PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000302424	[[104404252, 104404944], [104414409, 104414505], [104414836, 104415070], [104415862, 104415894], [104416026, 104416142], [104416503, 104418164]]	[[104404374, 104404944], [104414409, 104414505], [104414836, 104415070], [104415862, 104415894], [104416026, 104416142], [104416503, 104417111]]
ENST00000462202	[[104404643, 104404944], [104414836, 104415070], [104415862, 104415894], [104416026, 104416142], [104416503, 104416711]]	[[104404643, 104404944], [104414836, 104415070], [104415862, 104415894], [104416026, 104416142], [104416503, 104416711]]
ENST00000487927	[[104408975, 104409035], [104414409, 104414505], [104414836, 104415070], [104415862, 104415894], [104416026, 104416142], [104416503, 104416726]]	None
ENST00000479004	[[104415037, 104415070], [104415862, 104415894], [104416001, 104416142], [104416503, 104416844]]	None
NM_001345950	[[104404251, 104404944], [104414836, 104415070], [104415862, 104415894], [104416026, 104416142], [104416503, 104418076]]	[[104404374, 104404944], [104414836, 104415070], [104415862, 104415894], [104416026, 104416142], [104416503, 104417111]]
NM_030912	[[104404251, 104404944], [104414409, 104414505], [104414836, 104415070], [104415862, 104415894], [104416026, 104416142], [104416503, 104418076]]	[[104404374, 104404944], [104414409, 104414505], [104414836, 104415070], [104415862, 104415894], [104416026, 104416142], [104416503, 104417111]]
NR_144321	[[104404251, 104404944], [104414409, 104414505], [104414836, 104415070], [104415862, 104415894], [104416001, 104416142], [104416503, 104418076]]	None

Promoter

Chrom	Start	End	Description
chr10	104403921	104403965	CAGE_peak_4_at_TRIM8_5end
chr10	104404124	104404137	CAGE_peak_26_at_TRIM8_5end
chr10	104404218	104404252	CAGE_peak_1_at_TRIM8_5end
chr10	104404712	104404726	CAGE_peak_8_at_TRIM8_5end
chr10	104404775	104404890	CAGE_peak_2_at_TRIM8_5end
chr10	104408911	104408922	CAGE_peak_33_at_TRIM8_5end
chr10	104417158	104417232	CAGE_peak_3_at_TRIM8_5end
chr10	104417630	104417634	CAGE_peak_24_at_TRIM8_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr10	GH10I102641	102641374	102654052	2.57	[{'connected_gene': 'TRIM8', 'score': 558.94}, {'connected_gene': 'SFXN2', 'score': 36.78}, {'connected_gene': 'MFSD13A', 'score': 26.57}, {'connected_gene': 'RPEL1', 'score': 20.57}, {'connected_gene': 'PDCD11', 'score': 17.56}, {'connected_gene': 'AS3MT', 'score': 17.05}, {'connected_gene': 'PPRC1', 'score': 13.79}, {'connected_gene': 'TAF5', 'score': 13.74}, {'connected_gene': 'LDB1', 'score': 11.83}, {'connected_gene': 'ARL3', 'score': 11.44}, {'connected_gene': 'SUFU', 'score': 11.22}, {'connected_gene': 'GBF1', 'score': 11.11}, {'connected_gene': 'HPS6', 'score': 10.67}, {'connected_gene': 'NOLC1', 'score': 10.6}, {'connected_gene': 'C10orf76', 'score': 5.29}, {'connected_gene': 'NFKB2', 'score': 2.63}, {'connected_gene': 'WBP1L', 'score': 1.37}, {'connected_gene': 'ENSG00000272933', 'score': 0.77}, {'connected_gene': 'LOC105378460', 'score': 0.44}, {'connected_gene': 'GC10M102383', 'score': 0.25}, {'connected_gene': 'GC10M102382', 'score': 0.25}]
chr10	GH10I102610	102610527	102614342	1.32	[{'connected_gene': 'MFSD13A', 'score': 30.35}, {'connected_gene': 'LDB1', 'score': 5.52}, {'connected_gene': 'TRIM8', 'score': 2.75}, {'connected_gene': 'NFKB2', 'score': 1.9}, {'connected_gene': 'RNU6-43P', 'score': 0.34}, {'connected_gene': 'GC10M102383', 'score': 0.18}, {'connected_gene': 'GC10M102382', 'score': 0.18}, {'connected_gene': 'SUFU', 'score': 0.14}]
chr10	GH10I102618	102618726	102622482	1.02	[{'connected_gene': 'MFSD13A', 'score': 30.5}, {'connected_gene': 'SFXN2', 'score': 5.71}, {'connected_gene': 'TRIM8', 'score': 0.34}, {'connected_gene': 'RNU6-43P', 'score': 0.31}, {'connected_gene': 'GC10M102383', 'score': 0.19}, {'connected_gene': 'GC10M102382', 'score': 0.19}, {'connected_gene': 'SUFU', 'score': 0.13}]
chr10	GH10I102617	102617827	102618613	0.31	[{'connected_gene': 'MFSD13A', 'score': 30.4}, {'connected_gene': 'SFXN2', 'score': 4.89}, {'connected_gene': 'TRIM8', 'score': 0.34}, {'connected_gene': 'RNU6-43P', 'score': 0.31}, {'connected_gene': 'GC10M102383', 'score': 0.18}, {'connected_gene': 'GC10M102382', 'score': 0.18}, {'connected_gene': 'SUFU', 'score': 0.13}]
chr10	GH10I102625	102625402	102636039	1.59	[{'connected_gene': 'MFSD13A', 'score': 29.82}, {'connected_gene': 'SFXN2', 'score': 8.85}, {'connected_gene': 'ACTR1A', 'score': 5.31}, {'connected_gene': 'CUEDC2', 'score': 4.86}, {'connected_gene': 'GBF1', 'score': 1.58}, {'connected_gene': 'TRIM8', 'score': 0.39}, {'connected_gene': 'RNU6-43P', 'score': 0.28}, {'connected_gene': 'GC10M102383', 'score': 0.21}, {'connected_gene': 'GC10M102382', 'score': 0.21}, {'connected_gene': 'SUFU', 'score': 0.13}]
chr10	GH10I102595	102595093	102606248	1.65	[{'connected_gene': 'MFSD13A', 'score': 41.23}, {'connected_gene': 'SFXN2', 'score': 17.2}, {'connected_gene': 'ACTR1A', 'score': 12.81}, {'connected_gene': 'SUFU', 'score': 11.52}, {'connected_gene': 'C10orf95', 'score': 10.62}, {'connected_gene': 'PSD', 'score': 10.53}, {'connected_gene': 'FBXL15', 'score': 10.52}, {'connected_gene': 'CUEDC2', 'score': 10.52}, {'connected_gene': 'MIR146B', 'score': 10.51}, {'connected_gene': 'ARL3', 'score': 10.49}, {'connected_gene': 'WBP1L', 'score': 1.53}, {'connected_gene': 'RNU6-43P', 'score': 0.44}, {'connected_gene': 'TRIM8', 'score': 0.26}, {'connected_gene': 'GC10M102383', 'score': 0.16}, {'connected_gene': 'GC10M102382', 'score': 0.16}]
chr10	GH10I102594	102594580	102594744	0.4	[{'connected_gene': 'MFSD13A', 'score': 29.98}, {'connected_gene': 'RNU6-43P', 'score': 0.77}, {'connected_gene': 'TRIM8', 'score': 0.25}, {'connected_gene': 'SUFU', 'score': 0.16}, {'connected_gene': 'GC10M102383', 'score': 0.15}, {'connected_gene': 'GC10M102382', 'score': 0.15}]
chr10	GH10I102615	102615201	102616978	0.88	[{'connected_gene': 'MFSD13A', 'score': 29.95}, {'connected_gene': 'RNU6-43P', 'score': 0.34}, {'connected_gene': 'TRIM8', 'score': 0.31}, {'connected_gene': 'GC10M102383', 'score': 0.18}, {'connected_gene': 'GC10M102382', 'score': 0.18}, {'connected_gene': 'SUFU', 'score': 0.14}]
chr10	GH10I102808	102808015	102809242	0.46	[{'connected_gene': 'AS3MT', 'score': 8.62}, {'connected_gene': 'BORCS7', 'score': 6.93}, {'connected_gene': 'TRIM8', 'score': 4.4}, {'connected_gene': 'RNU6-1231P', 'score': 0.77}, {'connected_gene': 'CYP17A1-AS1', 'score': 0.34}, {'connected_gene': 'WBP1L', 'score': 0.2}]
chr10	GH10I102656	102656915	102659725	0.94	[{'connected_gene': 'SFXN2', 'score': 24.95}, {'connected_gene': 'ARL3', 'score': 22.4}, {'connected_gene': 'MFSD13A', 'score': 10.52}, {'connected_gene': 'RNU11-3P', 'score': 9.41}, {'connected_gene': 'RPARP-AS1', 'score': 5.89}, {'connected_gene': 'LOC105378460', 'score': 0.77}, {'connected_gene': 'TRIM8', 'score': 0.37}, {'connected_gene': 'GC10M102383', 'score': 0.28}, {'connected_gene': 'GC10M102382', 'score': 0.28}]
chr10	GH10I102592	102592458	102594200	0.76	[{'connected_gene': 'RNU6-43P', 'score': 550.77}, {'connected_gene': 'GC10P102592', 'score': 550.77}, {'connected_gene': 'TRIM8', 'score': 0.25}, {'connected_gene': 'SUFU', 'score': 0.16}, {'connected_gene': 'GC10M102383', 'score': 0.15}, {'connected_gene': 'GC10M102382', 'score': 0.15}]
chr10	GH10I102655	102655997	102656519	0.2	[{'connected_gene': 'LOC105378460', 'score': 550.77}, {'connected_gene': 'SFXN2', 'score': 11.1}, {'connected_gene': 'TRIM8', 'score': 0.39}, {'connected_gene': 'GC10M102383', 'score': 0.28}, {'connected_gene': 'GC10M102382', 'score': 0.28}]
chr10	GH10I102654	102654284	102655646	0.2	[{'connected_gene': 'LOC105378460', 'score': 550.77}, {'connected_gene': 'SFXN2', 'score': 11.16}, {'connected_gene': 'MFSD13A', 'score': 7.91}, {'connected_gene': 'TRIM8', 'score': 0.39}, {'connected_gene': 'ENSG00000272933', 'score': 0.39}, {'connected_gene': 'GC10M102383', 'score': 0.28}, {'connected_gene': 'GC10M102382', 'score': 0.28}]