PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000247843	[[69753482, 69753803], [69756567, 69756687], [69759412, 69759479], [69759569, 69759664], [69764485, 69764578], [69764667, 69764755], [69783926, 69784576]]	[[69753752, 69753803], [69756567, 69756687], [69759412, 69759479], [69759569, 69759664], [69764485, 69764578], [69764667, 69764755], [69783926, 69784096]]
ENST00000548020	[[69753489, 69753803], [69756567, 69756687], [69764485, 69764578], [69764667, 69764755], [69783926, 69784411]]	[[69753752, 69753803], [69756567, 69756687], [69764485, 69764578], [69764667, 69764755], [69783926, 69784096]]
ENST00000549685	[[69753499, 69753803], [69755096, 69755213], [69756567, 69756687], [69759412, 69759479], [69759569, 69759664], [69764485, 69764578], [69764667, 69764755]]	[[69759415, 69759479], [69759569, 69759664], [69764485, 69764578], [69764667, 69764755]]
ENST00000552949	[[69753535, 69753803], [69756567, 69756727]]	None
ENST00000552955	[[69753558, 69753803], [69756567, 69756687], [69757956, 69758079], [69759412, 69759479], [69759569, 69759664], [69764485, 69764578], [69764667, 69764751]]	[[69753752, 69753803], [69756567, 69756687], [69757956, 69758079], [69759412, 69759479], [69759569, 69759664], [69764485, 69764578], [69764667, 69764751]]
NM_001300950	[[69753489, 69753803], [69756567, 69756687], [69764485, 69764578], [69764667, 69764755], [69783926, 69784650]]	[[69753752, 69753803], [69756567, 69756687], [69764485, 69764578], [69764667, 69764755], [69783926, 69784096]]
NM_006530	[[69753489, 69753803], [69756567, 69756687], [69759412, 69759479], [69759569, 69759664], [69764485, 69764578], [69764667, 69764755], [69783926, 69784650]]	[[69753752, 69753803], [69756567, 69756687], [69759412, 69759479], [69759569, 69759664], [69764485, 69764578], [69764667, 69764755], [69783926, 69784096]]

Promoter

Chrom	Start	End	Description
chr12	69753448	69753577	CAGE_peak_1_at_YEATS4_5end
chr12	69753583	69753598	CAGE_peak_2_at_YEATS4_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr12	GH12I069358	69358888	69361115	2.09	[{'connected_gene': 'YEATS4', 'score': 592.52}, {'connected_gene': 'LYZ', 'score': 52.25}, {'connected_gene': 'NUP107', 'score': 39.1}, {'connected_gene': 'CNOT2', 'score': 21.32}, {'connected_gene': 'KRT8P39', 'score': 19.69}, {'connected_gene': 'RAP1B', 'score': 13.28}, {'connected_gene': 'RPL10P12', 'score': 12.26}, {'connected_gene': 'CPSF6', 'score': 11.13}, {'connected_gene': 'RN7SL804P', 'score': 0.26}]
chr12	GH12I069415	69415188	69416976	1.09	[{'connected_gene': 'YEATS4', 'score': 7.62}, {'connected_gene': 'RPS26P45', 'score': 0.44}, {'connected_gene': 'RN7SL804P', 'score': 0.37}]
chr12	GH12I069357	69357402	69358000	1.21	[{'connected_gene': 'YEATS4', 'score': 591.3}, {'connected_gene': 'ENSG00000257764', 'score': 0.77}]
chr12	GH12I068983	68983074	68983262	0.22	[{'connected_gene': 'MDM2', 'score': 37.01}, {'connected_gene': 'FRS2', 'score': 36.02}, {'connected_gene': 'CPSF6', 'score': 35.69}, {'connected_gene': 'YEATS4', 'score': 35.49}, {'connected_gene': 'NUP107', 'score': 17.28}, {'connected_gene': 'SLC35E3', 'score': 7.48}, {'connected_gene': 'CPM', 'score': 1.81}, {'connected_gene': 'GC12M069009', 'score': 0.31}]
chr12	GH12I069337	69337002	69339218	1.45	[{'connected_gene': 'LYZ', 'score': 61.36}, {'connected_gene': 'YEATS4', 'score': 12.93}, {'connected_gene': 'CPM', 'score': 3.29}, {'connected_gene': 'ENSG00000274979', 'score': 0.44}]
chr12	GH12I069350	69350801	69351800	0.72	[{'connected_gene': 'LYZ', 'score': 12.05}, {'connected_gene': 'YEATS4', 'score': 9.54}, {'connected_gene': 'ENSG00000257764', 'score': 0.77}]
chr12	GH12I069351	69350001	69350600	0.66	[{'connected_gene': 'LYZ', 'score': 550.77}, {'connected_gene': 'YEATS4', 'score': 16.5}, {'connected_gene': 'ENSG00000257764', 'score': 0.77}]
chr12	GH12I069340	69340401	69344200	1.34	[{'connected_gene': 'LYZ', 'score': 57.35}, {'connected_gene': 'YEATS4', 'score': 12.97}, {'connected_gene': 'ENSG00000274979', 'score': 0.39}]
chr12	GH12I069348	69348200	69349475	2.11	[{'connected_gene': 'LYZ', 'score': 571.56}, {'connected_gene': 'YEATS4', 'score': 16.46}, {'connected_gene': 'ENSG00000257764', 'score': 0.44}]
chr12	GH12I069390	69390001	69390110	0.31	[{'connected_gene': 'LYZ', 'score': 11.15}, {'connected_gene': 'FRS2', 'score': 10.39}, {'connected_gene': 'RN7SL804P', 'score': 0.39}, {'connected_gene': 'YEATS4', 'score': 0.29}]
chr12	GH12I069404	69404130	69406882	0.88	[{'connected_gene': 'LYZ', 'score': 15.05}, {'connected_gene': 'FRS2', 'score': 10.74}, {'connected_gene': 'CCT2', 'score': 10.04}, {'connected_gene': 'YEATS4', 'score': 6.15}, {'connected_gene': 'RN7SL804P', 'score': 0.77}, {'connected_gene': 'RPS26P45', 'score': 0.37}]
chr12	GH12I069533	69533538	69536599	1	[{'connected_gene': 'CPSF6', 'score': 18.19}, {'connected_gene': 'NUP107', 'score': 16.98}, {'connected_gene': 'CNOT2', 'score': 12.76}, {'connected_gene': 'KRT8P39', 'score': 12.01}, {'connected_gene': 'YEATS4', 'score': 10.14}, {'connected_gene': 'FRS2', 'score': 7.33}, {'connected_gene': 'MIR3913-2', 'score': 0.25}, {'connected_gene': 'GC12P069484', 'score': 0.23}, {'connected_gene': 'GC12P069483', 'score': 0.23}]
chr12	GH12I069023	69023790	69025746	1.16	[{'connected_gene': 'CPSF6', 'score': 21.54}, {'connected_gene': 'MDM2', 'score': 20.87}, {'connected_gene': 'YEATS4', 'score': 20.28}, {'connected_gene': 'FRS2', 'score': 20.03}, {'connected_gene': 'NUP107', 'score': 12.2}, {'connected_gene': 'SLC35E3', 'score': 6.8}, {'connected_gene': 'GC12M069009', 'score': 0.37}, {'connected_gene': 'GC12M069139', 'score': 0.13}]
chr12	GH12I069238	69238484	69241576	2.3	[{'connected_gene': 'CPSF6', 'score': 559.71}, {'connected_gene': 'LYZ', 'score': 23.47}, {'connected_gene': 'RAP1B', 'score': 13.28}, {'connected_gene': 'NUP107', 'score': 10.24}, {'connected_gene': 'MDM2', 'score': 8.14}, {'connected_gene': 'YEATS4', 'score': 8.13}, {'connected_gene': 'FRS2', 'score': 7.94}, {'connected_gene': 'CCT2', 'score': 6.82}, {'connected_gene': 'SLC35E3', 'score': 3.65}, {'connected_gene': 'RAB3IP', 'score': 3.6}, {'connected_gene': 'GC12P069269', 'score': 0.31}]
chr12	GH12I069427	69427645	69430192	0.38	[{'connected_gene': 'FRS2', 'score': 11.15}, {'connected_gene': 'LYZ', 'score': 10.41}, {'connected_gene': 'YEATS4', 'score': 5.79}, {'connected_gene': 'GC12P069426', 'score': 0.77}, {'connected_gene': 'LINC02373', 'score': 0.77}]
chr12	GH12I069526	69526959	69529328	0.79	[{'connected_gene': 'FRS2', 'score': 18.68}, {'connected_gene': 'LYZ', 'score': 10.79}, {'connected_gene': 'CCT2', 'score': 5.2}, {'connected_gene': 'YEATS4', 'score': 4.8}, {'connected_gene': 'GC12P069484', 'score': 0.26}, {'connected_gene': 'GC12P069483', 'score': 0.26}, {'connected_gene': 'MIR3913-2', 'score': 0.22}]
chr12	GH12I069445	69445834	69446044	0.22	[{'connected_gene': 'FRS2', 'score': 3.61}, {'connected_gene': 'CPSF6', 'score': 3.17}, {'connected_gene': 'CCT2', 'score': 3.14}, {'connected_gene': 'YEATS4', 'score': 3.12}, {'connected_gene': 'LINC02373', 'score': 0.39}]
chr12	GH12I069474	69474420	69476417	1.17	[{'connected_gene': 'CCT2', 'score': 16.73}, {'connected_gene': 'FRS2', 'score': 12.88}, {'connected_gene': 'LYZ', 'score': 9.86}, {'connected_gene': 'CPSF6', 'score': 6.87}, {'connected_gene': 'YEATS4', 'score': 6.67}, {'connected_gene': 'RAB3IP', 'score': 1.55}, {'connected_gene': 'GC12P069484', 'score': 0.44}, {'connected_gene': 'GC12P069483', 'score': 0.44}]
chr12	GH12I069619	69619509	69619530	0.23	[{'connected_gene': 'CCT2', 'score': 20.04}, {'connected_gene': 'FRS2', 'score': 19.78}, {'connected_gene': 'CPSF6', 'score': 19.26}, {'connected_gene': 'YEATS4', 'score': 18.54}, {'connected_gene': 'LYZ', 'score': 10.65}, {'connected_gene': 'RAB3IP', 'score': 2.06}, {'connected_gene': 'LOC105369823', 'score': 0.77}, {'connected_gene': 'LRRC10', 'score': 0.44}]
chr12	GH12I069417	69417389	69417402	0.2	[{'connected_gene': 'RPS26P45', 'score': 0.44}, {'connected_gene': 'RN7SL804P', 'score': 0.37}, {'connected_gene': 'YEATS4', 'score': 0.22}]
chr12	GH12I068951	68951294	68952654	1.15	[{'connected_gene': 'RNU7-4P', 'score': 11.35}, {'connected_gene': 'CPSF6', 'score': 7.51}, {'connected_gene': 'CPM', 'score': 4.36}, {'connected_gene': 'MDM2', 'score': 3.92}, {'connected_gene': 'YEATS4', 'score': 3.78}, {'connected_gene': 'NUP107', 'score': 2.55}, {'connected_gene': 'SLC35E3', 'score': 1.59}, {'connected_gene': 'PRELID2P1', 'score': 0.44}, {'connected_gene': 'ENSG00000257289', 'score': 0.28}]
chr12	GH12I069328	69328449	69334568	2.01	[{'connected_gene': 'ENSG00000274979', 'score': 550.77}, {'connected_gene': 'LYZ', 'score': 40.75}, {'connected_gene': 'NUP107', 'score': 19.98}, {'connected_gene': 'YEATS4', 'score': 19.57}, {'connected_gene': 'CNOT2', 'score': 16.33}, {'connected_gene': 'CPSF6', 'score': 14.5}, {'connected_gene': 'KRT8P39', 'score': 11.09}, {'connected_gene': 'CPM', 'score': 1.89}, {'connected_gene': 'GC12M069304', 'score': 0.34}]
chr12	GH12I069006	69006235	69009579	1.32	[{'connected_gene': 'GC12M069009', 'score': 550.77}, {'connected_gene': 'CPM', 'score': 37.58}, {'connected_gene': 'RAP1B', 'score': 11.78}, {'connected_gene': 'LYZ', 'score': 8.74}, {'connected_gene': 'CPSF6', 'score': 4.08}, {'connected_gene': 'MDM2', 'score': 4.07}, {'connected_gene': 'FRS2', 'score': 3.93}, {'connected_gene': 'YEATS4', 'score': 3.65}, {'connected_gene': 'SLC35E3', 'score': 3.13}, {'connected_gene': 'NUP107', 'score': 2.54}]
chr12	GH12I069354	69354701	69354850	1.05	[{'connected_gene': 'ENSG00000257764', 'score': 550.77}, {'connected_gene': 'FRS2', 'score': 9.95}, {'connected_gene': 'YEATS4', 'score': 9.88}]