PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000519562	[[105351314, 105351693], [105352033, 105352090], [105360768, 105360902]]	None
ENST00000517364	[[105351761, 105352090], [105360768, 105361013]]	None
ENST00000518023	[[105352053, 105352090], [105352514, 105352668], [105360768, 105361159]]	None
ENST00000297581	[[105352053, 105352090], [105360768, 105361809], [105367104, 105367413], [105368351, 105368917]]	[[105360780, 105361809], [105367104, 105367413], [105368351, 105368426]]
ENST00000517991	[[105360768, 105361607], [105368351, 105368461]]	[[105360780, 105361607], [105368351, 105368376]]
ENST00000518051	[[105361664, 105361809], [105368351, 105368786]]	None
ENST00000520080	[[105367283, 105367413], [105368351, 105368917]]	None
NM_001257317	[[105352023, 105352090], [105360768, 105361607], [105368351, 105368917]]	[[105360780, 105361607], [105368351, 105368376]]
NM_030788	[[105352023, 105352090], [105360768, 105361809], [105367104, 105367413], [105368351, 105368917]]	[[105360780, 105361809], [105367104, 105367413], [105368351, 105368426]]

Promoter

Chrom	Start	End	Description
chr8	105351311	105351364	CAGE_peak_2_at_TM7SF4_5end
chr8	105352050	105352056	CAGE_peak_1_at_TM7SF4_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr8	GH08I104272	104272611	104273884	0.56	[{'connected_gene': 'RIMS2', 'score': 4.72}, {'connected_gene': 'PIR34879', 'score': 0.39}, {'connected_gene': 'DCSTAMP', 'score': 0.2}]
chr8	GH08I104283	104283602	104284660	0.2	[{'connected_gene': 'RIMS2', 'score': 4.07}, {'connected_gene': 'PIR34879', 'score': 0.34}, {'connected_gene': 'DCSTAMP', 'score': 0.23}]
chr8	GH08I104277	104277805	104279567	0.97	[{'connected_gene': 'RIMS2', 'score': 5.23}, {'connected_gene': 'LRP12', 'score': 1.28}, {'connected_gene': 'PIR34879', 'score': 0.37}, {'connected_gene': 'DCSTAMP', 'score': 0.21}]
chr8	GH08I104175	104175055	104176662	0.75	[{'connected_gene': 'DCSTAMP', 'score': 4.81}, {'connected_gene': 'RIMS2', 'score': 4.23}, {'connected_gene': 'LOC105375688', 'score': 0.21}, {'connected_gene': 'PIR34879', 'score': 0.18}]
chr8	GH08I104323	104323213	104324410	0.73	[{'connected_gene': 'DCSTAMP', 'score': 7.54}, {'connected_gene': 'RIMS2', 'score': 4.79}, {'connected_gene': 'PIR34879', 'score': 0.21}]
chr8	GH08I104746	104746198	104748243	1.17	[{'connected_gene': 'DCSTAMP', 'score': 4.58}, {'connected_gene': 'LRP12', 'score': 1.81}, {'connected_gene': 'GC08P104735', 'score': 0.39}, {'connected_gene': 'GC08M104805', 'score': 0.19}, {'connected_gene': 'ZFPM2', 'score': 0.1}]
chr8	GH08I104669	104669058	104669541	0.96	[{'connected_gene': 'DCSTAMP', 'score': 22.41}, {'connected_gene': 'LRP12', 'score': 13.42}, {'connected_gene': 'ENSG00000283157', 'score': 0.29}, {'connected_gene': 'GC08P104611', 'score': 0.22}, {'connected_gene': 'ZFPM2', 'score': 0.18}]
chr8	GH08I104664	104664453	104666983	1.74	[{'connected_gene': 'DCSTAMP', 'score': 14.86}, {'connected_gene': 'LRP12', 'score': 13.98}, {'connected_gene': 'ENSG00000283157', 'score': 0.28}, {'connected_gene': 'GC08P104611', 'score': 0.23}, {'connected_gene': 'ZFPM2', 'score': 0.19}]
chr8	GH08I104359	104359795	104362798	1.18	[{'connected_gene': 'DCSTAMP', 'score': 60.04}, {'connected_gene': 'LRP12', 'score': 1.54}, {'connected_gene': 'GC08M104420', 'score': 0.22}, {'connected_gene': 'DPYS', 'score': 0.14}]
chr8	GH08I104336	104336616	104337480	0.99	[{'connected_gene': 'DCSTAMP', 'score': 35.71}, {'connected_gene': 'LRP12', 'score': 1.75}, {'connected_gene': 'PIR34879', 'score': 0.18}, {'connected_gene': 'DPYS', 'score': 0.12}]
chr8	GH08I104585	104585660	104586562	1.13	[{'connected_gene': 'DCSTAMP', 'score': 12.5}, {'connected_gene': 'LRP12', 'score': 7.46}, {'connected_gene': 'GC08P104568', 'score': 0.34}]
chr8	GH08I104437	104437471	104437726	0.56	[{'connected_gene': 'DCSTAMP', 'score': 15.84}, {'connected_gene': 'DPYS', 'score': 10.29}, {'connected_gene': 'LOC105375692', 'score': 0.44}, {'connected_gene': 'LOC105375691', 'score': 0.31}]
chr8	GH08I104329	104329513	104331079	1.14	[{'connected_gene': 'DCSTAMP', 'score': 14.18}, {'connected_gene': 'PIR34879', 'score': 0.19}, {'connected_gene': 'DPYS', 'score': 0.12}]
chr8	GH08I104367	104367401	104367600	0.31	[{'connected_gene': 'DCSTAMP', 'score': 11.76}, {'connected_gene': 'GC08M104420', 'score': 0.23}, {'connected_gene': 'DPYS', 'score': 0.15}]
chr8	GH08I104347	104347533	104347682	0.2	[{'connected_gene': 'DCSTAMP', 'score': 0.44}, {'connected_gene': 'GC08M104420', 'score': 0.19}, {'connected_gene': 'DPYS', 'score': 0.13}]
chr8	GH08I104342	104342601	104343200	0.63	[{'connected_gene': 'DCSTAMP', 'score': 0.77}, {'connected_gene': 'GC08M104420', 'score': 0.18}, {'connected_gene': 'DPYS', 'score': 0.13}]
chr8	GH08I104417	104417038	104418429	0.97	[{'connected_gene': 'DCSTAMP', 'score': 20.35}, {'connected_gene': 'GC08M104420', 'score': 0.77}, {'connected_gene': 'DPYS', 'score': 0.25}]
chr8	GH08I104338	104338401	104339600	0.69	[{'connected_gene': 'DCSTAMP', 'score': 580.14}, {'connected_gene': 'PIR34879', 'score': 0.18}, {'connected_gene': 'DPYS', 'score': 0.13}]
chr8	GH08I104339	104339713	104339842	0.7	[{'connected_gene': 'DCSTAMP', 'score': 580.15}, {'connected_gene': 'GC08M104420', 'score': 0.18}, {'connected_gene': 'DPYS', 'score': 0.13}]
chr8	GH08I104325	104325533	104326334	0.94	[{'connected_gene': 'DCSTAMP', 'score': 5.52}, {'connected_gene': 'LOC105375690', 'score': 4.32}, {'connected_gene': 'RIMS2', 'score': 3.99}, {'connected_gene': 'PIR34879', 'score': 0.2}]
chr8	GH08I104659	104659593	104659742	0.51	[{'connected_gene': 'LRP12', 'score': 11.6}, {'connected_gene': 'DCSTAMP', 'score': 4.08}, {'connected_gene': 'ENSG00000283157', 'score': 0.26}, {'connected_gene': 'GC08P104611', 'score': 0.25}, {'connected_gene': 'ZFPM2', 'score': 0.2}]
chr8	GH08I104616	104616485	104618760	1.42	[{'connected_gene': 'LRP12', 'score': 14.13}, {'connected_gene': 'DCSTAMP', 'score': 6.51}, {'connected_gene': 'GC08P104611', 'score': 0.44}, {'connected_gene': 'ZFPM2', 'score': 0.31}, {'connected_gene': 'ENSG00000283157', 'score': 0.17}]
chr8	GH08I104642	104642442	104644392	1.3	[{'connected_gene': 'LRP12', 'score': 13.25}, {'connected_gene': 'DCSTAMP', 'score': 7.44}, {'connected_gene': 'GC08P104611', 'score': 0.29}, {'connected_gene': 'ZFPM2', 'score': 0.23}, {'connected_gene': 'ENSG00000283157', 'score': 0.21}]
chr8	GH08I104352	104352595	104352630	0.31	[{'connected_gene': 'DPYS', 'score': 9.39}, {'connected_gene': 'DCSTAMP', 'score': 0.39}, {'connected_gene': 'GC08M104420', 'score': 0.2}]
chr8	GH08I104402	104400093	104400242	0.2	[{'connected_gene': 'GC08M104420', 'score': 0.34}, {'connected_gene': 'DCSTAMP', 'score': 0.21}, {'connected_gene': 'DPYS', 'score': 0.2}]
chr8	GH08I104401	104400553	104400702	0.52	[{'connected_gene': 'GC08M104420', 'score': 0.34}, {'connected_gene': 'DCSTAMP', 'score': 0.21}, {'connected_gene': 'DPYS', 'score': 0.2}]
chr8	GH08I104400	104400293	104400442	0.46	[{'connected_gene': 'GC08M104420', 'score': 0.34}, {'connected_gene': 'DCSTAMP', 'score': 0.21}, {'connected_gene': 'DPYS', 'score': 0.2}]
chr8	GH08I104284	104284813	104285002	0.2	[{'connected_gene': 'PIR34879', 'score': 0.31}, {'connected_gene': 'DCSTAMP', 'score': 0.23}]
chr8	GH08I104411	104411680	104412635	0.72	[{'connected_gene': 'GC08M104420', 'score': 0.44}, {'connected_gene': 'DPYS', 'score': 0.23}, {'connected_gene': 'DCSTAMP', 'score': 0.19}]