PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000493030	[[228581373, 228582953], [228584647, 228584748], [228584843, 228584866], [228588664, 228588895], [228589766, 228593605]]	[[228582405, 228582953], [228584647, 228584748], [228584843, 228584866], [228588664, 228588895], [228589766, 228589895]]
ENST00000284551	[[228581376, 228582953], [228584647, 228584748], [228584843, 228584866], [228588664, 228588895], [228589766, 228589862], [228593854, 228594541]]	[[228582405, 228582953], [228584647, 228584748], [228584843, 228584866], [228588664, 228588895], [228589766, 228589862], [228593854, 228594262]]
ENST00000460651	[[228582156, 228582953], [228584647, 228584748], [228588639, 228588892], [228589762, 228589799]]	None
ENST00000602582	[[228582525, 228582953], [228584647, 228584748], [228584843, 228584866], [228589766, 228589862], [228593854, 228593888]]	[[228582525, 228582953], [228584647, 228584748], [228584843, 228584866], [228589766, 228589862], [228593854, 228593888]]
ENST00000366699	[[228583234, 228584748], [228584843, 228584866], [228588664, 228588895], [228589766, 228589862], [228593854, 228594501]]	[[228584348, 228584748], [228584843, 228584866], [228588664, 228588895], [228589766, 228589862], [228593854, 228594262]]
ENST00000602308	[[228584313, 228584866], [228593854, 228593887]]	[[228584734, 228584866], [228593854, 228593887]]
ENST00000475775	[[228582908, 228582953], [228584647, 228584748], [228584843, 228585390]]	None
NM_145214	[[228581376, 228582953], [228584647, 228584748], [228584843, 228584866], [228588664, 228588895], [228589766, 228589862], [228593854, 228594517]]	[[228582405, 228582953], [228584647, 228584748], [228584843, 228584866], [228588664, 228588895], [228589766, 228589862], [228593854, 228594262]]

Promoter

Chrom	Start	End	Description
chr1	228594469	228594488	CAGE_peak_2_at_TRIM11_5end
chr1	228594490	228594561	CAGE_peak_1_at_TRIM11_5end
chr1	228594706	228594725	CAGE_peak_4_at_TRIM11_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I228511	228511900	228512042	0.2	[{'connected_gene': 'HIST3H2A', 'score': 11.58}, {'connected_gene': 'HIST3H2BB', 'score': 11.58}, {'connected_gene': 'RPL23AP15', 'score': 11.56}, {'connected_gene': 'ENSG00000231563', 'score': 10.88}, {'connected_gene': 'TRIM11', 'score': 10.87}, {'connected_gene': 'BTNL10', 'score': 0.77}, {'connected_gene': 'LOC105373124', 'score': 0.77}]
chr1	GH01I228510	228510433	228510556	0.31	[{'connected_gene': 'HIST3H2A', 'score': 11.58}, {'connected_gene': 'HIST3H2BB', 'score': 11.58}, {'connected_gene': 'RPL23AP15', 'score': 11.56}, {'connected_gene': 'ENSG00000231563', 'score': 10.88}, {'connected_gene': 'TRIM11', 'score': 10.88}, {'connected_gene': 'BTNL10', 'score': 0.77}, {'connected_gene': 'LOC105373124', 'score': 0.77}]
chr1	GH01I228226	228226633	228229806	1.08	[{'connected_gene': 'OBSCN', 'score': 58.64}, {'connected_gene': 'ENSG00000231563', 'score': 10.81}, {'connected_gene': 'TRIM11', 'score': 10.81}, {'connected_gene': 'GC01P228217', 'score': 0.39}, {'connected_gene': 'ENSG00000269890', 'score': 0.25}]
chr1	GH01I228282	228282460	228282609	0.46	[{'connected_gene': 'OBSCN', 'score': 30.97}, {'connected_gene': 'ENSG00000231563', 'score': 11.24}, {'connected_gene': 'TRIM11', 'score': 11.24}, {'connected_gene': 'ENSG00000269934', 'score': 0.44}, {'connected_gene': 'GC01P228299', 'score': 0.37}]
chr1	GH01I228373	228373992	228376074	1.06	[{'connected_gene': 'TRIM11', 'score': 16.26}, {'connected_gene': 'OBSCN', 'score': 15.17}, {'connected_gene': 'ENSG00000231563', 'score': 11.98}, {'connected_gene': 'RPL23AP15', 'score': 11.24}, {'connected_gene': 'HIST3H2A', 'score': 11.22}, {'connected_gene': 'HIST3H2BB', 'score': 11.22}, {'connected_gene': 'OBSCN-AS1', 'score': 10.73}, {'connected_gene': 'LOC101927401', 'score': 0.44}, {'connected_gene': 'ENSG00000270104', 'score': 0.44}]
chr1	GH01I228445	228445521	228446654	1.17	[{'connected_gene': 'TRIM17', 'score': 16.97}, {'connected_gene': 'OBSCN', 'score': 16.3}, {'connected_gene': 'TRIM11', 'score': 13.15}, {'connected_gene': 'ENSG00000231563', 'score': 11.92}, {'connected_gene': 'OBSCN-AS1', 'score': 10.39}, {'connected_gene': 'WNT3A', 'score': 9.99}, {'connected_gene': 'GJC2', 'score': 4.48}, {'connected_gene': 'HIST3H2A', 'score': 2.15}, {'connected_gene': 'RPL23AP15', 'score': 0.77}, {'connected_gene': 'HIST3H3', 'score': 0.34}]
chr1	GH01I228646	228646000	228649442	2.09	[{'connected_gene': 'LOC105373132', 'score': 550.77}, {'connected_gene': 'RNA5SP18', 'score': 550.77}, {'connected_gene': 'GC01M228712', 'score': 550.77}, {'connected_gene': 'RNA5S17', 'score': 550.77}, {'connected_gene': 'CICP26', 'score': 15.16}, {'connected_gene': 'HMGN2P19', 'score': 12.25}, {'connected_gene': 'C1orf35', 'score': 12.2}, {'connected_gene': 'LOC105373159', 'score': 11.88}, {'connected_gene': 'ENSG00000269890', 'score': 11.85}, {'connected_gene': 'NUP133', 'score': 11.06}, {'connected_gene': 'RHOU', 'score': 11.0}, {'connected_gene': 'HIST3H3', 'score': 10.82}, {'connected_gene': 'TAF5L', 'score': 9.94}, {'connected_gene': 'DUSP5P1', 'score': 5.57}, {'connected_gene': 'ENSG00000270110', 'score': 5.02}, {'connected_gene': 'RNF187', 'score': 4.36}, {'connected_gene': 'HIST3H2A', 'score': 1.44}, {'connected_gene': 'TRIM11', 'score': 1.41}]
chr1	GH01I228512	228512064	228512273	0.2	[{'connected_gene': 'BTNL10', 'score': 550.77}, {'connected_gene': 'HIST3H2A', 'score': 11.58}, {'connected_gene': 'HIST3H2BB', 'score': 11.58}, {'connected_gene': 'RPL23AP15', 'score': 11.56}, {'connected_gene': 'ENSG00000231563', 'score': 10.88}, {'connected_gene': 'TRIM11', 'score': 10.87}, {'connected_gene': 'LOC105373124', 'score': 0.77}]
chr1	GH01I228275	228275040	228277082	1.36	[{'connected_gene': 'ENSG00000269934', 'score': 561.3}, {'connected_gene': 'ENSG00000269890', 'score': 560.79}, {'connected_gene': 'OBSCN', 'score': 23.95}, {'connected_gene': 'CICP26', 'score': 12.91}, {'connected_gene': 'OBSCN-AS1', 'score': 11.71}, {'connected_gene': 'ENSG00000231563', 'score': 11.23}, {'connected_gene': 'TRIM11', 'score': 11.23}, {'connected_gene': 'RPL23AP15', 'score': 10.39}, {'connected_gene': 'HIST3H2A', 'score': 10.39}, {'connected_gene': 'HIST3H2BB', 'score': 10.39}, {'connected_gene': 'ENSG00000270110', 'score': 4.97}]
chr1	GH01I228403	228403895	228408562	2.03	[{'connected_gene': 'ENSG00000231563', 'score': 550.77}, {'connected_gene': 'TRIM11', 'score': 550.77}, {'connected_gene': 'GC01M228396', 'score': 550.77}, {'connected_gene': 'CICP26', 'score': 18.08}, {'connected_gene': 'ZNF678', 'score': 12.48}, {'connected_gene': 'HIST3H3', 'score': 10.87}, {'connected_gene': 'C1orf35', 'score': 10.54}, {'connected_gene': 'MRPL55', 'score': 10.43}, {'connected_gene': 'ENSG00000269890', 'score': 10.42}, {'connected_gene': 'WNT3A', 'score': 4.47}, {'connected_gene': 'PIR32292', 'score': 0.77}, {'connected_gene': 'GC01M228403', 'score': 0.77}, {'connected_gene': 'TRIM17', 'score': 0.39}]
chr1	GH01I228377	228377791	228379612	1.35	[{'connected_gene': 'ENSG00000231563', 'score': 12.0}, {'connected_gene': 'TRIM11', 'score': 12.0}, {'connected_gene': 'RPL23AP15', 'score': 11.24}, {'connected_gene': 'HIST3H2A', 'score': 11.23}, {'connected_gene': 'HIST3H2BB', 'score': 11.23}, {'connected_gene': 'OBSCN-AS1', 'score': 10.73}, {'connected_gene': 'OBSCN', 'score': 10.72}, {'connected_gene': 'ENSG00000270104', 'score': 0.44}, {'connected_gene': 'LOC101927401', 'score': 0.39}]
chr1	GH01I228393	228392900	228394772	0.63	[{'connected_gene': 'ENSG00000270094', 'score': 550.77}, {'connected_gene': 'RPL23AP15', 'score': 11.58}, {'connected_gene': 'HIST3H2A', 'score': 11.57}, {'connected_gene': 'HIST3H2BB', 'score': 11.57}, {'connected_gene': 'HIST3H3', 'score': 11.34}, {'connected_gene': 'OBSCN-AS1', 'score': 10.61}, {'connected_gene': 'OBSCN', 'score': 10.6}, {'connected_gene': 'TRIM17', 'score': 5.71}, {'connected_gene': 'ENSG00000270104', 'score': 0.44}, {'connected_gene': 'TRIM11', 'score': 0.39}]
chr1	GH01I228463	228463476	228465899	1.92	[{'connected_gene': 'GC01P228464', 'score': 550.77}, {'connected_gene': 'HIST3H2BA', 'score': 550.77}, {'connected_gene': 'ENSG00000231563', 'score': 10.46}, {'connected_gene': 'TRIM11', 'score': 10.46}, {'connected_gene': 'OBSCN', 'score': 10.08}, {'connected_gene': 'HIST3H2BB', 'score': 3.99}, {'connected_gene': 'HIST3H2A', 'score': 3.64}, {'connected_gene': 'RNF187', 'score': 0.34}]