PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000265968	[[19203577, 19204293], [19206498, 19206592], [19207762, 19207895], [19209682, 19209851], [19213883, 19214023], [19223500, 19223589]]	[[19204216, 19204293], [19206498, 19206592], [19207762, 19207895], [19209682, 19209851], [19213883, 19213995]]
ENST00000533783	[[19203586, 19204293], [19206498, 19206592], [19207762, 19207895], [19209682, 19209851], [19213883, 19214023], [19223500, 19223589], [19231996, 19232120]]	[[19204216, 19204293], [19206498, 19206592], [19207762, 19207895], [19209682, 19209851], [19213883, 19213995]]
NM_003476	[[19203576, 19204293], [19206498, 19206592], [19207762, 19207895], [19209682, 19209851], [19213883, 19214023], [19223500, 19223589], [19231996, 19232118]]	[[19204216, 19204293], [19206498, 19206592], [19207762, 19207895], [19209682, 19209851], [19213883, 19213995]]

Promoter

Chrom	Start	End	Description
chr11	19223523	19223541	CAGE_peak_1_at_CSRP3_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr11	GH11I019198	19197946	19202859	1.44	[{'connected_gene': 'CSRP3', 'score': 550.39}, {'connected_gene': 'E2F8', 'score': 6.93}, {'connected_gene': 'ENSG00000255308', 'score': 0.77}]
chr11	GH11I019234	19234014	19234040	0.4	[{'connected_gene': 'E2F8', 'score': 0.44}, {'connected_gene': 'CSRP3', 'score': 0.34}, {'connected_gene': 'ENSG00000255308', 'score': 0.28}]
chr11	GH11I019235	19234269	19235288	0.31	[{'connected_gene': 'E2F8', 'score': 0.44}, {'connected_gene': 'CSRP3', 'score': 0.34}, {'connected_gene': 'ENSG00000255308', 'score': 0.28}]
chr11	GH11I019232	19232010	19233663	1	[{'connected_gene': 'E2F8', 'score': 0.44}, {'connected_gene': 'CSRP3', 'score': 0.34}, {'connected_gene': 'ENSG00000255308', 'score': 0.28}]
chr11	GH11I019206	19206385	19210096	0.71	[{'connected_gene': 'E2F8', 'score': 6.96}, {'connected_gene': 'CSRP3', 'score': 0.77}, {'connected_gene': 'ENSG00000255308', 'score': 0.39}]
chr11	GH11I019216	19216805	19220451	0.96	[{'connected_gene': 'E2F8', 'score': 19.21}, {'connected_gene': 'ENSG00000255308', 'score': 12.72}, {'connected_gene': 'ZDHHC13', 'score': 10.15}, {'connected_gene': 'CSRP3', 'score': 0.44}]
chr11	GH11I019236	19236180	19245260	2.42	[{'connected_gene': 'E2F8', 'score': 550.77}, {'connected_gene': 'SPTY2D1', 'score': 26.54}, {'connected_gene': 'ENSG00000256361', 'score': 12.67}, {'connected_gene': 'ENSG00000256588', 'score': 12.66}, {'connected_gene': 'TSG101', 'score': 11.34}, {'connected_gene': 'ZDHHC13', 'score': 10.67}, {'connected_gene': 'LOC105376580', 'score': 6.78}, {'connected_gene': 'CSRP3', 'score': 0.29}, {'connected_gene': 'ENSG00000255308', 'score': 0.26}]
chr11	GH11I019172	19172537	19174989	1.16	[{'connected_gene': 'ZDHHC13', 'score': 14.99}, {'connected_gene': 'ENSG00000255308', 'score': 12.31}, {'connected_gene': 'CSRP3', 'score': 11.93}, {'connected_gene': 'GC11P019191', 'score': 0.37}]
chr11	GH11I019183	19183947	19186544	0.43	[{'connected_gene': 'GTF2H1', 'score': 4.15}, {'connected_gene': 'GC11P019191', 'score': 0.44}, {'connected_gene': 'CSRP3', 'score': 0.31}, {'connected_gene': 'ZDHHC13', 'score': 0.2}]
chr11	GH11I019228	19228390	19230925	0.51	[{'connected_gene': 'LOC105376580', 'score': 4.73}, {'connected_gene': 'E2F8', 'score': 0.39}, {'connected_gene': 'CSRP3', 'score': 0.37}, {'connected_gene': 'ENSG00000255308', 'score': 0.29}]
chr11	GH11I019192	19192792	19195374	0.38	[{'connected_gene': 'LOC105376579', 'score': 6.61}, {'connected_gene': 'ENSG00000255308', 'score': 0.77}, {'connected_gene': 'GC11P019191', 'score': 0.77}, {'connected_gene': 'CSRP3', 'score': 0.37}]
chr11	GH11I019187	19187954	19188083	0.66	[{'connected_gene': 'GC11P019191', 'score': 0.77}, {'connected_gene': 'CSRP3', 'score': 0.34}, {'connected_gene': 'ZDHHC13', 'score': 0.19}]
chr11	GH11I019197	19197561	19197912	0.38	[{'connected_gene': 'ENSG00000255308', 'score': 550.77}, {'connected_gene': 'CSRP3', 'score': 0.39}]
chr11	GH11I019220	19220814	19222368	0.71	[{'connected_gene': 'ENSG00000255308', 'score': 11.42}, {'connected_gene': 'ZDHHC13', 'score': 9.96}, {'connected_gene': 'CSRP3', 'score': 0.39}, {'connected_gene': 'E2F8', 'score': 0.34}]
chr11	GH11I019224	19224564	19226331	0.38	[{'connected_gene': 'ENSG00000255308', 'score': 11.39}, {'connected_gene': 'ZDHHC13', 'score': 10.23}, {'connected_gene': 'E2F8', 'score': 6.3}, {'connected_gene': 'CSRP3', 'score': 0.39}]
chr11	GH11I019191	19191309	19192375	0.79	[{'connected_gene': 'GC11P019191', 'score': 550.77}, {'connected_gene': 'LOC105376579', 'score': 6.55}, {'connected_gene': 'CSRP3', 'score': 0.37}, {'connected_gene': 'ZDHHC13', 'score': 0.19}]
chr11	GH11I019196	19196054	19197122	0.63	[{'connected_gene': 'ENSG00000255308', 'score': 550.77}, {'connected_gene': 'LOC105376579', 'score': 6.84}, {'connected_gene': 'GC11P019191', 'score': 0.77}, {'connected_gene': 'CSRP3', 'score': 0.39}]