PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000295148	[[24252209, 24254032], [24255698, 24255816], [24260546, 24262382], [24270183, 24270223]]	[[24253802, 24254032], [24255698, 24255816], [24260546, 24262364]]
ENST00000406895	[[24252216, 24254032], [24260546, 24262382], [24270183, 24270231]]	[[24253981, 24254032], [24260546, 24262364]]
ENST00000443232	[[24261842, 24262382], [24272423, 24272445]]	[[24261842, 24262364]]
NM_025203	[[24252205, 24254032], [24255698, 24255816], [24260546, 24262382], [24270183, 24270296]]	[[24253802, 24254032], [24255698, 24255816], [24260546, 24262364]]
NM_001142319	[[24252205, 24254032], [24260546, 24262382], [24270183, 24270296]]	[[24253981, 24254032], [24260546, 24262364]]

Promoter

Chrom	Start	End	Description
chr2	24270217	24270232	CAGE_peak_2_at_C2orf44_5end
chr2	24270245	24270277	CAGE_peak_1_at_C2orf44_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr2	GH02I024082	24082186	24085792	2.28	[{'connected_gene': 'TP53I3', 'score': 574.02}, {'connected_gene': 'FAM228B', 'score': 38.04}, {'connected_gene': 'ATAD2B', 'score': 16.13}, {'connected_gene': 'PFN4', 'score': 12.48}, {'connected_gene': 'WDCP', 'score': 10.58}, {'connected_gene': 'ENSG00000271936', 'score': 10.05}, {'connected_gene': 'FAM228A', 'score': 5.42}, {'connected_gene': 'GC02P023754', 'score': 0.05}]
chr2	GH02I024045	24045670	24048196	2.04	[{'connected_gene': 'WDCP', 'score': 580.15}, {'connected_gene': 'RNU6-370P', 'score': 550.77}, {'connected_gene': 'FAM228B', 'score': 34.71}, {'connected_gene': 'ATAD2B', 'score': 25.92}, {'connected_gene': 'PFN4', 'score': 12.79}, {'connected_gene': 'ENSG00000271936', 'score': 10.06}, {'connected_gene': 'FAM228A', 'score': 5.52}, {'connected_gene': 'MFSD2B', 'score': 0.28}, {'connected_gene': 'GC02P023754', 'score': 0.06}]
chr2	GH02I024970	24970449	24974021	2.3	[{'connected_gene': 'DNAJC27', 'score': 557.15}, {'connected_gene': 'DNAJC27-AS1', 'score': 550.77}, {'connected_gene': 'ADCY3', 'score': 37.72}, {'connected_gene': 'ASXL2', 'score': 14.78}, {'connected_gene': 'WDCP', 'score': 11.46}, {'connected_gene': 'EFR3B', 'score': 11.4}, {'connected_gene': 'LINC01381', 'score': 11.08}, {'connected_gene': 'POMC', 'score': 10.81}, {'connected_gene': 'PTRHD1', 'score': 6.48}, {'connected_gene': 'ENSG00000207069', 'score': 0.28}, {'connected_gene': 'GC02M025008', 'score': 0.28}]
chr2	GH02I024791	24791001	24795826	2.5	[{'connected_gene': 'PTRHD1', 'score': 557.21}, {'connected_gene': 'CENPO', 'score': 556.08}, {'connected_gene': 'LOC105369164', 'score': 550.77}, {'connected_gene': 'ATAD2B', 'score': 23.64}, {'connected_gene': 'DNMT3A', 'score': 14.01}, {'connected_gene': 'ITSN2', 'score': 13.63}, {'connected_gene': 'WDCP', 'score': 11.15}, {'connected_gene': 'FAM228B', 'score': 10.41}, {'connected_gene': 'ADCY3', 'score': 9.13}, {'connected_gene': 'NCOA1', 'score': 7.68}, {'connected_gene': 'PIR51987', 'score': 0.31}]
chr2	GH02I024075	24075204	24078746	2.32	[{'connected_gene': 'FAM228B', 'score': 587.3}, {'connected_gene': 'GC02M024079', 'score': 550.77}, {'connected_gene': 'PIR43014', 'score': 550.77}, {'connected_gene': 'SF3B6', 'score': 550.77}, {'connected_gene': 'TP53I3', 'score': 34.48}, {'connected_gene': 'ATAD2B', 'score': 16.14}, {'connected_gene': 'PFN4', 'score': 13.19}, {'connected_gene': 'WDCP', 'score': 10.6}, {'connected_gene': 'ENSG00000271936', 'score': 10.05}, {'connected_gene': 'GC02P023754', 'score': 0.05}]
chr2	GH02I024048	24048981	24050800	1.89	[{'connected_gene': 'FKBP1B', 'score': 550.77}, {'connected_gene': 'WDCP', 'score': 550.77}, {'connected_gene': 'FAM228B', 'score': 46.56}, {'connected_gene': 'SF3B6', 'score': 12.16}, {'connected_gene': 'MFSD2B', 'score': 11.81}, {'connected_gene': 'TP53I3', 'score': 11.13}, {'connected_gene': 'UBXN2A', 'score': 10.72}, {'connected_gene': 'ATAD2B', 'score': 10.72}, {'connected_gene': 'PFN4', 'score': 10.09}, {'connected_gene': 'GC02M024079', 'score': 0.31}, {'connected_gene': 'PIR43014', 'score': 0.31}, {'connected_gene': 'GC02P023754', 'score': 0.06}]