716759], [14723676, 14723838], [14724084, 14724704], [14725748, 14725889], [14731503, 14731623], [14744636, 14744769], [14745843, 14746125], [14755513, 14755666], [14756795, 14756916], [14763159, 14763291], [14768407, 14768531], [14769945, 14770195], [14798877, 14799181], [14801397, 14801505], [14802979, 14803122], [14813573, 14813708], [14814297, 14814541]]	[[14724220, 14724704], [14725748, 14725889], [14731503, 14731623], [14744636, 14744769], [14745843, 14746125], [14755513, 14755666], [14756795, 14756916], [14763159, 14763291], [14768407, 14768531], [14769945, 14770195], [14798877, 14799181], [14801397, 14801505], [14802979, 14803122], [14813573, 14813708], [14814297, 14814382]]
ENST00000435614	[[14716647, 14716759], [14723676, 14723838], [14724481, 14724704], [14725748, 14725889], [14731503, 14731623], [14744636, 14744769], [14745843, 14746125], [14755513, 14755666], [14756795, 14756916], [14763159, 14763291], [14768407, 14768531], [14769945, 14770195], [14798877, 14799181], [14801397, 14801505], [14802979, 14803122], [14813573, 14813708], [14814297, 14814512]]	[[14724586, 14724704], [14725748, 14725889], [14731503, 14731623], [14744636, 14744769], [14745843, 14746125], [14755513, 14755666], [14756795, 14756916], [14763159, 14763291], [14768407, 14768531], [14769945, 14770195], [14798877, 14799181], [14801397, 14801505], [14802979, 14803122], [14813573, 14813708], [14814297, 14814382]]
ENST00000412910	[[14716685, 14716759], [14723781, 14723838], [14724481, 14724704], [14725748, 14725889], [14731503, 14731623], [14744636, 14744769], [14745843, 14746125], [14755513, 14755666], [14756795, 14756916], [14763159, 14763291], [14768407, 14768531], [14769945, 14770195], [14798877, 14799181], [14801397, 14801505], [14802979, 14803122], [14813573, 14813708], [14814297, 14814541]]	[[14724586, 14724704], [14725748, 14725889], [14731503, 14731623], [14744636, 14744769], [14745843, 14746125], [14755513, 14755666], [14756795, 14756916], [14763159, 14763291], [14768407, 14768531], [14769945, 14770195], [14798877, 14799181], [14801397, 14801505], [14802979, 14803122], [14813573, 14813708], [14814297, 14814382]]
ENST00000495387	[[14745861, 14746125], [14755513, 14755666], [14756795, 14756916], [14763159, 14763291], [14763580, 14763746]]	None
NM_001184957	[[14716605, 14716759], [14723781, 14723838], [14724481, 14724704], [14725748, 14725889], [14731503, 14731623], [14744636, 14744769], [14745843, 14746125], [14755513, 14755666], [14756795, 14756916], [14763159, 14763291], [14768407, 14768531], [14769945, 14770195], [14798877, 14799181], [14801397, 14801505], [14802979, 14803122], [14813573, 14813708], [14814297, 14814543]]	[[14724586, 14724704], [14725748, 14725889], [14731503, 14731623], [14744636, 14744769], [14745843, 14746125], [14755513, 14755666], [14756795, 14756916], [14763159, 14763291], [14768407, 14768531], [14769945, 14770195], [14798877, 14799181], [14801397, 14801505], [14802979, 14803122], [14813573, 14813708], [14814297, 14814382]]
NM_001184958	[[14716605, 14716759], [14723676, 14723838], [14724481, 14724704], [14725748, 14725889], [14731503, 14731623], [14744636, 14744769], [14745843, 14746125], [14755513, 14755666], [14756795, 14756916], [14763159, 14763291], [14768407, 14768531], [14769945, 14770195], [14798877, 14799181], [14801397, 14801505], [14802979, 14803122], [14813573, 14813708], [14814297, 14814543]]	[[14724586, 14724704], [14725748, 14725889], [14731503, 14731623], [14744636, 14744769], [14745843, 14746125], [14755513, 14755666], [14756795, 14756916], [14763159, 14763291], [14768407, 14768531], [14769945, 14770195], [14798877, 14799181], [14801397, 14801505], [14802979, 14803122], [14813573, 14813708], [14814297, 14814382]]
NM_032137	[[14716605, 14716759], [14723676, 14723838], [14724084, 14724704], [14725748, 14725889], [14731503, 14731623], [14744636, 14744769], [14745843, 14746125], [14755513, 14755666], [14756795, 14756916], [14763159, 14763291], [14768407, 14768531], [14769945, 14770195], [14798877, 14799181], [14801397, 14801505], [14802979, 14803122], [14813573, 14813708], [14814297, 14814543]]	[[14724220, 14724704], [14725748, 14725889], [14731503, 14731623], [14744636, 14744769], [14745843, 14746125], [14755513, 14755666], [14756795, 14756916], [14763159, 14763291], [14768407, 14768531], [14769945, 14770195], [14798877, 14799181], [14801397, 14801505], [14802979, 14803122], [14813573, 14813708], [14814297, 14814382]]

Promoter

Chrom	Start	End	Description
chr3	14716634	14716653	CAGE_peak_2_at_C3orf20_5end
chr3	14798458	14798462	CAGE_peak_1_at_C3orf20_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I014828	14828826	14828841	0.22	[{'connected_gene': 'C3orf20', 'score': 10.56}, {'connected_gene': 'GRIP2', 'score': 7.24}, {'connected_gene': 'PIR49239', 'score': 0.44}, {'connected_gene': 'FGD5', 'score': 0.37}, {'connected_gene': 'LOC105376963', 'score': 0.16}]
chr3	GH03I014673	14673608	14673689	0.5	[{'connected_gene': 'C3orf20', 'score': 561.44}, {'connected_gene': 'CCDC174', 'score': 7.42}, {'connected_gene': 'NR2C2', 'score': 1.37}]
chr3	GH03I014884	14884081	14884820	0.43	[{'connected_gene': 'C3orf20', 'score': 10.67}, {'connected_gene': 'CCDC174', 'score': 9.91}, {'connected_gene': 'LOC105376963', 'score': 0.28}, {'connected_gene': 'PIR49239', 'score': 0.21}, {'connected_gene': 'FGD5', 'score': 0.19}]
chr3	GH03I014933	14933101	14937693	0.54	[{'connected_gene': 'C3orf20', 'score': 10.47}, {'connected_gene': 'CCDC174', 'score': 10.17}, {'connected_gene': 'FGD5-AS1', 'score': 10.16}, {'connected_gene': 'ENSG00000235629', 'score': 9.76}, {'connected_gene': 'COLQ', 'score': 4.67}, {'connected_gene': 'RPS3AP53', 'score': 4.67}, {'connected_gene': 'PIR33304', 'score': 0.44}, {'connected_gene': 'PIR49010', 'score': 0.44}, {'connected_gene': 'FGD5', 'score': 0.13}]
chr3	GH03I014724	14724694	14727182	0.82	[{'connected_gene': 'C3orf20', 'score': 21.26}, {'connected_gene': 'ENSG00000230172', 'score': 12.15}, {'connected_gene': 'CCDC174', 'score': 10.55}, {'connected_gene': 'ENSG00000235629', 'score': 9.94}, {'connected_gene': 'PIR53505', 'score': 0.39}, {'connected_gene': 'PIR51472', 'score': 0.25}]
chr3	GH03I014831	14831297	14834475	0.62	[{'connected_gene': 'C3orf20', 'score': 10.55}, {'connected_gene': 'PIR49239', 'score': 0.39}, {'connected_gene': 'FGD5', 'score': 0.34}, {'connected_gene': 'LOC105376963', 'score': 0.17}]
chr3	GH03I014822	14822801	14823999	0.83	[{'connected_gene': 'C3orf20', 'score': 11.24}, {'connected_gene': 'PIR49239', 'score': 0.77}, {'connected_gene': 'FGD5', 'score': 0.39}, {'connected_gene': 'LOC105376963', 'score': 0.15}]
chr3	GH03I014634	14634834	14634983	0.31	[{'connected_gene': 'C3orf20', 'score': 10.81}, {'connected_gene': 'ENSG00000230172', 'score': 10.73}, {'connected_gene': 'PIR36019', 'score': 0.39}, {'connected_gene': 'LOC105376960', 'score': 0.29}, {'connected_gene': 'GRIP2', 'score': 0.29}]
chr3	GH03I014841	14841572	14843739	0.38	[{'connected_gene': 'C3orf20', 'score': 10.5}, {'connected_gene': 'FGD5-AS1', 'score': 4.53}, {'connected_gene': 'PIR49239', 'score': 0.34}, {'connected_gene': 'FGD5', 'score': 0.29}, {'connected_gene': 'LOC105376963', 'score': 0.18}]
chr3	GH03I014675	14675092	14675151	0.5	[{'connected_gene': 'C3orf20', 'score': 550.77}, {'connected_gene': 'PIR51472', 'score': 0.77}]
chr3	GH03I014207	14207582	14212707	1.09	[{'connected_gene': 'SLC6A6', 'score': 14.21}, {'connected_gene': 'XPC', 'score': 6.24}, {'connected_gene': 'C3orf20', 'score': 4.69}, {'connected_gene': 'CHCHD4', 'score': 4.55}, {'connected_gene': 'GC03P014217', 'score': 0.44}]
chr3	GH03I014687	14687182	14688143	0.43	[{'connected_gene': 'CCDC174', 'score': 4.59}, {'connected_gene': 'PIR51472', 'score': 0.44}, {'connected_gene': 'C3orf20', 'score': 0.39}, {'connected_gene': 'PIR53505', 'score': 0.23}]
chr3	GH03I014885	14885022	14885600	0.89	[{'connected_gene': 'FGD5', 'score': 12.43}, {'connected_gene': 'C3orf20', 'score': 10.67}, {'connected_gene': 'CCDC174', 'score': 10.07}, {'connected_gene': 'ENSG00000235629', 'score': 10.06}, {'connected_gene': 'FGD5-AS1', 'score': 5.02}, {'connected_gene': 'LOC105376963', 'score': 0.28}, {'connected_gene': 'PIR49239', 'score': 0.21}]
chr3	GH03I014783	14783359	14786574	0.57	[{'connected_gene': 'FGD5', 'score': 12.74}, {'connected_gene': 'C3orf20', 'score': 11.92}, {'connected_gene': 'ENSG00000235629', 'score': 10.38}, {'connected_gene': 'CCDC174', 'score': 10.38}, {'connected_gene': 'PIR61652', 'score': 0.44}]
chr3	GH03I014839	14837095	14838481	0.89	[{'connected_gene': 'ENSG00000230172', 'score': 10.96}, {'connected_gene': 'C3orf20', 'score': 10.63}, {'connected_gene': 'TMEM43', 'score': 5.13}, {'connected_gene': 'PIR49239', 'score': 0.37}, {'connected_gene': 'FGD5', 'score': 0.31}, {'connected_gene': 'LOC105376963', 'score': 0.18}]
chr3	GH03I014838	14838608	14839308	0.49	[{'connected_gene': 'ENSG00000230172', 'score': 10.96}, {'connected_gene': 'C3orf20', 'score': 10.63}, {'connected_gene': 'PIR49239', 'score': 0.37}, {'connected_gene': 'FGD5', 'score': 0.31}, {'connected_gene': 'LOC105376963', 'score': 0.18}]
chr3	GH03I014925	14925774	14925883	0.64	[{'connected_gene': 'PIR33304', 'score': 550.77}, {'connected_gene': 'C3orf20', 'score': 11.29}, {'connected_gene': 'LOC105376963', 'score': 0.77}, {'connected_gene': 'FGD5-AS1', 'score': 0.34}, {'connected_gene': 'FGD5', 'score': 0.14}]
chr3	GH03I014688	14688648	14688770	0.49	[{'connected_gene': 'PIR51472', 'score': 0.44}, {'connected_gene': 'C3orf20', 'score': 0.39}, {'connected_gene': 'PIR53505', 'score': 0.23}]
chr3	GH03I014689	14689801	14690200	0.2	[{'connected_gene': 'PIR51472', 'score': 0.44}, {'connected_gene': 'C3orf20', 'score': 0.37}, {'connected_gene': 'PIR53505', 'score': 0.25}]
chr3	GH03I014677	14677673	14679157	0.92	[{'connected_gene': 'PIR51472', 'score': 550.77}, {'connected_gene': 'CCDC174', 'score': 22.31}, {'connected_gene': 'ENSG00000230172', 'score': 10.78}, {'connected_gene': 'C3orf20', 'score': 0.77}]
chr3	GH03I014680	14680834	14680943	0.52	[{'connected_gene': 'PIR51472', 'score': 550.77}, {'connected_gene': 'CCDC174', 'score': 10.62}, {'connected_gene': 'C3orf20', 'score': 0.44}, {'connected_gene': 'PIR53505', 'score': 0.22}]
chr3	GH03I014765	14765819	14770486	0.46	[{'connected_gene': 'ENSG00000230172', 'score': 550.77}, {'connected_gene': 'CAPN7', 'score': 16.37}, {'connected_gene': 'CCDC174', 'score': 11.43}, {'connected_gene': 'NR2C2', 'score': 11.32}, {'connected_gene': 'XPC', 'score': 11.25}, {'connected_gene': 'C3orf20', 'score': 8.31}, {'connected_gene': 'LINC01267', 'score': 5.95}, {'connected_gene': 'PIR61652', 'score': 0.44}]
chr3	GH03I014941	14941681	14944394	0.63	[{'connected_gene': 'PIR49010', 'score': 550.77}, {'connected_gene': 'FGD5-AS1', 'score': 11.06}, {'connected_gene': 'C3orf20', 'score': 10.46}, {'connected_gene': 'ENSG00000235629', 'score': 10.02}, {'connected_gene': 'CCDC174', 'score': 10.02}, {'connected_gene': 'PIR33304', 'score': 0.37}]