PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
NM_003548	[[149804220, 149804616]]	[[149804248, 149804560]]

Promoter

Chrom	Start	End	Description
chr12	14924056	14924073	CAGE_peak_7_at_HIST1H4A_5end,CAGE_peak_7_at_HIST1H4B_5end,CAGE_peak_7_at_HIST1H4D_5end,CAGE_peak_7_at_HIST1H4E_5end,CAGE_peak_7_at_HIST1H4H_5end,CAGE_peak_7_at_HIST1H4I_5end,CAGE_peak_7_at_HIST1H4J_5end,CAGE_peak_7_at_HIST1H4K_5end,CAGE_peak_7_at_HIST1H4L_5end,CAGE_peak_7_at_HIST2H4A_5end,CAGE_peak_7_at_HIST2H4B_5end,CAGE_peak_7_at_HIST4H4_5end,CAGE_peak_8_at_HIST1H4C_5end,CAGE_peak_8_at_HIST1H4F_5end
chr6	26021769	26021778	CAGE_peak_11_at_HIST1H4A_5end,CAGE_peak_11_at_HIST1H4B_5end,CAGE_peak_11_at_HIST1H4D_5end,CAGE_peak_11_at_HIST1H4E_5end,CAGE_peak_11_at_HIST1H4H_5end,CAGE_peak_11_at_HIST1H4I_5end,CAGE_peak_11_at_HIST1H4J_5end,CAGE_peak_11_at_HIST1H4K_5end,CAGE_peak_11_at_HIST1H4L_5end,CAGE_peak_11_at_HIST4H4_5end,CAGE_peak_12_at_HIST1H4C_5end,CAGE_peak_12_at_HIST1H4F_5end,CAGE_peak_12_at_HIST2H4A_5end,CAGE_peak_12_at_HIST2H4B_5end
chr6	26021780	26021816	CAGE_peak_10_at_HIST1H4A_5end,CAGE_peak_10_at_HIST1H4B_5end,CAGE_peak_10_at_HIST1H4D_5end,CAGE_peak_10_at_HIST1H4E_5end,CAGE_peak_10_at_HIST1H4H_5end,CAGE_peak_10_at_HIST1H4I_5end,CAGE_peak_10_at_HIST1H4J_5end,CAGE_peak_10_at_HIST1H4K_5end,CAGE_peak_10_at_HIST1H4L_5end,CAGE_peak_10_at_HIST2H4A_5end,CAGE_peak_10_at_HIST2H4B_5end,CAGE_peak_10_at_HIST4H4_5end,CAGE_peak_11_at_HIST1H4C_5end,CAGE_peak_11_at_HIST1H4F_5end
chr6	26021869	26021887	CAGE_peak_8_at_HIST1H4A_5end,CAGE_peak_8_at_HIST1H4B_5end,CAGE_peak_8_at_HIST1H4D_5end,CAGE_peak_8_at_HIST1H4E_5end,CAGE_peak_8_at_HIST1H4H_5end,CAGE_peak_8_at_HIST1H4I_5end,CAGE_peak_8_at_HIST1H4J_5end,CAGE_peak_8_at_HIST1H4K_5end,CAGE_peak_8_at_HIST1H4L_5end,CAGE_peak_8_at_HIST2H4A_5end,CAGE_peak_8_at_HIST2H4B_5end,CAGE_peak_8_at_HIST4H4_5end,CAGE_peak_9_at_HIST1H4C_5end,CAGE_peak_9_at_HIST1H4F_5end
chr6	26027503	26027522	CAGE_peak_2_at_HIST1H4A_5end,CAGE_peak_2_at_HIST1H4B_5end,CAGE_peak_2_at_HIST1H4D_5end,CAGE_peak_2_at_HIST1H4E_5end,CAGE_peak_2_at_HIST1H4F_5end,CAGE_peak_2_at_HIST1H4H_5end,CAGE_peak_2_at_HIST1H4I_5end,CAGE_peak_2_at_HIST1H4J_5end,CAGE_peak_2_at_HIST1H4K_5end,CAGE_peak_2_at_HIST1H4L_5end,CAGE_peak_2_at_HIST2H4A_5end,CAGE_peak_2_at_HIST2H4B_5end,CAGE_peak_2_at_HIST4H4_5end,CAGE_peak_3_at_HIST1H4C_5end
chr6	26189331	26189346	CAGE_peak_3_at_HIST1H4A_5end,CAGE_peak_3_at_HIST1H4B_5end,CAGE_peak_3_at_HIST1H4D_5end,CAGE_peak_3_at_HIST1H4E_5end,CAGE_peak_3_at_HIST1H4F_5end,CAGE_peak_3_at_HIST1H4H_5end,CAGE_peak_3_at_HIST1H4I_5end,CAGE_peak_3_at_HIST1H4J_5end,CAGE_peak_3_at_HIST1H4K_5end,CAGE_peak_3_at_HIST1H4L_5end,CAGE_peak_3_at_HIST2H4A_5end,CAGE_peak_3_at_HIST2H4B_5end,CAGE_peak_3_at_HIST4H4_5end,CAGE_peak_4_at_HIST1H4C_5end
chr6	26204825	26204845	CAGE_peak_1_at_HIST1H4A_5end,CAGE_peak_1_at_HIST1H4B_5end,CAGE_peak_1_at_HIST1H4D_5end,CAGE_peak_1_at_HIST1H4E_5end,CAGE_peak_1_at_HIST1H4F_5end,CAGE_peak_1_at_HIST1H4H_5end,CAGE_peak_1_at_HIST1H4I_5end,CAGE_peak_1_at_HIST1H4J_5end,CAGE_peak_1_at_HIST1H4K_5end,CAGE_peak_1_at_HIST1H4L_5end,CAGE_peak_1_at_HIST2H4A_5end,CAGE_peak_1_at_HIST2H4B_5end,CAGE_peak_1_at_HIST4H4_5end,CAGE_peak_2_at_HIST1H4C_5end
chr6	26285754	26285769	CAGE_peak_4_at_HIST1H4A_5end,CAGE_peak_4_at_HIST1H4B_5end,CAGE_peak_4_at_HIST1H4D_5end,CAGE_peak_4_at_HIST1H4E_5end,CAGE_peak_4_at_HIST1H4F_5end,CAGE_peak_4_at_HIST1H4H_5end,CAGE_peak_4_at_HIST1H4I_5end,CAGE_peak_4_at_HIST1H4J_5end,CAGE_peak_4_at_HIST1H4K_5end,CAGE_peak_4_at_HIST1H4L_5end,CAGE_peak_4_at_HIST2H4A_5end,CAGE_peak_4_at_HIST2H4B_5end,CAGE_peak_4_at_HIST4H4_5end,CAGE_peak_5_at_HIST1H4C_5end
chr6	27107053	27107068	CAGE_peak_6_at_HIST1H4A_5end,CAGE_peak_6_at_HIST1H4B_5end,CAGE_peak_6_at_HIST1H4D_5end,CAGE_peak_6_at_HIST1H4E_5end,CAGE_peak_6_at_HIST1H4F_5end,CAGE_peak_6_at_HIST1H4H_5end,CAGE_peak_6_at_HIST1H4I_5end,CAGE_peak_6_at_HIST1H4J_5end,CAGE_peak_6_at_HIST1H4K_5end,CAGE_peak_6_at_HIST1H4L_5end,CAGE_peak_6_at_HIST2H4A_5end,CAGE_peak_6_at_HIST2H4B_5end,CAGE_peak_6_at_HIST4H4_5end,CAGE_peak_7_at_HIST1H4C_5end
chr6	27791862	27791877	CAGE_peak_10_at_HIST1H4C_5end,CAGE_peak_10_at_HIST1H4F_5end,CAGE_peak_9_at_HIST1H4A_5end,CAGE_peak_9_at_HIST1H4B_5end,CAGE_peak_9_at_HIST1H4D_5end,CAGE_peak_9_at_HIST1H4E_5end,CAGE_peak_9_at_HIST1H4H_5end,CAGE_peak_9_at_HIST1H4I_5end,CAGE_peak_9_at_HIST1H4J_5end,CAGE_peak_9_at_HIST1H4K_5end,CAGE_peak_9_at_HIST1H4L_5end,CAGE_peak_9_at_HIST2H4A_5end,CAGE_peak_9_at_HIST2H4B_5end,CAGE_peak_9_at_HIST4H4_5end
chr6	27841303	27841318	CAGE_peak_5_at_HIST1H4A_5end,CAGE_peak_5_at_HIST1H4B_5end,CAGE_peak_5_at_HIST1H4D_5end,CAGE_peak_5_at_HIST1H4E_5end,CAGE_peak_5_at_HIST1H4F_5end,CAGE_peak_5_at_HIST1H4H_5end,CAGE_peak_5_at_HIST1H4I_5end,CAGE_peak_5_at_HIST1H4J_5end,CAGE_peak_5_at_HIST1H4K_5end,CAGE_peak_5_at_HIST1H4L_5end,CAGE_peak_5_at_HIST2H4A_5end,CAGE_peak_5_at_HIST2H4B_5end,CAGE_peak_5_at_HIST4H4_5end,CAGE_peak_6_at_HIST1H4C_5end
chr1	149804218	149804222	CAGE_peak_11_at_HIST2H4A_5end,CAGE_peak_11_at_HIST2H4B_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I149835	149835201	149835800	0.4	[{'connected_gene': 'HIST2H4A', 'score': 0.77}, {'connected_gene': 'HIST2H3C', 'score': 0.44}]
chr1	GH01I149831	149831200	149834201	1.2	[{'connected_gene': 'GC01M149831', 'score': 550.77}, {'connected_gene': 'HIST2H4A', 'score': 550.77}, {'connected_gene': 'HIST2H3C', 'score': 0.44}]