PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000196169	[[60970590, 60971144], [61013821, 61013906], [61018820, 61018882], [61034513, 61034674], [61041371, 61041513], [61057908, 61057980], [61059932, 61060082], [61068568, 61068709], [61083896, 61084053], [61084763, 61084889], [61102500, 61103351], [61109241, 61109367], [61141658, 61141784], [61147746, 61148012]]	[[61034600, 61034674], [61041371, 61041513], [61057908, 61057980], [61059932, 61060082], [61068568, 61068709], [61083896, 61084053], [61084763, 61084889], [61102500, 61103351], [61109241, 61109367], [61141658, 61141775]]
ENST00000484389	[[60971072, 60971144], [61013821, 61013906], [61034513, 61034674], [61041371, 61041513], [61057908, 61057980], [61058826, 61058891], [61059932, 61060082], [61068568, 61068709], [61083675, 61084053], [61084763, 61084889], [61102500, 61102971]]	[[61034600, 61034674], [61041371, 61041513], [61057908, 61057980], [61058826, 61058889]]
ENST00000377894	[[60971121, 60971144], [61013821, 61013906], [61018820, 61018882], [61034513, 61034674], [61041371, 61041513], [61057908, 61057980], [61059932, 61060082], [61068568, 61068709], [61083896, 61084053], [61084763, 61084889], [61102500, 61103351], [61109241, 61109367], [61141658, 61141784], [61147749, 61148011]]	[[61034600, 61034674], [61041371, 61041513], [61057908, 61057980], [61059932, 61060082], [61068568, 61068709], [61083896, 61084053], [61084763, 61084889], [61102500, 61103351], [61109241, 61109367], [61141658, 61141775]]
ENST00000535286	[[60971426, 60971539], [61013821, 61013906], [61018816, 61018882], [61034513, 61034674], [61041371, 61041513], [61057908, 61057980], [61059932, 61060082], [61068568, 61068709], [61083896, 61084053], [61084763, 61084889], [61102500, 61103351], [61109241, 61109367], [61141658, 61141784], [61147749, 61148012]]	[[60971498, 60971539], [61013821, 61013906], [61018816, 61018882], [61034513, 61034674], [61041371, 61041513], [61057908, 61057980], [61059932, 61060082], [61068568, 61068709], [61083896, 61084053], [61084763, 61084889], [61102500, 61103351], [61109241, 61109367], [61141658, 61141775]]
ENST00000377881	[[60971467, 60971539], [61013821, 61013906], [61018816, 61018882], [61034513, 61034674], [61041371, 61041513], [61057908, 61057980], [61059932, 61060082], [61068568, 61068709], [61083896, 61084053], [61084763, 61084889], [61102500, 61103351], [61109241, 61109367], [61141658, 61141784], [61147749, 61148006]]	[[61034600, 61034674], [61041371, 61041513], [61057908, 61057980], [61059932, 61060082], [61068568, 61068709], [61083896, 61084053], [61084763, 61084889], [61102500, 61103351], [61109241, 61109367], [61141658, 61141775]]
ENST00000377882	[[61008182, 61008219], [61013821, 61013906], [61018820, 61018882], [61034513, 61034674], [61041371, 61041513], [61057908, 61057980], [61059932, 61060033]]	[[61034600, 61034674], [61041371, 61041513], [61057908, 61057980], [61059932, 61060033]]
ENST00000463109	[[61018820, 61018882], [61034513, 61035134]]	None
ENST00000471710	[[61103096, 61103351], [61109241, 61109560]]	None
NM_030794	[[60970590, 60971144], [61013821, 61013906], [61018820, 61018882], [61034513, 61034674], [61041371, 61041513], [61057908, 61057980], [61059932, 61060082], [61068568, 61068709], [61083896, 61084053], [61084763, 61084889], [61102500, 61103351], [61109241, 61109367], [61141658, 61141784], [61147749, 61148013]]	[[61034600, 61034674], [61041371, 61041513], [61057908, 61057980], [61059932, 61060082], [61068568, 61068709], [61083896, 61084053], [61084763, 61084889], [61102500, 61103351], [61109241, 61109367], [61141658, 61141775]]
NM_001146071	[[60970590, 60971144], [61013821, 61013906], [61018820, 61018882], [61034513, 61034674], [61041371, 61041513], [61057908, 61057980], [61059932, 61060082], [61068568, 61068709], [61083896, 61084053], [61084763, 61084889], [61102500, 61103351], [61109241, 61109367], [61141658, 61141784], [61147746, 61148013]]	[[61034600, 61034674], [61041371, 61041513], [61057908, 61057980], [61059932, 61060082], [61068568, 61068709], [61083896, 61084053], [61084763, 61084889], [61102500, 61103351], [61109241, 61109367], [61141658, 61141775]]
NM_001146070	[[60971426, 60971539], [61013821, 61013906], [61018816, 61018882], [61034513, 61034674], [61041371, 61041513], [61057908, 61057980], [61059932, 61060082], [61068568, 61068709], [61083896, 61084053], [61084763, 61084889], [61102500, 61103351], [61109241, 61109367], [61141658, 61141784], [61147749, 61148013]]	[[60971498, 60971539], [61013821, 61013906], [61018816, 61018882], [61034513, 61034674], [61041371, 61041513], [61057908, 61057980], [61059932, 61060082], [61068568, 61068709], [61083896, 61084053], [61084763, 61084889], [61102500, 61103351], [61109241, 61109367], [61141658, 61141775]]

Promoter

Chrom	Start	End	Description
chr13	60971080	60971161	CAGE_peak_1_at_TDRD3_5end
chr13	60971200	60971215	CAGE_peak_5_at_TDRD3_5end
chr13	60971332	60971343	CAGE_peak_4_at_TDRD3_5end
chr13	60971348	60971372	CAGE_peak_2_at_TDRD3_5end
chr13	60971455	60971494	CAGE_peak_3_at_TDRD3_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr13	GH13I060351	60351709	60352408	0.2	[{'connected_gene': 'DIAPH3', 'score': 9.46}, {'connected_gene': 'GC13M060319', 'score': 0.37}, {'connected_gene': 'LOC105370228', 'score': 0.34}, {'connected_gene': 'TDRD3', 'score': 0.26}]
chr13	GH13I060352	60351447	60351596	0.31	[{'connected_gene': 'DIAPH3', 'score': 9.46}, {'connected_gene': 'GC13M060319', 'score': 0.37}, {'connected_gene': 'LOC105370228', 'score': 0.34}, {'connected_gene': 'TDRD3', 'score': 0.26}]
chr13	GH13I060161	60161365	60166382	2.23	[{'connected_gene': 'DIAPH3', 'score': 556.97}, {'connected_gene': 'LOC105370227', 'score': 550.77}, {'connected_gene': 'TDRD3', 'score': 13.24}, {'connected_gene': 'GC13M060165', 'score': 0.77}, {'connected_gene': 'DIAPH3-AS2', 'score': 0.37}]
chr13	GH13I060395	60395583	60399821	2.05	[{'connected_gene': 'TDRD3', 'score': 583.64}, {'connected_gene': 'DIAPH3', 'score': 10.33}, {'connected_gene': 'GC13M060411', 'score': 0.34}]
chr13	GH13I060591	60591487	60591616	0.52	[{'connected_gene': 'TDRD3', 'score': 9.37}, {'connected_gene': 'RNA5SP31', 'score': 0.34}, {'connected_gene': 'GC13P060445', 'score': 0.11}]
chr13	GH13I060571	60571752	60573388	0.96	[{'connected_gene': 'TDRD3', 'score': 12.28}, {'connected_gene': 'RNA5SP31', 'score': 0.26}, {'connected_gene': 'GC13P060445', 'score': 0.13}]
chr13	GH13I060582	60582721	60586530	1.04	[{'connected_gene': 'TDRD3', 'score': 24.07}, {'connected_gene': 'RNA5SP31', 'score': 0.31}, {'connected_gene': 'GC13P060445', 'score': 0.12}]
chr13	GH13I060426	60426887	60428146	0.52	[{'connected_gene': 'TDRD3', 'score': 32.79}, {'connected_gene': 'GC13M060411', 'score': 0.44}, {'connected_gene': 'GC13P060445', 'score': 0.37}]
chr13	GH13I060409	60409487	60410567	1.02	[{'connected_gene': 'TDRD3', 'score': 583.36}, {'connected_gene': 'GC13M060411', 'score': 0.44}]
chr13	GH13I060431	60431227	60431376	0.63	[{'connected_gene': 'GC13M060411', 'score': 0.39}, {'connected_gene': 'GC13P060445', 'score': 0.39}, {'connected_gene': 'TDRD3', 'score': 0.29}]