PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000368096	[[159887896, 159888731], [159889063, 159889166], [159889450, 159889625], [159890119, 159890327], [159893225, 159893507]]	[[159888589, 159888731], [159889063, 159889166], [159889450, 159889625], [159890119, 159890327], [159893225, 159893260]]
ENST00000368097	[[159887896, 159888731], [159889063, 159889166], [159889450, 159889625], [159890119, 159890327], [159895239, 159895522]]	[[159888589, 159888731], [159889063, 159889166], [159889450, 159889625], [159890119, 159890299]]
ENST00000478033	[[159888540, 159889166], [159889450, 159889625], [159890119, 159890327], [159895239, 159895281]]	None
ENST00000320307	[[159888566, 159888731], [159889063, 159889166], [159889450, 159889625], [159890119, 159890327], [159894283, 159894341]]	[[159888589, 159888731], [159889063, 159889166], [159889450, 159889625], [159890119, 159890299]]
ENST00000397334	[[159888627, 159888731], [159889063, 159889166], [159889450, 159889625], [159890119, 159890327], [159894808, 159895019]]	[[159888627, 159888731], [159889063, 159889166], [159889450, 159889625], [159890119, 159890299]]
NM_001277224	[[159887896, 159888731], [159889063, 159889166], [159889450, 159889625], [159890119, 159890327], [159893225, 159893507]]	[[159888589, 159888731], [159889063, 159889166], [159889450, 159889625], [159890119, 159890327], [159893225, 159893260]]
NM_001277223	[[159887896, 159888731], [159889063, 159889166], [159889450, 159889625], [159890119, 159890327], [159894283, 159894341]]	[[159888589, 159888731], [159889063, 159889166], [159889450, 159889625], [159890119, 159890299]]
NM_003564	[[159887896, 159888731], [159889063, 159889166], [159889450, 159889625], [159890119, 159890327], [159895239, 159895332]]	[[159888589, 159888731], [159889063, 159889166], [159889450, 159889625], [159890119, 159890299]]

Promoter

Chrom	Start	End	Description
chr1	159888413	159888444	CAGE_peak_7_at_TAGLN2_5end
chr1	159888451	159888482	CAGE_peak_6_at_TAGLN2_5end
chr1	159888558	159888585	CAGE_peak_9_at_TAGLN2_5end
chr1	159893402	159893413	CAGE_peak_20_at_TAGLN2_5end
chr1	159893511	159893537	CAGE_peak_4_at_TAGLN2_5end
chr1	159894319	159894392	CAGE_peak_5_at_TAGLN2_5end
chr1	159895266	159895275	CAGE_peak_2_at_TAGLN2_5end
chr1	159895286	159895305	CAGE_peak_1_at_CCDC19_5end,CAGE_peak_1_at_TAGLN2_5end
chr1	159895326	159895335	CAGE_peak_2_at_CCDC19_5end,CAGE_peak_3_at_TAGLN2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I159928	159928818	159930076	0.88	[{'connected_gene': 'TAGLN2', 'score': 0.77}, {'connected_gene': 'IGSF9', 'score': 0.37}]
chr1	GH01I159908	159908211	159926755	2.87	[{'connected_gene': 'TAGLN2', 'score': 559.83}, {'connected_gene': 'GC01M159919', 'score': 550.77}, {'connected_gene': 'GC01M159886', 'score': 550.77}, {'connected_gene': 'LOC100287049', 'score': 34.57}, {'connected_gene': 'NCSTN', 'score': 32.37}, {'connected_gene': 'SLAMF8', 'score': 31.57}, {'connected_gene': 'RAD1P2', 'score': 30.68}, {'connected_gene': 'ENSG00000272668', 'score': 20.86}, {'connected_gene': 'SNHG28', 'score': 17.8}, {'connected_gene': 'VSIG8', 'score': 13.81}, {'connected_gene': 'DCAF8', 'score': 11.97}, {'connected_gene': 'COPA', 'score': 10.55}, {'connected_gene': 'ENSG00000256029', 'score': 9.99}, {'connected_gene': 'FCRL6', 'score': 7.6}, {'connected_gene': 'ENSG00000279430', 'score': 0.44}]
chr1	GH01I159936	159936201	159946713	2.66	[{'connected_gene': 'IGSF9', 'score': 559.99}, {'connected_gene': 'ATP1A4', 'score': 51.6}, {'connected_gene': 'KCNJ10', 'score': 12.41}, {'connected_gene': 'NHLH1', 'score': 6.2}, {'connected_gene': 'LINC01133', 'score': 6.08}, {'connected_gene': 'VSIG8', 'score': 5.95}, {'connected_gene': 'CFAP45', 'score': 4.42}, {'connected_gene': 'VANGL2', 'score': 2.07}, {'connected_gene': 'TAGLN2', 'score': 0.37}]
chr1	GH01I159881	159881288	159882982	1.61	[{'connected_gene': 'RPSAP18', 'score': 36.6}, {'connected_gene': 'ENSG00000272668', 'score': 32.19}, {'connected_gene': 'SNHG28', 'score': 31.7}, {'connected_gene': 'LOC100287049', 'score': 22.64}, {'connected_gene': 'SLAMF8', 'score': 12.57}, {'connected_gene': 'PIGM', 'score': 12.13}, {'connected_gene': 'DCAF8', 'score': 11.34}, {'connected_gene': 'CADM3', 'score': 11.13}, {'connected_gene': 'CADM3-AS1', 'score': 10.32}, {'connected_gene': 'COPA', 'score': 9.98}, {'connected_gene': 'VSIG8', 'score': 6.77}, {'connected_gene': 'SLAMF9', 'score': 5.45}, {'connected_gene': 'TAGLN2', 'score': 2.04}, {'connected_gene': 'ENSG00000256029', 'score': 0.44}, {'connected_gene': 'CFAP45', 'score': 0.37}, {'connected_gene': 'MIR4259', 'score': 0.37}]
chr1	GH01I160346	160346001	160347800	1.08	[{'connected_gene': 'NCSTN', 'score': 34.96}, {'connected_gene': 'IGSF8', 'score': 9.78}, {'connected_gene': 'COPA', 'score': 6.37}, {'connected_gene': 'TAGLN2', 'score': 2.52}, {'connected_gene': 'CD48', 'score': 2.14}, {'connected_gene': 'SLAMF7', 'score': 1.57}, {'connected_gene': 'GC01P160354', 'score': 0.44}, {'connected_gene': 'NHLH1', 'score': 0.21}]
chr1	GH01I159848	159848591	159850463	1.09	[{'connected_gene': 'ENSG00000272668', 'score': 47.09}, {'connected_gene': 'SLAMF9', 'score': 4.37}, {'connected_gene': 'SLAMF8', 'score': 1.74}, {'connected_gene': 'TAGLN2', 'score': 1.31}, {'connected_gene': 'GC01M159841', 'score': 0.77}, {'connected_gene': 'ENSG00000212161', 'score': 0.77}, {'connected_gene': 'GC01M159852', 'score': 0.77}, {'connected_gene': 'SNHG28', 'score': 0.44}]
chr1	GH01I159932	159932679	159934006	0.69	[{'connected_gene': 'ENSG00000212161', 'score': 9.79}, {'connected_gene': 'TAGLN2', 'score': 0.44}, {'connected_gene': 'IGSF9', 'score': 0.39}]
chr1	GH01I159888	159888967	159891999	1.66	[{'connected_gene': 'ENSG00000272668', 'score': 34.46}, {'connected_gene': 'SLAMF8', 'score': 17.04}, {'connected_gene': 'SNHG28', 'score': 16.35}, {'connected_gene': 'FCRL6', 'score': 12.13}, {'connected_gene': 'VSIG8', 'score': 11.62}, {'connected_gene': 'ENSG00000212161', 'score': 11.59}, {'connected_gene': 'IGSF9', 'score': 10.93}, {'connected_gene': 'DUSP23', 'score': 10.84}, {'connected_gene': 'PIGM', 'score': 9.57}, {'connected_gene': 'SLAMF9', 'score': 5.85}, {'connected_gene': 'TAGLN2', 'score': 2.78}, {'connected_gene': 'COPA', 'score': 1.22}, {'connected_gene': 'MIR4259', 'score': 0.44}, {'connected_gene': 'CFAP45', 'score': 0.44}, {'connected_gene': 'ENSG00000256029', 'score': 0.37}, {'connected_gene': 'GC01M159886', 'score': 0.31}]