PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000373229	[[39282473, 39282905], [39284077, 39284218], [39284557, 39284723], [39285561, 39285728], [39286794, 39286909], [39290103, 39290330]]	[[39282777, 39282905], [39284077, 39284218], [39284557, 39284723], [39285561, 39285728], [39286794, 39286909], [39290103, 39290316]]
ENST00000425054	[[39282596, 39283207], [39284557, 39284723], [39285561, 39285728], [39286794, 39286909], [39290103, 39290316]]	[[39282899, 39283207], [39284557, 39284723], [39285561, 39285728], [39286794, 39286909], [39290103, 39290316]]
ENST00000507712	[[39282723, 39282905], [39284557, 39284723], [39285561, 39285728], [39286794, 39286909], [39290103, 39290217], [39290599, 39290744]]	[[39282777, 39282905], [39284557, 39284723], [39285561, 39285728], [39286794, 39286909], [39290103, 39290121]]
ENST00000373227	[[39282777, 39282905], [39284557, 39284723], [39285561, 39285728], [39286794, 39286909], [39290103, 39290316]]	[[39282777, 39282905], [39284557, 39284723], [39285561, 39285728], [39286794, 39286909], [39290103, 39290316]]
ENST00000437525	[[39283946, 39284218], [39284557, 39284723], [39285561, 39285728], [39286794, 39286909], [39290103, 39290364]]	[[39283994, 39284218], [39284557, 39284723], [39285561, 39285728], [39286794, 39286909], [39290103, 39290316]]
NM_032115	[[39282473, 39282905], [39284077, 39284218], [39284557, 39284723], [39285561, 39285728], [39286794, 39286909], [39290103, 39290330]]	[[39282777, 39282905], [39284077, 39284218], [39284557, 39284723], [39285561, 39285728], [39286794, 39286909], [39290103, 39290316]]
NM_001135105	[[39282473, 39283207], [39284557, 39284723], [39285561, 39285728], [39286794, 39286909], [39290103, 39290330]]	[[39282899, 39283207], [39284557, 39284723], [39285561, 39285728], [39286794, 39286909], [39290103, 39290316]]
NM_001135107	[[39282473, 39282905], [39284557, 39284723], [39285561, 39285728], [39286794, 39286909], [39290103, 39290330]]	[[39282777, 39282905], [39284557, 39284723], [39285561, 39285728], [39286794, 39286909], [39290103, 39290316]]
NM_001135106	[[39283946, 39284218], [39284557, 39284723], [39285561, 39285728], [39286794, 39286909], [39290103, 39290330]]	[[39283994, 39284218], [39284557, 39284723], [39285561, 39285728], [39286794, 39286909], [39290103, 39290316]]

Promoter

Chrom	Start	End	Description
chr6	39290371	39290388	CAGE_peak_4_at_KCNK16_5end
chr6	39290407	39290416	CAGE_peak_5_at_KCNK16_5end
chr6	39290436	39290454	CAGE_peak_3_at_KCNK16_5end
chr6	39290466	39290482	CAGE_peak_2_at_KCNK16_5end
chr6	39290499	39290502	CAGE_peak_8_at_KCNK16_5end
chr6	39290752	39290794	CAGE_peak_1_at_KCNK16_5end
chr6	39290815	39290820	CAGE_peak_6_at_KCNK16_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr6	GH06I039272	39272865	39273824	0.31	[{'connected_gene': 'KCNK17', 'score': 11.9}, {'connected_gene': 'KCNK5', 'score': 11.58}, {'connected_gene': 'KCNK16', 'score': 10.99}, {'connected_gene': 'GLP1R', 'score': 10.6}, {'connected_gene': 'SAYSD1', 'score': 10.35}, {'connected_gene': 'PIR44224', 'score': 0.29}, {'connected_gene': 'GC06M039593', 'score': 0.12}]
chr6	GH06I039273	39272203	39272752	0.31	[{'connected_gene': 'KCNK17', 'score': 16.21}, {'connected_gene': 'KCNK5', 'score': 11.42}, {'connected_gene': 'GLP1R', 'score': 10.6}, {'connected_gene': 'KCNK16', 'score': 10.08}, {'connected_gene': 'SAYSD1', 'score': 9.9}, {'connected_gene': 'PIR44224', 'score': 0.28}, {'connected_gene': 'GC06M039593', 'score': 0.12}]
chr6	GH06I039266	39266945	39267094	0.57	[{'connected_gene': 'KCNK17', 'score': 11.88}, {'connected_gene': 'KCNK5', 'score': 11.43}, {'connected_gene': 'GLP1R', 'score': 10.61}, {'connected_gene': 'KCNK16', 'score': 10.07}, {'connected_gene': 'SAYSD1', 'score': 9.9}, {'connected_gene': 'PIR44224', 'score': 0.26}, {'connected_gene': 'GC06M039593', 'score': 0.12}]
chr6	GH06I039269	39269655	39271677	0.69	[{'connected_gene': 'KCNK17', 'score': 16.46}, {'connected_gene': 'KCNK5', 'score': 11.42}, {'connected_gene': 'GLP1R', 'score': 10.6}, {'connected_gene': 'KCNK16', 'score': 10.08}, {'connected_gene': 'SAYSD1', 'score': 9.9}, {'connected_gene': 'PIR44224', 'score': 0.28}, {'connected_gene': 'GC06M039593', 'score': 0.12}]
chr6	GH06I039267	39267838	39269028	0.43	[{'connected_gene': 'KCNK17', 'score': 11.88}, {'connected_gene': 'KCNK5', 'score': 11.43}, {'connected_gene': 'GLP1R', 'score': 10.61}, {'connected_gene': 'KCNK16', 'score': 10.08}, {'connected_gene': 'SAYSD1', 'score': 9.9}, {'connected_gene': 'PIR44224', 'score': 0.28}, {'connected_gene': 'GC06M039593', 'score': 0.12}]
chr6	GH06I039361	39361879	39362965	1.12	[{'connected_gene': 'KCNK17', 'score': 18.33}, {'connected_gene': 'KCNK16', 'score': 11.12}, {'connected_gene': 'LOC100124373', 'score': 0.44}, {'connected_gene': 'GC06M039593', 'score': 0.26}, {'connected_gene': 'KIF6', 'score': 0.05}]
chr6	GH06I039358	39358200	39358400	0.63	[{'connected_gene': 'KCNK17', 'score': 11.77}, {'connected_gene': 'KCNK16', 'score': 11.12}, {'connected_gene': 'LOC100124373', 'score': 0.77}, {'connected_gene': 'GC06M039593', 'score': 0.25}, {'connected_gene': 'KIF6', 'score': 0.05}]
chr6	GH06I039335	39335790	39336545	0.63	[{'connected_gene': 'KCNK17', 'score': 17.01}, {'connected_gene': 'KCNK16', 'score': 0.39}, {'connected_gene': 'LOC100124373', 'score': 0.37}, {'connected_gene': 'LOC105375047', 'score': 0.34}, {'connected_gene': 'GC06M039593', 'score': 0.19}, {'connected_gene': 'KIF6', 'score': 0.05}]
chr6	GH06I039347	39347020	39348116	0.59	[{'connected_gene': 'KCNK17', 'score': 8.85}, {'connected_gene': 'KIF6', 'score': 4.31}, {'connected_gene': 'LOC100124373', 'score': 0.44}, {'connected_gene': 'KCNK16', 'score': 0.34}, {'connected_gene': 'GC06M039593', 'score': 0.22}]
chr6	GH06I039312	39312908	39313315	0.59	[{'connected_gene': 'KCNK17', 'score': 579.7}, {'connected_gene': 'LOC105375047', 'score': 550.77}, {'connected_gene': 'KCNK16', 'score': 41.6}, {'connected_gene': 'GLP1R', 'score': 2.34}, {'connected_gene': 'SAYSD1', 'score': 1.81}, {'connected_gene': 'GC06M039592', 'score': 0.77}, {'connected_gene': 'GC06M039593', 'score': 0.16}]
chr6	GH06I039315	39315976	39316612	0.2	[{'connected_gene': 'KCNK17', 'score': 565.82}, {'connected_gene': 'LOC105375047', 'score': 0.77}, {'connected_gene': 'KCNK16', 'score': 0.44}, {'connected_gene': 'GC06M039593', 'score': 0.16}]
chr6	GH06I039344	39344356	39345861	0.54	[{'connected_gene': 'KCNK17', 'score': 7.02}, {'connected_gene': 'LOC100124373', 'score': 0.44}, {'connected_gene': 'KCNK16', 'score': 0.34}, {'connected_gene': 'GC06M039593', 'score': 0.21}, {'connected_gene': 'KIF6', 'score': 0.05}]
chr6	GH06I039178	39178143	39182005	0.38	[{'connected_gene': 'KCNK5', 'score': 18.9}, {'connected_gene': 'KCNK17', 'score': 12.07}, {'connected_gene': 'ANKRD18EP', 'score': 12.06}, {'connected_gene': 'KCNK16', 'score': 10.67}, {'connected_gene': 'PIR34969', 'score': 0.29}, {'connected_gene': 'GC06M039593', 'score': 0.07}]
chr6	GH06I039323	39323625	39331358	0.6	[{'connected_gene': 'KCNK5', 'score': 10.11}, {'connected_gene': 'SAYSD1', 'score': 9.65}, {'connected_gene': 'KCNK17', 'score': 9.49}, {'connected_gene': 'KCNK16', 'score': 0.77}, {'connected_gene': 'LOC105375047', 'score': 0.39}, {'connected_gene': 'LOC100124373', 'score': 0.31}, {'connected_gene': 'GC06M039593', 'score': 0.18}, {'connected_gene': 'KIF6', 'score': 0.05}]
chr6	GH06I039256	39256319	39256859	0.38	[{'connected_gene': 'KCNK5', 'score': 11.96}, {'connected_gene': 'SAYSD1', 'score': 10.53}, {'connected_gene': 'KCNK16', 'score': 10.06}, {'connected_gene': 'PIR44224', 'score': 0.23}, {'connected_gene': 'GC06M039593', 'score': 0.1}]
chr6	GH06I039320	39320154	39320510	0.59	[{'connected_gene': 'KCNK16', 'score': 61.58}, {'connected_gene': 'KCNK17', 'score': 29.62}, {'connected_gene': 'GLP1R', 'score': 2.15}, {'connected_gene': 'SAYSD1', 'score': 1.8}, {'connected_gene': 'LOC105375047', 'score': 0.44}, {'connected_gene': 'GC06M039593', 'score': 0.17}]
chr6	GH06I039322	39322471	39322530	0.7	[{'connected_gene': 'KCNK16', 'score': 550.77}, {'connected_gene': 'LOC105375047', 'score': 0.44}, {'connected_gene': 'KCNK17', 'score': 0.44}, {'connected_gene': 'GC06M039593', 'score': 0.18}]
chr6	GH06I039365	39365609	39366276	0.46	[{'connected_gene': 'KCNK16', 'score': 11.59}, {'connected_gene': 'LOC100505635', 'score': 10.7}, {'connected_gene': 'LOC100124373', 'score': 0.39}, {'connected_gene': 'GC06M039593', 'score': 0.26}, {'connected_gene': 'KIF6', 'score': 0.05}]
chr6	GH06I039366	39366890	39367266	0.42	[{'connected_gene': 'KCNK16', 'score': 11.59}, {'connected_gene': 'LOC100505635', 'score': 10.7}, {'connected_gene': 'LOC100124373', 'score': 0.39}, {'connected_gene': 'GC06M039593', 'score': 0.28}, {'connected_gene': 'KIF6', 'score': 0.05}]
chr6	GH06I039067	39067253	39069193	0.31	[{'connected_gene': 'SAYSD1', 'score': 16.83}, {'connected_gene': 'KCNK17', 'score': 10.82}, {'connected_gene': 'KCNK16', 'score': 10.23}, {'connected_gene': 'KCNK5', 'score': 9.91}, {'connected_gene': 'GLP1R', 'score': 5.3}, {'connected_gene': 'LOC105375046', 'score': 0.39}]
chr6	GH06I039349	39349634	39349663	0.26	[{'connected_gene': 'LOC100124373', 'score': 0.77}, {'connected_gene': 'KCNK16', 'score': 0.31}, {'connected_gene': 'GC06M039593', 'score': 0.22}, {'connected_gene': 'KIF6', 'score': 0.05}]
chr6	GH06I039342	39342426	39343890	0.83	[{'connected_gene': 'LOC100124373', 'score': 0.39}, {'connected_gene': 'KCNK16', 'score': 0.34}, {'connected_gene': 'LOC105375047', 'score': 0.31}, {'connected_gene': 'GC06M039593', 'score': 0.21}, {'connected_gene': 'KIF6', 'score': 0.05}]