PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000229708	[[150285142, 150285270], [150289742, 150290006], [150290220, 150290496], [150291151, 150291283], [150292504, 150294846]]	[[150285185, 150285270], [150289742, 150290006], [150290220, 150290496], [150291151, 150291261]]
NM_001317089	[[150285109, 150285270], [150291151, 150291283], [150292504, 150294849]]	[[150285185, 150285270], [150291151, 150291261]]
NM_025218	[[150285109, 150285270], [150289742, 150290006], [150290220, 150290496], [150291151, 150291283], [150292504, 150294849]]	[[150285185, 150285270], [150289742, 150290006], [150290220, 150290496], [150291151, 150291261]]
NR_133659	[[150285109, 150286618], [150289742, 150290006], [150290220, 150290496], [150291151, 150291283], [150292504, 150294849]]	None

Promoter

Chrom	Start	End	Description
chr6	150285070	150285086	CAGE_peak_2_at_ULBP1_5end
chr6	150285102	150285120	CAGE_peak_3_at_ULBP1_5end
chr6	150285135	150285151	CAGE_peak_1_at_ULBP1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr6	GH06I149858	149858925	149865280	2.45	[{'connected_gene': 'LRP11', 'score': 556.23}, {'connected_gene': 'ENSG00000268592', 'score': 550.77}, {'connected_gene': 'RAET1E-AS1', 'score': 550.77}, {'connected_gene': 'ENSG00000216906', 'score': 32.14}, {'connected_gene': 'ENSG00000231760', 'score': 32.12}, {'connected_gene': 'RAET1E', 'score': 15.94}, {'connected_gene': 'LATS1', 'score': 11.75}, {'connected_gene': 'NUP43', 'score': 7.57}, {'connected_gene': 'ULBP1', 'score': 5.09}, {'connected_gene': 'ENSG00000273132', 'score': 0.44}]
chr6	GH06I149962	149962670	149965727	2.35	[{'connected_gene': 'ULBP1', 'score': 578.81}, {'connected_gene': 'LATS1', 'score': 54.56}, {'connected_gene': 'NUP43', 'score': 38.37}, {'connected_gene': 'PPIL4', 'score': 21.15}, {'connected_gene': 'KATNA1', 'score': 18.59}, {'connected_gene': 'RAET1K', 'score': 16.65}, {'connected_gene': 'ENSG00000216906', 'score': 11.43}, {'connected_gene': 'ENSG00000233330', 'score': 10.53}, {'connected_gene': 'ULBP2', 'score': 8.78}, {'connected_gene': 'ENSG00000219298', 'score': 0.39}]
chr6	GH06I150007	150007205	150007374	0.75	[{'connected_gene': 'ULBP1', 'score': 13.28}, {'connected_gene': 'RAET1L', 'score': 5.01}, {'connected_gene': 'RAET1K', 'score': 0.77}]
chr6	GH06I149937	149937839	149939245	0.98	[{'connected_gene': 'ULBP2', 'score': 11.0}, {'connected_gene': 'ULBP1', 'score': 9.42}, {'connected_gene': 'RAET1K', 'score': 9.23}, {'connected_gene': 'LOC105378052', 'score': 0.77}]
chr6	GH06I150004	150004291	150006012	1.52	[{'connected_gene': 'RAET1K', 'score': 550.77}, {'connected_gene': 'LATS1', 'score': 37.58}, {'connected_gene': 'PPIL4', 'score': 28.15}, {'connected_gene': 'ENSG00000233330', 'score': 21.52}, {'connected_gene': 'RPS18P9', 'score': 20.52}, {'connected_gene': 'ULBP1', 'score': 18.25}, {'connected_gene': 'NUP43', 'score': 14.56}, {'connected_gene': 'KATNA1', 'score': 11.56}, {'connected_gene': 'GINM1', 'score': 10.67}, {'connected_gene': 'ENSG00000231760', 'score': 9.73}, {'connected_gene': 'MTHFD1L', 'score': 4.82}, {'connected_gene': 'BTF3P10', 'score': 0.31}]
chr6	GH06I149990	149990465	149991174	0.8	[{'connected_gene': 'RAET1E', 'score': 10.95}, {'connected_gene': 'ULBP1', 'score': 6.84}, {'connected_gene': 'RAET1K', 'score': 0.39}, {'connected_gene': 'BTF3P10', 'score': 0.39}]
chr6	GH06I149991	149991185	149991334	0.69	[{'connected_gene': 'RAET1E', 'score': 10.95}, {'connected_gene': 'ULBP1', 'score': 6.72}, {'connected_gene': 'RAET1K', 'score': 0.39}, {'connected_gene': 'BTF3P10', 'score': 0.39}]
chr6	GH06I150001	150001005	150001875	0.7	[{'connected_gene': 'ENSG00000231760', 'score': 6.16}, {'connected_gene': 'ULBP1', 'score': 5.18}, {'connected_gene': 'RAET1K', 'score': 0.77}, {'connected_gene': 'BTF3P10', 'score': 0.34}]