PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000280605	[[164392256, 164395047]]	[[164393005, 164394886]]
NM_032136	[[164392246, 164395047]]	[[164393005, 164394886]]

Promoter

Chrom	Start	End	Description
chr4	164394549	164394561	CAGE_peak_6_at_TKTL2_5end
chr4	164394882	164394937	CAGE_peak_1_at_TKTL2_5end
chr4	164394940	164394953	CAGE_peak_2_at_TKTL2_5end
chr4	164394959	164394967	CAGE_peak_4_at_TKTL2_5end
chr4	164395014	164395047	CAGE_peak_3_at_TKTL2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr4	GH04I163481	163481769	163483079	0.4	[{'connected_gene': 'TKTL2', 'score': 0.44}, {'connected_gene': 'TMA16', 'score': 0.39}]
chr4	GH04I163571	163571051	163571276	0.22	[{'connected_gene': 'TKTL2', 'score': 10.35}, {'connected_gene': 'MARCH1', 'score': 6.15}, {'connected_gene': 'NAF1', 'score': 4.08}, {'connected_gene': 'ENSG00000273449', 'score': 0.26}, {'connected_gene': 'PIR37872', 'score': 0.07}]
chr4	GH04I163568	163568552	163569698	0.31	[{'connected_gene': 'TKTL2', 'score': 10.35}, {'connected_gene': 'ENSG00000273449', 'score': 0.28}, {'connected_gene': 'PIR37872', 'score': 0.07}, {'connected_gene': 'MARCH1', 'score': 0.03}]
chr4	GH04I163473	163473744	163473803	0.76	[{'connected_gene': 'TKTL2', 'score': 550.77}, {'connected_gene': 'RPL35AP12', 'score': 0.16}]
chr4	GH04I163543	163543051	163543198	0.26	[{'connected_gene': 'TMA16', 'score': 12.32}, {'connected_gene': 'TKTL2', 'score': 10.7}, {'connected_gene': 'MARCH1', 'score': 2.36}, {'connected_gene': 'NPY5R', 'score': 2.31}, {'connected_gene': 'NPY1R', 'score': 1.94}, {'connected_gene': 'ENSG00000273449', 'score': 0.39}, {'connected_gene': 'PIR37872', 'score': 0.06}]
chr4	GH04I163484	163484949	163485098	0.65	[{'connected_gene': 'TMA16', 'score': 0.44}, {'connected_gene': 'TKTL2', 'score': 0.39}]
chr4	GH04I163493	163493060	163496419	2.35	[{'connected_gene': 'TMA16', 'score': 553.1}, {'connected_gene': 'MARCH1', 'score': 47.28}, {'connected_gene': 'ENSG00000273449', 'score': 8.92}, {'connected_gene': 'TKTL2', 'score': 1.55}]
chr4	GH04I163550	163550001	163550800	1.39	[{'connected_gene': 'MARCH1', 'score': 19.86}, {'connected_gene': 'TMA16', 'score': 12.37}, {'connected_gene': 'TKTL2', 'score': 10.59}, {'connected_gene': 'ENSG00000273449', 'score': 0.34}, {'connected_gene': 'PIR37872', 'score': 0.07}]
chr4	GH04I163540	163540565	163542395	0.43	[{'connected_gene': 'MARCH1', 'score': 53.23}, {'connected_gene': 'TMA16', 'score': 12.32}, {'connected_gene': 'TKTL2', 'score': 10.7}, {'connected_gene': 'ENSG00000273449', 'score': 0.39}, {'connected_gene': 'PIR37872', 'score': 0.06}]
chr4	GH04I163535	163535774	163536756	0.51	[{'connected_gene': 'MARCH1', 'score': 47.68}, {'connected_gene': 'TMA16', 'score': 12.28}, {'connected_gene': 'TKTL2', 'score': 10.68}, {'connected_gene': 'ENSG00000273449', 'score': 0.44}, {'connected_gene': 'PIR37872', 'score': 0.06}]
chr4	GH04I163544	163544201	163545639	1.08	[{'connected_gene': 'MARCH1', 'score': 48.75}, {'connected_gene': 'TMA16', 'score': 12.31}, {'connected_gene': 'TKTL2', 'score': 10.57}, {'connected_gene': 'ENSG00000273449', 'score': 0.37}, {'connected_gene': 'PIR37872', 'score': 0.06}]
chr4	GH04I163415	163415420	163416667	0.43	[{'connected_gene': 'RPL35AP12', 'score': 0.29}, {'connected_gene': 'TKTL2', 'score': 0.22}]
chr4	GH04I163528	163528033	163529942	0.2	[{'connected_gene': 'ENSG00000273449', 'score': 550.77}, {'connected_gene': 'MARCH1', 'score': 48.78}, {'connected_gene': 'TKTL2', 'score': 10.87}, {'connected_gene': 'TMA16', 'score': 5.6}]