PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Promoter

Chrom	Start	End	Description
chr4	147442817	147442829	CAGE_peak_4_at_SLC10A7_5end
chr4	147443001	147443019	CAGE_peak_2_at_SLC10A7_5end
chr4	147443027	147443038	CAGE_peak_3_at_SLC10A7_5end
chr4	147443043	147443113	CAGE_peak_1_at_SLC10A7_5end
chr4	147443475	147443486	CAGE_peak_6_at_SLC10A7_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr4	GH04I146511	146511401	146511800	0.62	[{'connected_gene': 'SLC10A7', 'score': 0.39}, {'connected_gene': 'MIR7849', 'score': 0.15}]
chr4	GH04I146519	146519623	146523296	1.99	[{'connected_gene': 'SLC10A7', 'score': 559.99}, {'connected_gene': 'MIR7849', 'score': 0.14}]
chr4	GH04I146467	146467769	146467878	0.38	[{'connected_gene': 'SLC10A7', 'score': 0.23}, {'connected_gene': 'MIR7849', 'score': 0.22}]
chr4	GH04I145769	145769601	145770200	0.64	[{'connected_gene': 'OTUD4', 'score': 21.31}, {'connected_gene': 'ENSG00000248356', 'score': 13.58}, {'connected_gene': 'SLC10A7', 'score': 12.19}, {'connected_gene': 'LSM6', 'score': 9.82}, {'connected_gene': 'GC04M145759', 'score': 0.44}, {'connected_gene': 'ENSG00000279481', 'score': 0.21}, {'connected_gene': 'C4orf51', 'score': 0.17}, {'connected_gene': 'ZNF827', 'score': 0.1}]
chr4	GH04I145812	145812255	145813860	0.97	[{'connected_gene': 'OTUD4', 'score': 29.87}, {'connected_gene': 'ENSG00000248356', 'score': 13.55}, {'connected_gene': 'SLC10A7', 'score': 12.19}, {'connected_gene': 'ANAPC10', 'score': 10.03}, {'connected_gene': 'LSM6', 'score': 9.83}, {'connected_gene': 'ENSG00000279481', 'score': 0.37}, {'connected_gene': 'GC04M145759', 'score': 0.23}, {'connected_gene': 'ZNF827', 'score': 0.13}]
chr4	GH04I146255	146255112	146256952	0.54	[{'connected_gene': 'REELD1', 'score': 10.45}, {'connected_gene': 'SLC10A7', 'score': 5.47}, {'connected_gene': 'ENSG00000251010', 'score': 0.39}, {'connected_gene': 'LOC105377472', 'score': 0.28}]
chr4	GH04I145934	145934299	145940489	2.03	[{'connected_gene': 'ZNF827', 'score': 561.83}, {'connected_gene': 'GC04M145938', 'score': 550.77}, {'connected_gene': 'SLC10A7', 'score': 13.35}, {'connected_gene': 'LSM6', 'score': 10.03}, {'connected_gene': 'PIR42534', 'score': 0.39}]
chr4	GH04I146273	146273244	146273805	0.84	[{'connected_gene': 'ZNF827', 'score': 1.91}, {'connected_gene': 'LSM6', 'score': 1.85}, {'connected_gene': 'LOC105377472', 'score': 0.34}, {'connected_gene': 'ENSG00000251010', 'score': 0.29}, {'connected_gene': 'SLC10A7', 'score': 0.07}]
chr4	GH04I146458	146458025	146459070	0.84	[{'connected_gene': 'LSM6', 'score': 1.22}, {'connected_gene': 'MIR7849', 'score': 0.25}, {'connected_gene': 'SLC10A7', 'score': 0.21}]
chr4	GH04I146275	146275367	146275658	0.68	[{'connected_gene': 'LOC105377472', 'score': 0.37}, {'connected_gene': 'ENSG00000251010', 'score': 0.29}, {'connected_gene': 'SLC10A7', 'score': 0.07}]
chr4	GH04I146294	146294201	146294555	0.4	[{'connected_gene': 'LOC105377472', 'score': 550.77}, {'connected_gene': 'ENSG00000251010', 'score': 10.75}, {'connected_gene': 'REELD1', 'score': 9.94}, {'connected_gene': 'SLC10A7', 'score': 0.07}]
chr4	GH04I146453	146453264	146453597	0.58	[{'connected_gene': 'MIR7849', 'score': 0.26}, {'connected_gene': 'SLC10A7', 'score': 0.2}]
chr4	GH04I146407	146407293	146408499	1.02	[{'connected_gene': 'MIR7849', 'score': 550.77}, {'connected_gene': 'GC04P146380', 'score': 0.31}, {'connected_gene': 'SLC10A7', 'score': 0.14}]
chr4	GH04I146333	146333401	146334378	0.9	[{'connected_gene': 'ENSG00000251010', 'score': 11.14}, {'connected_gene': 'POU4F2', 'score': 10.08}, {'connected_gene': 'LOC105377472', 'score': 0.28}, {'connected_gene': 'GC04P146380', 'score': 0.26}, {'connected_gene': 'SLC10A7', 'score': 0.09}]
chr4	GH04I146328	146328220	146331183	0.91	[{'connected_gene': 'ENSG00000251010', 'score': 11.15}, {'connected_gene': 'POU4F2', 'score': 9.82}, {'connected_gene': 'LOC105377472', 'score': 0.29}, {'connected_gene': 'GC04P146380', 'score': 0.25}, {'connected_gene': 'SLC10A7', 'score': 0.08}]
chr4	GH04I146269	146269388	146269629	0.73	[{'connected_gene': 'ENSG00000251010', 'score': 10.92}, {'connected_gene': 'REELD1', 'score': 9.85}, {'connected_gene': 'POU4F2', 'score': 9.32}, {'connected_gene': 'ZNF827', 'score': 1.53}, {'connected_gene': 'LSM6', 'score': 1.49}, {'connected_gene': 'LOC105377472', 'score': 0.31}, {'connected_gene': 'SLC10A7', 'score': 0.07}]
chr4	GH04I146263	146263661	146264153	0.58	[{'connected_gene': 'ENSG00000251010', 'score': 11.52}, {'connected_gene': 'REELD1', 'score': 9.84}, {'connected_gene': 'LOC105377472', 'score': 0.29}, {'connected_gene': 'SLC10A7', 'score': 0.07}]
chr4	GH04I146271	146271501	146271752	0.73	[{'connected_gene': 'ENSG00000251010', 'score': 11.17}, {'connected_gene': 'ZNF827', 'score': 1.45}, {'connected_gene': 'SLC10A7', 'score': 1.25}, {'connected_gene': 'LOC105377472', 'score': 0.34}]
chr4	GH04I146262	146262736	146262870	0.22	[{'connected_gene': 'ENSG00000251010', 'score': 0.34}, {'connected_gene': 'LOC105377472', 'score': 0.29}, {'connected_gene': 'SLC10A7', 'score': 0.07}]

Transcript ID	Transcript exon region	Coding exon region
ENST00000432059	[[147175126, 147177672], [147179843, 147179989], [147204343, 147204417], [147214080, 147214132], [147215081, 147215247], [147227077, 147227161], [147247112, 147247148], [147425000, 147425076], [147431064, 147431201], [147438189, 147438272], [147442769, 147443116]]	[[147177642, 147177672], [147179843, 147179989], [147204343, 147204417], [147214080, 147214132], [147215081, 147215247], [147227077, 147227161], [147247112, 147247148], [147425000, 147425076], [147431064, 147431201], [147438189, 147438272], [147442769, 147442869]]
ENST00000335472	[[147176083, 147177672], [147179843, 147179989], [147204343, 147204417], [147214080, 147214132], [147215081, 147215247], [147227077, 147227161], [147247112, 147247148], [147363934, 147363973], [147425000, 147425076], [147431064, 147431201], [147438189, 147438272], [147442769, 147443085]]	[[147177642, 147177672], [147179843, 147179989], [147204343, 147204417], [147214080, 147214132], [147215081, 147215247], [147227077, 147227161], [147247112, 147247148], [147363934, 147363973], [147425000, 147425076], [147431064, 147431201], [147438189, 147438272], [147442769, 147442869]]
ENST00000264986	[[147177178, 147177672], [147179843, 147179989], [147204343, 147204417], [147214080, 147214132], [147215081, 147215247], [147227077, 147227161], [147247112, 147247148], [147363934, 147363973], [147425000, 147425076], [147438189, 147438272], [147442769, 147442991]]	[[147425001, 147425076], [147438189, 147438272], [147442769, 147442869]]
ENST00000507030	[[147177642, 147177672], [147177977, 147178088], [147179843, 147179989], [147204343, 147204417], [147214080, 147214132], [147215081, 147215247], [147227077, 147227161], [147247112, 147247148], [147363934, 147363973], [147425000, 147425076], [147431064, 147431201], [147438189, 147438272], [147442769, 147442869]]	[[147178004, 147178088], [147179843, 147179989], [147204343, 147204417], [147214080, 147214132], [147215081, 147215247], [147227077, 147227161], [147247112, 147247148], [147363934, 147363973], [147425000, 147425076], [147431064, 147431201], [147438189, 147438272], [147442769, 147442869]]
ENST00000394062	[[147178004, 147178088], [147179843, 147179989], [147204343, 147204417], [147214080, 147214132], [147215081, 147215247], [147227077, 147227161], [147247112, 147247148], [147363934, 147363973], [147425000, 147425076], [147431064, 147431201], [147438189, 147438272], [147442769, 147443123]]	[[147178004, 147178088], [147179843, 147179989], [147204343, 147204417], [147214080, 147214132], [147215081, 147215247], [147227077, 147227161], [147247112, 147247148], [147363934, 147363973], [147425000, 147425076], [147431064, 147431201], [147438189, 147438272], [147442769, 147442869]]
ENST00000507560	[[147247112, 147247148], [147363934, 147363973], [147438189, 147438272], [147442769, 147443025]]	None
ENST00000394059	[[147362817, 147363973], [147425000, 147425076], [147431064, 147431201], [147438189, 147438272], [147442769, 147443047]]	[[147363889, 147363973], [147425000, 147425076], [147431064, 147431201], [147438189, 147438272], [147442769, 147442869]]
ENST00000511315	[[147363469, 147363973], [147425000, 147425076], [147431064, 147431201], [147438189, 147438272], [147442769, 147442982]]	None
ENST00000511374	[[147363476, 147363973], [147425000, 147425076], [147438189, 147438272], [147442769, 147442982]]	[[147425001, 147425076], [147438189, 147438272], [147442769, 147442869]]
ENST00000513583	[[147399030, 147399453], [147425000, 147425055]]	None
ENST00000502607	[[147435053, 147436303], [147438189, 147438272], [147442769, 147443074]]	[[147436291, 147436303], [147438189, 147438272], [147442769, 147442869]]
NM_001300842	[[147175138, 147177672], [147177977, 147178088], [147179843, 147179989], [147204343, 147204417], [147214080, 147214132], [147215081, 147215247], [147227077, 147227161], [147247112, 147247148], [147363934, 147363973], [147425000, 147425076], [147431064, 147431201], [147438189, 147438272], [147442769, 147443123]]	[[147178004, 147178088], [147179843, 147179989], [147204343, 147204417], [147214080, 147214132], [147215081, 147215247], [147227077, 147227161], [147247112, 147247148], [147363934, 147363973], [147425000, 147425076], [147431064, 147431201], [147438189, 147438272], [147442769, 147442869]]
NM_001029998	[[147175138, 147177672], [147179843, 147179989], [147204343, 147204417], [147214080, 147214132], [147215081, 147215247], [147227077, 147227161], [147247112, 147247148], [147363934, 147363973], [147425000, 147425076], [147431064, 147431201], [147438189, 147438272], [147442769, 147443123]]	[[147177642, 147177672], [147179843, 147179989], [147204343, 147204417], [147214080, 147214132], [147215081, 147215247], [147227077, 147227161], [147247112, 147247148], [147363934, 147363973], [147425000, 147425076], [147431064, 147431201], [147438189, 147438272], [147442769, 147442869]]
NR_133924	[[147175138, 147177672], [147179843, 147179989], [147204343, 147204417], [147227077, 147227161], [147247112, 147247148], [147363934, 147363973], [147425000, 147425076], [147431064, 147431201], [147438189, 147438272], [147442769, 147443123]]	None
NM_001317816	[[147175138, 147177672], [147179843, 147179989], [147204343, 147204417], [147214080, 147214132], [147215081, 147215247], [147227077, 147227161], [147247112, 147247148], [147425000, 147425076], [147431064, 147431201], [147438189, 147438272], [147442769, 147443123]]	[[147177642, 147177672], [147179843, 147179989], [147204343, 147204417], [147214080, 147214132], [147215081, 147215247], [147227077, 147227161], [147247112, 147247148], [147425000, 147425076], [147431064, 147431201], [147438189, 147438272], [147442769, 147442869]]
NM_032128	[[147362816, 147363973], [147425000, 147425076], [147431064, 147431201], [147438189, 147438272], [147442769, 147443123]]	[[147363889, 147363973], [147425000, 147425076], [147431064, 147431201], [147438189, 147438272], [147442769, 147442869]]
NM_001317817	[[147362816, 147363973], [147425000, 147425076], [147438189, 147438272], [147442769, 147443123]]	[[147425001, 147425076], [147438189, 147438272], [147442769, 147442869]]
NM_001317818	[[147435053, 147436303], [147438189, 147438272], [147442769, 147443123]]	[[147436291, 147436303], [147438189, 147438272], [147442769, 147442869]]