PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000555574	[[51706879, 51707162], [51710573, 51710694], [51712030, 51712569]]	None
ENST00000457354	[[51706885, 51707162], [51710573, 51710689], [51712030, 51712076], [51713809, 51713938], [51716043, 51716089], [51716185, 51716287], [51716410, 51716483], [51721058, 51722759]]	[[51707010, 51707162], [51710573, 51710689], [51712030, 51712076], [51713809, 51713938], [51716043, 51716089], [51716185, 51716287], [51716410, 51716483], [51721058, 51721237]]
ENST00000556683	[[51706967, 51707162], [51710573, 51710689], [51712030, 51712172], [51713809, 51713938], [51716043, 51716089], [51716185, 51716287], [51716410, 51716483], [51721058, 51722372]]	[[51707010, 51707162], [51710573, 51710689], [51712030, 51712080]]
NM_030755	[[51706885, 51707162], [51710573, 51710689], [51712030, 51712076], [51713809, 51713938], [51716043, 51716089], [51716185, 51716287], [51716410, 51716483], [51721058, 51724373]]	[[51707010, 51707162], [51710573, 51710689], [51712030, 51712076], [51713809, 51713938], [51716043, 51716089], [51716185, 51716287], [51716410, 51716483], [51721058, 51721237]]

Promoter

Chrom	Start	End	Description
chr14	51706923	51707006	CAGE_peak_1_at_TMX1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr14	GH14I051138	51138191	51140018	0.72	[{'connected_gene': 'TMX1', 'score': 17.07}, {'connected_gene': 'TRIM9', 'score': 9.36}]
chr14	GH14I051203	51203283	51203432	0.67	[{'connected_gene': 'TMX1', 'score': 18.5}, {'connected_gene': 'ENSG00000201376', 'score': 10.18}, {'connected_gene': 'TRIM9', 'score': 0.14}]
chr14	GH14I051239	51239401	51241828	1.99	[{'connected_gene': 'TMX1', 'score': 550.77}, {'connected_gene': 'ENSG00000270062', 'score': 10.3}, {'connected_gene': 'GC14P051245', 'score': 0.77}]
chr14	GH14I050665	50665200	50671073	2.24	[{'connected_gene': 'SAV1', 'score': 566.29}, {'connected_gene': 'TMX1', 'score': 13.27}, {'connected_gene': 'POLE2', 'score': 10.48}, {'connected_gene': 'VCPKMT', 'score': 10.47}, {'connected_gene': 'MAP4K5', 'score': 7.36}, {'connected_gene': 'CDKL1', 'score': 5.58}, {'connected_gene': 'GC14M050664', 'score': 0.77}, {'connected_gene': 'GC14P050662', 'score': 0.44}]
chr14	GH14I051581	51581012	51582549	1.29	[{'connected_gene': 'FRMD6', 'score': 16.61}, {'connected_gene': 'TMX1', 'score': 11.85}, {'connected_gene': 'RNU6-1291P', 'score': 10.51}, {'connected_gene': 'PTGER2', 'score': 10.38}, {'connected_gene': 'FRMD6-AS2', 'score': 0.37}]
chr14	GH14I051649	51649614	51656246	2.48	[{'connected_gene': 'FRMD6', 'score': 556.27}, {'connected_gene': 'FRMD6-AS1', 'score': 550.77}, {'connected_gene': 'TMX1', 'score': 11.38}, {'connected_gene': 'GNG2', 'score': 10.46}, {'connected_gene': 'RNU6-301P', 'score': 10.3}, {'connected_gene': 'RNA5SP385', 'score': 0.28}]
chr14	GH14I051104	51104563	51104652	0.31	[{'connected_gene': 'TRIM9', 'score': 0.44}, {'connected_gene': 'TMX1', 'score': 0.12}]
chr14	GH14I051131	51131643	51131792	0.2	[{'connected_gene': 'TRIM9', 'score': 9.46}, {'connected_gene': 'TMX1', 'score': 0.14}]
chr14	GH14I051167	51167745	51168501	0.31	[{'connected_gene': 'TRIM9', 'score': 8.53}, {'connected_gene': 'TMX1', 'score': 6.11}]
chr14	GH14I051979	51979203	51979352	0.88	[{'connected_gene': 'LOC105370500', 'score': 11.3}, {'connected_gene': 'FRMD6', 'score': 10.74}, {'connected_gene': 'PSMC6', 'score': 9.75}, {'connected_gene': 'TMX1', 'score': 9.67}, {'connected_gene': 'LOC105370497', 'score': 0.44}, {'connected_gene': 'ENSG00000259007', 'score': 0.44}, {'connected_gene': 'GNG2', 'score': 0.1}]
chr14	GH14I051980	51979001	51979201	0.86	[{'connected_gene': 'LOC105370500', 'score': 11.3}, {'connected_gene': 'FRMD6', 'score': 10.74}, {'connected_gene': 'PSMC6', 'score': 9.75}, {'connected_gene': 'TMX1', 'score': 9.67}, {'connected_gene': 'LOC105370497', 'score': 0.44}, {'connected_gene': 'ENSG00000259007', 'score': 0.44}, {'connected_gene': 'GNG2', 'score': 0.1}]
chr14	GH14I051304	51304080	51306457	0.69	[{'connected_gene': 'LOC105370495', 'score': 5.32}, {'connected_gene': 'TMX1', 'score': 4.82}, {'connected_gene': 'LINC00640', 'score': 4.58}, {'connected_gene': 'LINC00519', 'score': 0.34}, {'connected_gene': 'GC14P051278', 'score': 0.31}]
chr14	GH14I051283	51283403	51283864	0.63	[{'connected_gene': 'ENSG00000201376', 'score': 11.16}, {'connected_gene': 'TMX1', 'score': 9.61}, {'connected_gene': 'TRIM9', 'score': 4.51}, {'connected_gene': 'GC14P051278', 'score': 0.44}, {'connected_gene': 'LINC00519', 'score': 0.26}]
chr14	GH14I051065	51065874	51070444	0.76	[{'connected_gene': 'ENSG00000259055', 'score': 9.02}, {'connected_gene': 'TMX1', 'score': 4.28}, {'connected_gene': 'TRIM9', 'score': 0.31}, {'connected_gene': 'GC14P050964', 'score': 0.15}]
chr14	GH14I051028	51028079	51030410	0.31	[{'connected_gene': 'ENSG00000259055', 'score': 6.85}, {'connected_gene': 'TMX1', 'score': 4.99}, {'connected_gene': 'GC14P050964', 'score': 0.21}, {'connected_gene': 'TRIM9', 'score': 0.2}]
chr14	GH14I051242	51242903	51243052	0.2	[{'connected_gene': 'ENSG00000201376', 'score': 550.77}, {'connected_gene': 'GC14P051245', 'score': 550.77}, {'connected_gene': 'TMX1', 'score': 0.77}]
chr14	GH14I051243	51242550	51242843	0.43	[{'connected_gene': 'ENSG00000201376', 'score': 550.77}, {'connected_gene': 'GC14P051245', 'score': 550.77}, {'connected_gene': 'TMX1', 'score': 8.62}]
chr14	GH14I051292	51292220	51293890	0.4	[{'connected_gene': 'ENSG00000201376', 'score': 10.43}, {'connected_gene': 'RNU6-301P', 'score': 9.49}, {'connected_gene': 'LINC00519', 'score': 5.43}, {'connected_gene': 'TMX1', 'score': 5.29}, {'connected_gene': 'GC14P051278', 'score': 0.37}]