PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000536063	[[2985423, 2985681], [2997076, 2997334]]	None
ENST00000538636	[[2986364, 2986448], [2994428, 2994700], [2997076, 2997303]]	[[2994532, 2994700], [2997076, 2997303]]
ENST00000461997	[[2986364, 2986448], [2994448, 2994658], [2997076, 2998437]]	[[2994532, 2994658], [2997076, 2997625]]
ENST00000464682	[[2986373, 2986448], [2997076, 2998606]]	None
ENST00000489288	[[2986380, 2986448], [2994448, 2994700], [2997076, 2998626]]	[[2994532, 2994700], [2997076, 2997625]]
ENST00000366285	[[2986388, 2986448], [2987098, 2987279], [2994448, 2994700], [2997076, 2997100]]	[[2994532, 2994700], [2997076, 2997100]]
ENST00000535978	[[2986388, 2986448], [2994448, 2994700], [2996143, 2996277], [2997076, 2997173]]	[[2994532, 2994700], [2996143, 2996155]]
ENST00000538700	[[2986388, 2986448], [2994327, 2994700], [2997076, 2997223]]	[[2994532, 2994700], [2997076, 2997223]]
NR_046433	[[2985423, 2985681], [2997076, 2998691]]	None
NR_027365	[[2986364, 2986448], [2997076, 2998691]]	None
NM_001252500	[[2986364, 2986448], [2994448, 2994658], [2997076, 2998691]]	[[2994532, 2994658], [2997076, 2997625]]
NM_001252499	[[2986364, 2986448], [2994448, 2994700], [2997076, 2998691]]	[[2994532, 2994700], [2997076, 2997625]]
NR_046432	[[2986364, 2986448], [2994448, 2994700], [2996143, 2996277], [2997076, 2998691]]	None
NM_001257098	[[2986364, 2986448], [2994428, 2994700], [2997076, 2998691]]	[[2994532, 2994700], [2997076, 2997625]]
NM_001257097	[[2986364, 2986448], [2994327, 2994700], [2997076, 2998691]]	[[2994532, 2994700], [2997076, 2997625]]

Promoter

Chrom	Start	End	Description
chr12	2986359	2986421	CAGE_peak_1_at_C12orf32_5end,CAGE_peak_1_at_TULP3_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr12	GH12I002980	2980889	2983744	0.66	[{'connected_gene': 'NRIP2', 'score': 10.46}, {'connected_gene': 'FOXM1', 'score': 10.07}, {'connected_gene': 'RHNO1', 'score': 10.07}, {'connected_gene': 'TULP3', 'score': 10.07}, {'connected_gene': 'ITFG2', 'score': 10.03}, {'connected_gene': 'ENSG00000250899', 'score': 7.41}, {'connected_gene': 'TEAD4', 'score': 6.99}, {'connected_gene': 'GC12P002971', 'score': 0.39}, {'connected_gene': 'GC12M003040', 'score': 0.22}]
chr12	GH12I002979	2979562	2980363	0.2	[{'connected_gene': 'NRIP2', 'score': 10.46}, {'connected_gene': 'FOXM1', 'score': 9.75}, {'connected_gene': 'RHNO1', 'score': 9.75}, {'connected_gene': 'TULP3', 'score': 9.75}, {'connected_gene': 'ITFG2', 'score': 9.17}, {'connected_gene': 'TEAD4', 'score': 6.78}, {'connected_gene': 'ENSG00000250899', 'score': 6.67}, {'connected_gene': 'GC12P002971', 'score': 0.39}, {'connected_gene': 'GC12M003040', 'score': 0.21}]
chr12	GH12I002854	2854577	2855746	0.43	[{'connected_gene': 'RHNO1', 'score': 9.32}, {'connected_gene': 'TEX52', 'score': 0.77}, {'connected_gene': 'GC12P002844', 'score': 0.39}, {'connected_gene': 'ITFG2', 'score': 0.26}]
chr12	GH12I002889	2889587	2893744	2.25	[{'connected_gene': 'TULP3', 'score': 588.96}, {'connected_gene': 'RHNO1', 'score': 23.55}, {'connected_gene': 'NRIP2', 'score': 11.93}, {'connected_gene': 'ITFG2', 'score': 10.77}, {'connected_gene': 'DCP1B', 'score': 10.73}, {'connected_gene': 'PIR60635', 'score': 0.77}, {'connected_gene': 'GC12M002940', 'score': 0.25}]
chr12	GH12I002962	2962467	2965305	1.27	[{'connected_gene': 'TULP3', 'score': 6.31}, {'connected_gene': 'RHNO1', 'score': 5.27}, {'connected_gene': 'TEAD4', 'score': 0.77}, {'connected_gene': 'GC12P002971', 'score': 0.44}]
chr12	GH12I002876	2876014	2879331	2.03	[{'connected_gene': 'TULP3', 'score': 591.91}, {'connected_gene': 'RHNO1', 'score': 574.57}, {'connected_gene': 'FOXM1', 'score': 550.77}, {'connected_gene': 'ITFG2', 'score': 64.04}, {'connected_gene': 'DCP1B', 'score': 29.18}, {'connected_gene': 'CBX3P4', 'score': 28.2}, {'connected_gene': 'ITFG2-AS1', 'score': 13.03}, {'connected_gene': 'NRIP2', 'score': 10.72}, {'connected_gene': 'RPS27P3', 'score': 10.71}, {'connected_gene': 'IQSEC3P1', 'score': 10.6}, {'connected_gene': 'FKBP4', 'score': 10.03}, {'connected_gene': 'GC12M002869', 'score': 0.77}]
chr12	GH12I002990	2990299	2993855	0.31	[{'connected_gene': 'TEAD4', 'score': 12.02}, {'connected_gene': 'RNU6-1315P', 'score': 12.0}, {'connected_gene': 'NRIP2', 'score': 10.95}, {'connected_gene': 'TSPAN9', 'score': 10.41}, {'connected_gene': 'TULP3', 'score': 10.04}, {'connected_gene': 'FOXM1', 'score': 10.04}, {'connected_gene': 'RHNO1', 'score': 10.03}, {'connected_gene': 'ITFG2', 'score': 9.72}, {'connected_gene': 'GC12P002971', 'score': 0.34}, {'connected_gene': 'GC12M003040', 'score': 0.25}]
chr12	GH12I002824	2824695	2827253	0.38	[{'connected_gene': 'FKBP4', 'score': 11.45}, {'connected_gene': 'CBX3P4', 'score': 11.21}, {'connected_gene': 'FOXM1', 'score': 10.79}, {'connected_gene': 'RHNO1', 'score': 10.79}, {'connected_gene': 'TULP3', 'score': 10.79}, {'connected_gene': 'NRIP2', 'score': 6.37}, {'connected_gene': 'ENSG00000256150', 'score': 0.39}, {'connected_gene': 'ITFG2', 'score': 0.39}]
chr12	GH12I002868	2868052	2868204	0.38	[{'connected_gene': 'FOXM1', 'score': 0.44}, {'connected_gene': 'RHNO1', 'score': 0.44}, {'connected_gene': 'TEX52', 'score': 0.39}]
chr12	GH12I003030	3030333	3034844	1.08	[{'connected_gene': 'TSPAN9', 'score': 11.5}, {'connected_gene': 'NRIP2', 'score': 11.34}, {'connected_gene': 'TULP3', 'score': 10.57}, {'connected_gene': 'FOXM1', 'score': 10.57}, {'connected_gene': 'RHNO1', 'score': 10.57}, {'connected_gene': 'ITFG2', 'score': 10.08}, {'connected_gene': 'FKBP4', 'score': 10.07}, {'connected_gene': 'GC12M003040', 'score': 0.44}, {'connected_gene': 'GC12P002971', 'score': 0.21}, {'connected_gene': 'TEAD4', 'score': 0.19}]
chr12	GH12I003054	3054802	3056651	0.56	[{'connected_gene': 'TSPAN9', 'score': 11.59}, {'connected_gene': 'NRIP2', 'score': 10.2}, {'connected_gene': 'FOXM1', 'score': 9.93}, {'connected_gene': 'RHNO1', 'score': 9.93}, {'connected_gene': 'TULP3', 'score': 9.93}, {'connected_gene': 'ITFG2', 'score': 9.42}, {'connected_gene': 'PIR51354', 'score': 0.39}, {'connected_gene': 'RPL13AP24', 'score': 0.37}]
chr12	GH12I003084	3084129	3087405	1.23	[{'connected_gene': 'TSPAN9', 'score': 23.94}, {'connected_gene': 'FOXM1', 'score': 9.42}, {'connected_gene': 'RHNO1', 'score': 9.42}, {'connected_gene': 'TULP3', 'score': 9.42}, {'connected_gene': 'PIR34599', 'score': 0.77}, {'connected_gene': 'GC12P003091', 'score': 0.77}]
chr12	GH12I003083	3083401	3084104	1.02	[{'connected_gene': 'TSPAN9', 'score': 23.99}, {'connected_gene': 'CBX3P4', 'score': 12.49}, {'connected_gene': 'FOXM1', 'score': 9.42}, {'connected_gene': 'RHNO1', 'score': 9.42}, {'connected_gene': 'TULP3', 'score': 9.42}, {'connected_gene': 'PIR34599', 'score': 0.44}, {'connected_gene': 'GC12P003091', 'score': 0.44}]
chr12	GH12I002856	2856724	2857422	0.46	[{'connected_gene': 'TEX52', 'score': 550.77}, {'connected_gene': 'RHNO1', 'score': 9.15}, {'connected_gene': 'GC12P002844', 'score': 0.39}, {'connected_gene': 'ITFG2', 'score': 0.26}]
chr12	GH12I002753	2753201	2753343	0.51	[{'connected_gene': 'IQSEC3P1', 'score': 555.53}, {'connected_gene': 'FKBP4', 'score': 10.33}, {'connected_gene': 'ITFG2', 'score': 10.3}, {'connected_gene': 'NRIP2', 'score': 9.86}, {'connected_gene': 'FOXM1', 'score': 8.97}, {'connected_gene': 'RHNO1', 'score': 8.97}, {'connected_gene': 'TULP3', 'score': 8.97}, {'connected_gene': 'ITFG2-AS1', 'score': 0.37}, {'connected_gene': 'ENSG00000256150', 'score': 0.22}]
chr12	GH12I002752	2752715	2752904	1	[{'connected_gene': 'IQSEC3P1', 'score': 550.77}, {'connected_gene': 'FKBP4', 'score': 10.33}, {'connected_gene': 'ITFG2', 'score': 10.3}, {'connected_gene': 'NRIP2', 'score': 9.86}, {'connected_gene': 'FOXM1', 'score': 8.97}, {'connected_gene': 'RHNO1', 'score': 8.97}, {'connected_gene': 'TULP3', 'score': 8.97}, {'connected_gene': 'LOC100422463', 'score': 0.39}, {'connected_gene': 'ENSG00000256150', 'score': 0.21}]
chr12	GH12I002885	2885158	2885984	0.8	[{'connected_gene': 'ENSG00000278356', 'score': 550.77}, {'connected_gene': 'RHNO1', 'score': 24.01}, {'connected_gene': 'NRIP2', 'score': 10.69}, {'connected_gene': 'ITFG2', 'score': 10.23}, {'connected_gene': 'FKBP4', 'score': 10.01}, {'connected_gene': 'GC12P002880', 'score': 0.77}, {'connected_gene': 'TULP3', 'score': 0.44}]
chr12	GH12I003088	3088102	3089173	0.38	[{'connected_gene': 'PIR34599', 'score': 550.77}, {'connected_gene': 'GC12P003091', 'score': 550.77}, {'connected_gene': 'TSPAN9', 'score': 20.63}, {'connected_gene': 'FOXM1', 'score': 9.41}, {'connected_gene': 'RHNO1', 'score': 9.41}, {'connected_gene': 'TULP3', 'score': 9.41}]