PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000608795	[[140454384, 140454520], [140468073, 140468203], [140525554, 140525636], [140525922, 140525964], [140527751, 140527853]]	[[140454384, 140454520], [140468073, 140468203], [140525554, 140525570]]
ENST00000506866	[[140417094, 140417675], [140439038, 140439196], [140441430, 140441548], [140444507, 140444589], [140450184, 140450374], [140454318, 140454520], [140468073, 140468203], [140477251, 140477392]]	[[140417506, 140417675], [140439038, 140439196], [140441430, 140441548], [140444507, 140444589], [140450184, 140450374], [140454318, 140454520], [140468073, 140468203], [140477251, 140477291]]
ENST00000515101	[[140417242, 140417675], [140439038, 140439196], [140441430, 140441550]]	None
ENST00000274031	[[140427189, 140432997], [140439038, 140439196], [140441430, 140441548], [140444507, 140444589], [140450184, 140450374], [140454318, 140454520], [140468073, 140468203], [140477251, 140477928]]	[[140432816, 140432997], [140439038, 140439196], [140441430, 140441548], [140444507, 140444589], [140450184, 140450374], [140454318, 140454520], [140468073, 140468203], [140477251, 140477291]]
ENST00000404104	[[140453732, 140454520], [140468073, 140468203], [140477251, 140477923]]	[[140454282, 140454520], [140468073, 140468203], [140477251, 140477291]]
ENST00000406354	[[140453735, 140454520], [140468073, 140468203], [140469172, 140469273], [140477251, 140477362]]	[[140454428, 140454520], [140468073, 140468191]]
ENST00000608958	[[140517761, 140522644], [140523836, 140523911], [140525554, 140525636], [140525922, 140525964], [140527513, 140527610], [140527751, 140527853]]	[[140522594, 140522644], [140523836, 140523911], [140525554, 140525570]]
NM_001306199	[[140417087, 140417675], [140439038, 140439196], [140441430, 140441548], [140444507, 140444589], [140450184, 140450374], [140454318, 140454520], [140468073, 140468203], [140477251, 140477923]]	[[140417506, 140417675], [140439038, 140439196], [140441430, 140441548], [140444507, 140444589], [140450184, 140450374], [140454318, 140454520], [140468073, 140468203], [140477251, 140477291]]
NM_030648	[[140427191, 140432997], [140439038, 140439196], [140441430, 140441548], [140444507, 140444589], [140450184, 140450374], [140454318, 140454520], [140468073, 140468203], [140477251, 140477923]]	[[140432816, 140432997], [140439038, 140439196], [140441430, 140441548], [140444507, 140444589], [140450184, 140450374], [140454318, 140454520], [140468073, 140468203], [140477251, 140477291]]
NR_131339	[[140453732, 140454520], [140468073, 140468203], [140469172, 140469273], [140477251, 140477923]]	None
NM_001306200	[[140453732, 140454520], [140468073, 140468203], [140477251, 140477923]]	[[140454282, 140454520], [140468073, 140468203], [140477251, 140477291]]

Promoter

Chrom	Start	End	Description
chr4	140477339	140477350	CAGE_peak_3_at_SETD7_5end
chr4	140477353	140477400	CAGE_peak_1_at_SETD7_5end
chr4	140477535	140477623	CAGE_peak_2_at_SETD7_5end
chr4	140477629	140477640	CAGE_peak_6_at_SETD7_5end
chr4	140477910	140477922	CAGE_peak_10_at_SETD7_5end
chr4	140477928	140477990	CAGE_peak_4_at_SETD7_5end
chr4	140478036	140478062	CAGE_peak_8_at_SETD7_5end
chr4	140478299	140478335	CAGE_peak_5_at_SETD7_5end
chr4	140478355	140478368	CAGE_peak_13_at_SETD7_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr4	GH04I139574	139574504	139577892	0.66	[{'connected_gene': 'SETD7', 'score': 11.91}, {'connected_gene': 'MGARP', 'score': 9.77}, {'connected_gene': 'LOC105377451', 'score': 0.44}]
chr4	GH04I139528	139528232	139529416	0.97	[{'connected_gene': 'SETD7', 'score': 18.09}, {'connected_gene': 'MGARP', 'score': 10.09}, {'connected_gene': 'FTH1P24', 'score': 0.37}, {'connected_gene': 'PIR37632', 'score': 0.34}, {'connected_gene': 'GC04M139508', 'score': 0.34}]
chr4	GH04I139603	139603727	139603876	0.93	[{'connected_gene': 'SETD7', 'score': 0.77}, {'connected_gene': 'LOC105377622', 'score': 0.77}, {'connected_gene': 'LOC105377451', 'score': 0.28}]
chr4	GH04I139606	139606401	139607927	0.82	[{'connected_gene': 'SETD7', 'score': 550.77}, {'connected_gene': 'LOC105377622', 'score': 550.77}]
chr4	GH04I139592	139592627	139594039	1.12	[{'connected_gene': 'SETD7', 'score': 0.39}, {'connected_gene': 'LOC105377451', 'score': 0.34}]
chr4	GH04I139600	139600107	139600256	0.93	[{'connected_gene': 'SETD7', 'score': 0.44}, {'connected_gene': 'LOC105377451', 'score': 0.29}]
chr4	GH04I139588	139588317	139590326	0.38	[{'connected_gene': 'SETD7', 'score': 0.37}, {'connected_gene': 'LOC105377451', 'score': 0.34}]
chr4	GH04I139595	139595567	139597791	0.99	[{'connected_gene': 'SETD7', 'score': 0.39}, {'connected_gene': 'LOC105377451', 'score': 0.31}]
chr4	GH04I139539	139539578	139541899	0.38	[{'connected_gene': 'SETD7', 'score': 9.11}, {'connected_gene': 'FTH1P24', 'score': 0.44}, {'connected_gene': 'PIR37632', 'score': 0.29}, {'connected_gene': 'GC04M139508', 'score': 0.29}]
chr4	GH04I139532	139532567	139533754	0.72	[{'connected_gene': 'SETD7', 'score': 12.62}, {'connected_gene': 'FTH1P24', 'score': 0.39}, {'connected_gene': 'PIR37632', 'score': 0.31}, {'connected_gene': 'GC04M139508', 'score': 0.31}]
chr4	GH04I140070	140070201	140072586	0.99	[{'connected_gene': 'MAML3', 'score': 12.19}, {'connected_gene': 'LOC101927516', 'score': 11.77}, {'connected_gene': 'SETD7', 'score': 5.61}, {'connected_gene': 'GC04M140002', 'score': 0.2}]
chr4	GH04I139567	139567804	139569416	0.63	[{'connected_gene': 'LOC105377451', 'score': 550.77}, {'connected_gene': 'SETD7', 'score': 0.28}]
chr4	GH04I139562	139562020	139565206	0.49	[{'connected_gene': 'LOC105377451', 'score': 0.77}, {'connected_gene': 'ENSG00000272717', 'score': 0.44}, {'connected_gene': 'SETD7', 'score': 0.26}]
chr4	GH04I140060	140060723	140062483	1	[{'connected_gene': 'LOC101927516', 'score': 11.23}, {'connected_gene': 'SETD7', 'score': 5.3}, {'connected_gene': 'GC04M140002', 'score': 0.22}, {'connected_gene': 'MAML3', 'score': 0.16}]
chr4	GH04I140081	140081495	140086428	1.15	[{'connected_gene': 'LOC101927516', 'score': 11.7}, {'connected_gene': 'MAML3', 'score': 11.16}, {'connected_gene': 'SETD7', 'score': 6.83}, {'connected_gene': 'GC04M140002', 'score': 0.18}]
chr4	GH04I139550	139550846	139561998	2.64	[{'connected_gene': 'ENSG00000272717', 'score': 550.77}, {'connected_gene': 'SETD7', 'score': 550.23}, {'connected_gene': 'ELF2', 'score': 14.78}, {'connected_gene': 'NAA15', 'score': 13.64}, {'connected_gene': 'MAML3', 'score': 12.83}, {'connected_gene': 'ELMOD2', 'score': 10.29}, {'connected_gene': 'NDUFC1', 'score': 4.55}, {'connected_gene': 'FTH1P24', 'score': 0.39}]